M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_49200

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_49200 113 2.36 Mlig455_046208

Neo: Int S/G2/M

Age: -

 ZSWIM7 Mlig455_046208 {REF} {Length: 1601} {TRANSSPLICED} {Human: ENSG00000214941, ZSWIM7, zinc finger SWIM-type containing 7, [RH, Score=80.1, Expect=2e-19]} {Mouse: ENSMUSG00000014243, Zswim7, zinc finger SWIM-type containing 7, [RH, Score=75.9, Expect=6e-18]} {RNA1509_45687} {RNA1310_11948.1} {RNA815_29151}

Cumulative graph for MligTC455_49200

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -5.217 2.15 1.00000 1.00000
RegionR2 1.757 2.15 0.16973 0.51511
RegionR3 1.724 2.15 0.11698 0.59332
RegionR4 1.802 2.15 0.11563 0.33866
RegionR5 0.948 2.15 0.38322 0.73798
RegionR6 2.148 2.15 0.04577 0.39955
RegionR7 1.799 2.15 0.14947 0.71874
RegionR8 -4.961 2.15 0.99971 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 0.267 2.15 0.99998 1.00000
RegenerationR2 0.08 2.15 0.90574 1.00000
RegenerationR3 0.165 2.15 0.82199 0.98806
RegenerationR4 -1.134 2.15 0.16980 0.60650
RegenerationR5 0.486 2.15 0.49863 0.85784
RegenerationR6 -0.199 2.15 0.79452 0.97449
RegenerationBL -3.642 2.15 0.99992 1.00000
RegenerationTP 2.014 2.15 0.34782 0.78962


Genes with expression patterns similar to MligTC455_49200

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_49200 113 2.36 Mlig455_046208

Neo: Int S/G2/M

Age: -

 ZSWIM7 6 1.000 1.000 1.000 1.000 1.000 1.000 Mlig455_046208 {REF} {Length: 1601} {TRANSSPLICED} {Human: ENSG00000214941, ZSWIM7, zinc finger SWIM-type containing 7, [RH, Score=80.1, Expect=2e-19]} {Mouse: ENSMUSG00000014243, Zswim7, zinc finger SWIM-type containing 7, [RH, Score=75.9, Expect=6e-18]} {RNA1509_45687} {RNA1310_11948.1} {RNA815_29151}
2. MligTC455_55900 31 0.65 Mlig455_045781

Neo: -

Age: -

 0.981 - - - - 0.981 - Mlig455_045781 {REF} {Length: 1127} {NoTransDecoderORF} {RNA1310_134600}
3. MligTC455_52348 196 4.08 Mlig455_050601

Neo: -

Age: logFC(26M/2M)=-0.400

 0.971 - - - - 0.971 - Mlig455_050601 {REF} {Length: 3282} {Pfam: Spt20 family [PF12090.10, score=19.8]} {RNA1509_7271} {RNA1310_26412} {RNA815_23572}
4. MligTC455_53623 66 1.37 Mlig455_062576

Neo: -

Age: -

 0.968 - - - - 0.968 - Mlig455_062576 {REF} {Length: 3190} {Pfam: 7 transmembrane receptor (rhodopsin family) [PF00001.23, score=87.2]; Serpentine type 7TM GPCR chemoreceptor Srw [PF10324.11, score=77.7]} {Dmel: FBgn0029723, Proc-R, Proctolin receptor, [RH, Score=76.6, Expect=1e-14]} {Celegans: WBGene00010986, sprr-1, Sex Peptide Receptor (Drosophila) Related, [Score=93.2, Expect=3e-20]} {Smed: dd_Smed_v6_16149_0_1, dd_Smed_v6_16149_0_1, [Score=141, Expect=4e-38]} {RNA1509_25415} {RNA1310_42304} {RNA815_54656}
5. MligTC455_47237 463 9.64 Mlig455_050031

Neo: Irradiation

Age: logFC(26M/2M)=0.394

 UBASH3B 0.965 - - - - - 0.965 Mlig455_050031 {REF} {Length: 2718} {Pfam: Histidine phosphatase superfamily (branch 1) [PF00300.24, score=51.3]} {Human: ENSG00000154127, UBASH3B, ubiquitin associated and SH3 domain containing B, [RH, Score=153, Expect=2e-38]} {Mouse: ENSMUSG00000032020, Ubash3b, ubiquitin associated and SH3 domain containing, B, [RH, Score=169, Expect=5e-44]} {Dmel: FBgn0039137, CG13604, [RH, Score=120, Expect=5e-28]} {Celegans: WBGene00020321, T07F12.1, [RH, Score=116, Expect=1e-28]} {Smed: dd_Smed_v6_12024_0_1, dd_Smed_v6_12024_0_1, [RH, Score=162, Expect=4e-42]} {RNA1509_46344} {RNA1310_4333.1, RNA1509_46344} {RNA1509_46344, RNA815_13389}
6. MligTC455_51755 191 3.98 Mlig455_003565

Neo: -

Age: Up-Up-Down

 0.964 - - - - - 0.964 Mlig455_003565 {REF} {Length: 2379} {Pfam: 7 transmembrane receptor (rhodopsin family) [PF00001.23, score=54.2]; Serpentine type 7TM GPCR chemoreceptor Srsx [PF10320.11, score=21.0]; Serpentine type 7TM GPCR chemoreceptor Srx [PF10328.11, score=19.7]} {RNA1509_16270} {RNA1310_6515} {RNA815_8558}
7. MligTC455_06836 20 0.41 Mlig455_053687, Mlig455_064880

Neo: -

Age: logFC(26M/2M)=-0.375

 0.96 - - - - 0.960 -

Mlig455_053687 {REF} {Length: 504} {RNA1509_10507} {RNA1310_3824.1} {RNA815_2706}

Mlig455_064880 {REF} {Length: 499} {RNA1509_10507} {RNA1310_3824.1} {RNA815_2706}
8. MligTC455_31074 50 1.04 Mlig455_061369

Neo: -

Age: -

 MAN2C1 0.959 - - - - 0.959 - Mlig455_061369 {REF} {Length: 4885} {TRANSSPLICED} {Pfam: Glycosyl hydrolases family 38 N-terminal domain [PF01074.24, score=252.5]; Glycosyl hydrolases family 38 C-terminal domain [PF07748.15, score=92.6]; Alpha mannosidase middle domain [PF09261.13, score=67.9]} {Human: ENSG00000140400, MAN2C1, mannosidase alpha class 2C member 1, [RH, Score=611, Expect=0.0]} {Mouse: ENSMUSG00000032295, Man2c1, mannosidase, alpha, class 2C, member 1, [RH, Score=605, Expect=0.0]} {Smed: dd_Smed_v6_7449_0_11, dd_Smed_v6_7449_0_11, [RH, Score=734, Expect=0.0]} {RNA1509_13703} {RNA1310_2504.1, RNA1509_13703} {RNA1509_13703, RNA815_715}
9. MligTC455_13221 46 0.95 Mlig455_061047

Neo: -

Age: -

 0.954 - - - - 0.954 - Mlig455_061047 {REF} {Length: 1448} {NoTransDecoderORF} {RNA1310_147989}
10. MligTC455_14398 10 0.21 Mlig455_056592

Neo: -

Age: -

 0.952 - - - - 0.952 - Mlig455_056592 {REF} {Length: 814} {NoTransDecoderORF}
11. MligTC455_38928 28 0.59 Mlig455_046983

Neo: -

Age: -

 0.952 - - - - 0.952 - Mlig455_046983 {REF} {Length: 445} {NoTransDecoderORF} {RNA1509_25556} {RNA1310_73151} {RNA815_48752}
12. MligTC455_42583 148 3.09 Mlig455_006623

Neo: -

Age: Up-Down-Down

 MOSPD1 0.952 - - - - - 0.952 Mlig455_006623 {REF} {Length: 2507} {TRANSSPLICED} {Pfam: MSP (Major sperm protein) domain [PF00635.28, score=49.6]} {Human: ENSG00000101928, MOSPD1, motile sperm domain containing 1, [RH, Score=93.6, Expect=1e-22]} {Mouse: ENSMUSG00000023074, Mospd1, motile sperm domain containing 1, [RH, Score=95.5, Expect=2e-23]} {RNA1509_17503} {RNA1310_37601, RNA1509_17503} {RNA1509_17503, RNA815_17755}
13. MligTC455_37323 125 2.61 Mlig455_041545

Neo: -

Age: -

 ANGEL2 0.951 - - - - 0.951 - Mlig455_041545 {REF} {Length: 2606} {TRANSSPLICED} {Pfam: Endonuclease/Exonuclease/phosphatase family [PF03372.25, score=66.2]} {Human: ENSG00000174606, ANGEL2, angel homolog 2, [RH, Score=210, Expect=3e-60]} {Mouse: ENSMUSG00000026634, Angel2, angel homolog 2, [RH, Score=215, Expect=3e-62]} {Dmel: FBgn0016762, angel, [RH, Score=107, Expect=4e-25]} {Celegans: WBGene00020955, angl-1, ANGeL-like deadenylase, [RH, Score=119, Expect=2e-28]} {Smed: dd_Smed_v6_9800_0_1, dd_Smed_v6_9800_0_1, [RH, Score=238, Expect=2e-72]} {RNA1509_11711} {RNA1310_14328} {RNA815_4890}
14. MligTC455_44057 140 2.92 Mlig455_007132

Neo: -

Age: -

 PBX4 0.951 - - - - 0.951 - Mlig455_007132 {REF} {Length: 2410} {Pfam: Homeobox KN domain [PF05920.13, score=45.0]; Homeodomain [PF00046.31, score=44.6]} {Human: ENSG00000105717, PBX4, PBX homeobox 4, [Score=57.0, Expect=4e-08]; ENSG00000225987, PBX2, PBX homeobox 2, [Score=55.8, Expect=1e-07]; ENSG00000224952, PBX2, PBX homeobox 2, [Score=55.8, Expect=1e-07]; ENSG00000206315, PBX2, PBX homeobox 2, [Score=55.8, Expect=1e-07]; ENSG00000204304, PBX2, PBX homeobox 2, [Score=55.8, Expect=1e-07]; ENSG00000232005, PBX2, PBX homeobox 2, [Score=55.8, Expect=1e-07]; ENSG00000236353, PBX2, PBX homeobox 2, [Score=55.8, Expect=1e-07]; ENSG00000237344, PBX2, PBX homeobox 2, [Score=55.8, Expect=1e-07]; ENSG00000185630, PBX1, PBX homeobox 1, [Score=55.1, Expect=2e-07]} {Mouse: ENSMUSG00000034673, Pbx2, pre B cell leukemia homeobox 2, [Score=55.5, Expect=8e-08]; ENSMUSG00000031860, Pbx4, pre B cell leukemia homeobox 4, [Score=55.1, Expect=1e-07]; ENSMUSG00000052534, Pbx1, pre B cell leukemia homeobox 1, [Score=55.1, Expect=1e-07]; ENSMUSG00000038718, Pbx3, pre B cell leukemia homeobox 3, [Score=53.1, Expect=4e-07]} {Dmel: FBgn0000611, exd, extradenticle, [Score=56.2, Expect=4e-08]} {Celegans: WBGene00000443, ceh-20, Homeobox protein ceh-20, [Score=49.7, Expect=3e-06]} {Smed: dd_Smed_v6_7324_0_1, dd_Smed_v6_7324_0_1, [RH, Score=98.6, Expect=4e-22]} {RNA1310_13235} {RNA815_16233}
15. MligTC455_15589 7 0.14 Mlig455_018037

Neo: -

Age: Down-Up-Down

 0.95 - - - - 0.950 - Mlig455_018037 {REF} {Length: 3443} {TRANSSPLICED} {Smed: dd_Smed_v6_6099_0_1, dd_Smed_v6_6099_0_1, [Score=87.8, Expect=2e-19]} {RNA1509_9501} {RNA1310_8454} {RNA815_6408}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA