M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_49216

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_49216 3879 80.81 Mlig455_001315

Neo: -

Age: -

 MAN2B1 Mlig455_001315 {REF} {Length: 4036} {Pfam: Glycosyl hydrolases family 38 C-terminal domain [PF07748.15, score=94.6]; Glycosyl hydrolases family 38 N-terminal domain [PF01074.24, score=71.2]; Alpha mannosidase middle domain [PF09261.13, score=65.1]; Glycosyl hydrolases family 38 C-terminal beta sandwich domain [PF17677.3, score=28.3]} {Human: ENSG00000104774, MAN2B1, mannosidase alpha class 2B member 1, [Score=478, Expect=2e-154]} {Mouse: ENSMUSG00000005142, Man2b1, mannosidase 2, alpha B1, [Score=442, Expect=1e-140]} {Dmel: FBgn0027611, LManII, Lysosomal alpha-mannosidase II, [Score=449, Expect=9e-143]} {Celegans: WBGene00018877, aman-1, Alpha-mannosidase, [Score=337, Expect=4e-102]} {Smed: dd_Smed_v6_1942_0_1, dd_Smed_v6_1942_0_1, [Score=461, Expect=1e-148]} {RNA1509_2807, RNA1509_33430, RNA1509_41597, RNA1509_584} {RNA1310_3642, RNA1509_2807, RNA1509_33430, RNA1509_41597, RNA1509_584} {RNA1509_2807, RNA1509_33430, RNA1509_41597, RNA1509_584, RNA815_805.1}

Cumulative graph for MligTC455_49216

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 0.14 6.467 0.79153 1.00000
RegionR2 -0.371 6.467 0.19305 0.55000
RegionR3 0.373 6.467 0.09833 0.55017
RegionR4 0.032 6.467 0.90132 1.00000
RegionR5 -0.419 6.467 0.05740 0.20647
RegionR6 -0.03 6.467 0.89724 1.00000
RegionR7 -0.146 6.467 0.61520 1.00000
RegionR8 0.421 6.467 0.21712 0.82243

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 0.159 6.467 0.81101 1.00000
RegenerationR2 -0.088 6.467 0.74329 0.97096
RegenerationR3 0.111 6.467 0.68137 0.94093
RegenerationR4 0.443 6.467 0.11205 0.51358
RegenerationR5 0.679 6.467 0.01122 0.18695
RegenerationR6 0.408 6.467 0.14511 0.46681
RegenerationBL -0.795 6.467 0.01227 0.11328
RegenerationTP 0.044 6.467 0.88948 1.00000


Genes with expression patterns similar to MligTC455_49216

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_49216 3879 80.81 Mlig455_001315

Neo: -

Age: -

 MAN2B1 6 1.000 1.000 1.000 1.000 1.000 1.000 Mlig455_001315 {REF} {Length: 4036} {Pfam: Glycosyl hydrolases family 38 C-terminal domain [PF07748.15, score=94.6]; Glycosyl hydrolases family 38 N-terminal domain [PF01074.24, score=71.2]; Alpha mannosidase middle domain [PF09261.13, score=65.1]; Glycosyl hydrolases family 38 C-terminal beta sandwich domain [PF17677.3, score=28.3]} {Human: ENSG00000104774, MAN2B1, mannosidase alpha class 2B member 1, [Score=478, Expect=2e-154]} {Mouse: ENSMUSG00000005142, Man2b1, mannosidase 2, alpha B1, [Score=442, Expect=1e-140]} {Dmel: FBgn0027611, LManII, Lysosomal alpha-mannosidase II, [Score=449, Expect=9e-143]} {Celegans: WBGene00018877, aman-1, Alpha-mannosidase, [Score=337, Expect=4e-102]} {Smed: dd_Smed_v6_1942_0_1, dd_Smed_v6_1942_0_1, [Score=461, Expect=1e-148]} {RNA1509_2807, RNA1509_33430, RNA1509_41597, RNA1509_584} {RNA1310_3642, RNA1509_2807, RNA1509_33430, RNA1509_41597, RNA1509_584} {RNA1509_2807, RNA1509_33430, RNA1509_41597, RNA1509_584, RNA815_805.1}
2. MligTC455_24084 9162 190.87 Mlig455_068331

Neo: -

Age: logFC(26M/2M)=0.316

Region-enriched R3: 1.883/0.00000

 ACHE 3.315 0.725 - - 0.865 0.958 0.767 Mlig455_068331 {REF} {Length: 2518} {Pfam: Carboxylesterase family [PF00135.30, score=356.7]} {Human: ENSG00000087085, ACHE, acetylcholinesterase (Cartwright blood group), [Score=237, Expect=7e-69]} {Mouse: ENSMUSG00000023328, Ache, acetylcholinesterase, [Score=227, Expect=2e-65]} {Dmel: FBgn0000024, Ace, Acetylcholine esterase, [Score=196, Expect=4e-54]} {Celegans: WBGene00000035, ace-1, Acetylcholinesterase 1, [Score=228, Expect=4e-66]} {Smed: dd_Smed_v6_4800_0_2, dd_Smed_v6_4800_0_2, [Score=183, Expect=1e-49]} {RNA1509_18646, RNA1509_195, RNA1509_28401} {RNA1310_9229, RNA1509_18646, RNA1509_195, RNA1509_28401} {RNA1509_18646, RNA1509_195, RNA1509_28401, RNA815_3141.1}
3. MligTC455_16063 772 16.08 Mlig455_026358, Mlig455_052707

Neo: -

Age: Down-Up-Down, logFC(26M/2M)=-0.372

Region-enriched R3: 2.027/0.00000
Region-enriched R4: 1.354/0.01177

 SLC39A14 2.496 - - - 0.700 0.958 0.838

Mlig455_026358 {REF} {Length: 2562} {Pfam: ZIP Zinc transporter [PF02535.24, score=177.7]} {Human: ENSG00000104635, SLC39A14, solute carrier family 39 member 14, [Score=187, Expect=4e-53]; ENSG00000196950, SLC39A10, solute carrier family 39 member 10, [Score=179, Expect=3e-48]} {Mouse: ENSMUSG00000022094, Slc39a14, solute carrier family 39 (zinc transporter), member 14, [Score=185, Expect=3e-52]} {Dmel: FBgn0036461, Zip71B, Zinc/iron regulated transporter-related protein 71B, [Score=144, Expect=5e-37]} {Celegans: WBGene00021936, zipt-20, Zrt (ZRT), Irt-(IRT-) like Protein Transporter, [Score=161, Expect=3e-44]} {Smed: dd_Smed_v6_8605_0_1, dd_Smed_v6_8605_0_1, [Score=213, Expect=2e-63]} {RNA1509_35963, RNA1509_39667} {RNA1310_11294, RNA1509_39667} {RNA1509_39667, RNA815_5274}

Mlig455_052707 {REF} {Length: 2641} {Pfam: ZIP Zinc transporter [PF02535.24, score=177.7]} {Human: ENSG00000104635, SLC39A14, solute carrier family 39 member 14, [Score=187, Expect=4e-53]; ENSG00000196950, SLC39A10, solute carrier family 39 member 10, [Score=179, Expect=3e-48]} {Mouse: ENSMUSG00000022094, Slc39a14, solute carrier family 39 (zinc transporter), member 14, [Score=185, Expect=3e-52]} {Dmel: FBgn0036461, Zip71B, Zinc/iron regulated transporter-related protein 71B, [Score=144, Expect=5e-37]} {Celegans: WBGene00021936, zipt-20, Zrt (ZRT), Irt-(IRT-) like Protein Transporter, [Score=161, Expect=3e-44]} {Smed: dd_Smed_v6_8605_0_1, dd_Smed_v6_8605_0_1, [Score=213, Expect=2e-63]} {RNA1509_35963, RNA1509_50293} {RNA1310_11294, RNA1509_35963, RNA1509_50293} {RNA1509_35963, RNA1509_50293, RNA815_5274}
4. MligTC455_16062 635 13.22 Mlig455_026314

Neo: -

Age: logFC(26M/2M)=-0.923

Region-enriched R3: 2.095/0.00000
Region-enriched R4: 1.472/0.00808

 SLC39A14 1.791 - - - - 0.957 0.834 Mlig455_026314 {REF} {Length: 5567} {Pfam: ZIP Zinc transporter [PF02535.24, score=127.9]} {Human: ENSG00000104635, SLC39A14, solute carrier family 39 member 14, [Score=138, Expect=1e-36]} {Mouse: ENSMUSG00000022094, Slc39a14, solute carrier family 39 (zinc transporter), member 14, [Score=135, Expect=5e-36]} {Dmel: FBgn0036461, Zip71B, Zinc/iron regulated transporter-related protein 71B, [Score=95.5, Expect=1e-21]} {Celegans: WBGene00021936, zipt-20, Zrt (ZRT), Irt-(IRT-) like Protein Transporter, [Score=114, Expect=8e-29]} {Smed: dd_Smed_v6_8605_0_1, dd_Smed_v6_8605_0_1, [Score=162, Expect=2e-46]} {RNA1509_16476} {RNA1310_12919} {RNA815_5274}
5. MligTC455_53731 3617 75.35 Mlig455_055710

Neo: -

Age: Down-Down-Up, logFC(26M/2M)=-0.226

 PPP2CA 1.678 - - - - 0.954 0.724 Mlig455_055710 {REF} {Length: 1990} {Pfam: Calcineurin-like phosphoesterase [PF00149.30, score=119.5]} {Human: ENSG00000113575, PPP2CA, protein phosphatase 2 catalytic subunit alpha, [RH, Score=590, Expect=0.0]; ENSG00000104695, PPP2CB, protein phosphatase 2 catalytic subunit beta, [RH, Score=588, Expect=0.0]} {Mouse: ENSMUSG00000020349, Ppp2ca, protein phosphatase 2 (formerly 2A), catalytic subunit, alpha isoform, [RH, Score=589, Expect=0.0]; ENSMUSG00000009630, Ppp2cb, protein phosphatase 2 (formerly 2A), catalytic subunit, beta isoform, [RH, Score=588, Expect=0.0]} {Dmel: FBgn0004177, mts, microtubule star, [RH, Score=583, Expect=0.0]} {Celegans: WBGene00002363, let-92, Serine/threonine-protein phosphatase 2A catalytic subunit, [RH, Score=565, Expect=0.0]} {Smed: dd_Smed_v6_1280_0_1, dd_Smed_v6_1280_0_1, [RH, Score=580, Expect=0.0]} {RNA1509_11843, RNA1509_1577, RNA1509_18656, RNA1509_31544, RNA1509_40862, RNA1509_48411} {RNA1310_28799, RNA1509_11843, RNA1509_18656, RNA1509_31544, RNA1509_40862, RNA1509_48411} {RNA1509_11843, RNA1509_18656, RNA1509_31544, RNA1509_40862, RNA1509_48411, RNA815_5316.1}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA