Data search


search
Exact
Search

Results for MligTC455_49460

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_49460 730 15.22 Mlig455_038163, Mlig455_038287

Neo: -

Age: -

ABCB6

Mlig455_038163 {REF} {Length: 3680} {TRANSSPLICED} {Pfam: Mitochondrial ABC-transporter N-terminal five TM region [PF16185.7, score=197.9]; ABC transporter [PF00005.29, score=120.4]; ABC transporter transmembrane region [PF00664.25, score=117.7]; RecF/RecN/SMC N terminal domain [PF02463.21, score=21.7]; RsgA GTPase [PF03193.18, score=19.0]} {Human: ENSG00000115657, ABCB6, ATP binding cassette subfamily B member 6 (Langereis blood group), [RH, Score=729, Expect=0.0]} {Mouse: ENSMUSG00000026198, Abcb6, ATP-binding cassette, sub-family B (MDR/TAP), member 6, [RH, Score=729, Expect=0.0]} {Dmel: FBgn0038376, Hmt-1, Heavy metal tolerance factor 1, [RH, Score=815, Expect=0.0]} {Celegans: WBGene00001815, hmt-1, Heavy Metal Tolerance factor; Heavy metal tolerance factor 1, [RH, Score=627, Expect=0.0]} {Smed: dd_Smed_v6_7348_0_1, dd_Smed_v6_7348_0_1, [RH, Score=820, Expect=0.0]} {RNA1509_5979} {RNA1310_2900} {RNA815_4379}

Mlig455_038287 {REF} {Length: 3683} {TRANSSPLICED} {Pfam: Mitochondrial ABC-transporter N-terminal five TM region [PF16185.7, score=201.8]; ABC transporter [PF00005.29, score=120.4]; ABC transporter transmembrane region [PF00664.25, score=118.6]; RecF/RecN/SMC N terminal domain [PF02463.21, score=21.7]; RsgA GTPase [PF03193.18, score=18.9]} {Human: ENSG00000115657, ABCB6, ATP binding cassette subfamily B member 6 (Langereis blood group), [RH, Score=726, Expect=0.0]} {Mouse: ENSMUSG00000026198, Abcb6, ATP-binding cassette, sub-family B (MDR/TAP), member 6, [RH, Score=726, Expect=0.0]} {Dmel: FBgn0038376, Hmt-1, Heavy metal tolerance factor 1, [RH, Score=818, Expect=0.0]} {Celegans: WBGene00001815, hmt-1, Heavy Metal Tolerance factor; Heavy metal tolerance factor 1, [RH, Score=627, Expect=0.0]} {Smed: dd_Smed_v6_7348_0_1, dd_Smed_v6_7348_0_1, [RH, Score=823, Expect=0.0]} {RNA1509_5979} {RNA1310_2900, RNA1509_5979} {RNA1509_5979, RNA815_4379}

Cumulative graph for MligTC455_49460

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 0.104 4.097 0.90661 1.00000
RegionR2 0.723 4.097 0.12272 0.43391
RegionR3 -0.122 4.097 0.75549 1.00000
RegionR4 -0.182 4.097 0.67960 0.97416
RegionR5 0.513 4.097 0.13984 0.38475
RegionR6 -0.072 4.097 0.85963 1.00000
RegionR7 -0.066 4.097 0.89051 1.00000
RegionR8 -0.899 4.097 0.14449 0.69355

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -7.615 4.097 0.03167 0.63300
RegenerationR2 -0.38 4.097 0.35775 0.78759
RegenerationR3 0.552 4.097 0.24283 0.67753
RegenerationR4 0.395 4.097 0.39643 0.81086
RegenerationR5 0.084 4.097 0.84412 1.00000
RegenerationR6 0.032 4.097 0.94905 1.00000
RegenerationBL 0.752 4.097 0.15099 0.46432
RegenerationTP 0.455 4.097 0.43954 0.85978


Genes with expression patterns similar to MligTC455_49460

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_49460 730 15.22 Mlig455_038163, Mlig455_038287

Neo: -

Age: -

ABCB6 6 1.000 1.000 1.000 1.000 1.000 1.000

Mlig455_038163 {REF} {Length: 3680} {TRANSSPLICED} {Pfam: Mitochondrial ABC-transporter N-terminal five TM region [PF16185.7, score=197.9]; ABC transporter [PF00005.29, score=120.4]; ABC transporter transmembrane region [PF00664.25, score=117.7]; RecF/RecN/SMC N terminal domain [PF02463.21, score=21.7]; RsgA GTPase [PF03193.18, score=19.0]} {Human: ENSG00000115657, ABCB6, ATP binding cassette subfamily B member 6 (Langereis blood group), [RH, Score=729, Expect=0.0]} {Mouse: ENSMUSG00000026198, Abcb6, ATP-binding cassette, sub-family B (MDR/TAP), member 6, [RH, Score=729, Expect=0.0]} {Dmel: FBgn0038376, Hmt-1, Heavy metal tolerance factor 1, [RH, Score=815, Expect=0.0]} {Celegans: WBGene00001815, hmt-1, Heavy Metal Tolerance factor; Heavy metal tolerance factor 1, [RH, Score=627, Expect=0.0]} {Smed: dd_Smed_v6_7348_0_1, dd_Smed_v6_7348_0_1, [RH, Score=820, Expect=0.0]} {RNA1509_5979} {RNA1310_2900} {RNA815_4379}

Mlig455_038287 {REF} {Length: 3683} {TRANSSPLICED} {Pfam: Mitochondrial ABC-transporter N-terminal five TM region [PF16185.7, score=201.8]; ABC transporter [PF00005.29, score=120.4]; ABC transporter transmembrane region [PF00664.25, score=118.6]; RecF/RecN/SMC N terminal domain [PF02463.21, score=21.7]; RsgA GTPase [PF03193.18, score=18.9]} {Human: ENSG00000115657, ABCB6, ATP binding cassette subfamily B member 6 (Langereis blood group), [RH, Score=726, Expect=0.0]} {Mouse: ENSMUSG00000026198, Abcb6, ATP-binding cassette, sub-family B (MDR/TAP), member 6, [RH, Score=726, Expect=0.0]} {Dmel: FBgn0038376, Hmt-1, Heavy metal tolerance factor 1, [RH, Score=818, Expect=0.0]} {Celegans: WBGene00001815, hmt-1, Heavy Metal Tolerance factor; Heavy metal tolerance factor 1, [RH, Score=627, Expect=0.0]} {Smed: dd_Smed_v6_7348_0_1, dd_Smed_v6_7348_0_1, [RH, Score=823, Expect=0.0]} {RNA1509_5979} {RNA1310_2900, RNA1509_5979} {RNA1509_5979, RNA815_4379}
2. MligTC455_11025 325 6.78 Mlig455_031021

Neo: -

Age: logFC(26M/2M)=0.287

TENM3 0.98 - - - 0.980 - - Mlig455_031021 {REF} {Length: 8812} {Pfam: EGF-like domain [PF07974.15, score=53.1]; RHS Repeat [PF05593.16, score=35.9]; GHH signature containing HNH/Endo VII superfamily nuclease toxin [PF15636.8, score=29.7]; Domain of unknown function (DUF4595) with porin-like fold [PF15283.8, score=20.3]; RHS protein [PF03527.16, score=19.5]} {Human: ENSG00000218336, TENM3, teneurin transmembrane protein 3, [RH, Score=785, Expect=0.0]; ENSG00000145934, TENM2, teneurin transmembrane protein 2, [RH, Score=763, Expect=0.0]} {Mouse: ENSMUSG00000031561, Tenm3, teneurin transmembrane protein 3, [RH, Score=791, Expect=0.0]; ENSMUSG00000049336, Tenm2, teneurin transmembrane protein 2, [RH, Score=767, Expect=0.0]} {Dmel: FBgn0004449, Ten-m, Tenascin major, [RH, Score=787, Expect=0.0]} {Celegans: WBGene00006498, ten-1, Teneurin-1, [RH, Score=452, Expect=5e-128]} {Smed: dd_Smed_v6_5439_0_2, dd_Smed_v6_5439_0_2, [RH, Score=776, Expect=0.0]} {RNA1509_13046} {RNA1310_260} {RNA815_8740}
3. MligTC455_42193 205 4.28 Mlig455_014809

Neo: -

Age: Down-Up-Down, logFC(26M/2M)=1.778

0.971 - - - 0.971 - - Mlig455_014809 {REF} {Length: 1752} {Pfam: Glycosyltransferase sugar-binding region containing DXD motif [PF04488.17, score=40.7]; Capsular polysaccharide synthesis protein [PF05704.14, score=19.2]} {Smed: dd_Smed_v6_11922_0_1, dd_Smed_v6_11922_0_1, [Score=113, Expect=2e-29]} {RNA1509_15387} {RNA1310_18607} {RNA815_7321}
4. MligTC455_34144 457 9.51 Mlig455_016401

Neo: -

Age: -

Regeneration-upregulated BL: 2.357

Regeneration-enriched BL: 2.357

0.964 - - - 0.964 - - Mlig455_016401 {REF} {Length: 3321} {TRANSSPLICED} {RNA1509_40576} {RNA1310_8602, RNA1509_40576} {RNA1509_40576, RNA815_10261}
5. MligTC455_47498 779 16.24 Mlig455_044949

Neo: -

Age: logFC(26M/2M)=-0.267

PRKCSH 0.954 - - - 0.954 - - Mlig455_044949 {REF} {Length: 2510} {TRANSSPLICED} {Pfam: Glucosidase II beta subunit-like [PF12999.9, score=141.8]; Glucosidase II beta subunit-like protein [PF13015.8, score=86.1]; Glucosidase II beta subunit-like protein [PF07915.15, score=37.6]; EF hand [PF00036.34, score=25.9]; EF-hand domain pair [PF13499.8, score=25.3]; EF-hand domain [PF13405.8, score=23.7]; EF hand [PF13202.8, score=20.0]} {Human: ENSG00000130175, PRKCSH, protein kinase C substrate 80K-H, [RH, Score=359, Expect=2e-118]} {Mouse: ENSMUSG00000003402, Prkcsh, protein kinase C substrate 80K-H, [RH, Score=359, Expect=2e-118]} {Dmel: FBgn0032643, GCS2beta, Glucosidase 2 beta subunit, [RH, Score=280, Expect=1e-87]} {Celegans: WBGene00014249, ZK1307.8, [RH, Score=342, Expect=3e-112]} {Smed: dd_Smed_v6_1730_0_1, dd_Smed_v6_1730_0_1, [RH, Score=408, Expect=2e-138]} {RNA1509_24901, RNA1509_27022, RNA1509_3103, RNA1509_41296} {RNA1310_16892, RNA1509_24901, RNA1509_27022, RNA1509_41296} {RNA1509_24901, RNA1509_27022, RNA1509_41296, RNA815_6798}
6. MligTC455_35495 586 12.21 Mlig455_023069

Neo: -

Age: -

PCF11 0.953 - - - 0.953 - - Mlig455_023069 {REF} {Length: 4117} {TRANSSPLICED} {Pfam: CID domain [PF04818.15, score=32.6]} {Human: ENSG00000165494, PCF11, PCF11, cleavage and polyadenylation factor subunit, [RH, Score=91.3, Expect=6e-18]} {Mouse: ENSMUSG00000041328, Pcf11, PCF11 cleavage and polyadenylation factor subunit, [RH, Score=92.4, Expect=2e-18]} {Dmel: FBgn0264962, Pcf11, Protein 1 of cleavage and polyadenylation factor 1, [Score=78.6, Expect=3e-14]} {Smed: dd_Smed_v6_3280_0_1, dd_Smed_v6_3280_0_1, [RH, Score=191, Expect=3e-50]} {RNA1509_13594} {RNA1310_1865.1} {RNA815_5333}
7. MligTC455_34582 350 7.3 Mlig455_068190

Neo: -

Age: -

ZDHHC21 0.952 - - - 0.952 - - Mlig455_068190 {REF} {Length: 3221} {TRANSSPLICED} {Pfam: DHHC palmitoyltransferase [PF01529.22, score=108.4]} {Human: ENSG00000175893, ZDHHC21, zinc finger DHHC-type containing 21, [RH, Score=107, Expect=6e-27]} {Mouse: ENSMUSG00000028403, Zdhhc21, zinc finger, DHHC domain containing 21, [RH, Score=105, Expect=1e-26]} {Dmel: FBgn0034057, CG8314, [Score=90.1, Expect=1e-20]} {Celegans: WBGene00018009, dhhc-3, Palmitoyltransferase, [Score=73.6, Expect=4e-15]} {Smed: dd_Smed_v6_6973_0_1, dd_Smed_v6_6973_0_1, [RH, Score=172, Expect=6e-52]} {RNA1509_18665} {RNA1310_23572, RNA1509_18665} {RNA1509_18665, RNA815_12326}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA