M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_49524

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_49524 1119 23.32 Mlig455_057592

Neo: -

Age: Up-Down-Up, logFC(26M/2M)=0.319

 Mlig455_057592 {REF} {Length: 1135} {NoTransDecoderORF} {RNA1509_25669} {RNA1310_46582, RNA1509_25669} {RNA1509_25669, RNA815_11569.1}

Cumulative graph for MligTC455_49524

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 0.067 4.77 0.92668 1.00000
RegionR2 -0.04 4.77 0.91705 1.00000
RegionR3 0.436 4.77 0.14857 0.65463
RegionR4 0.04 4.77 0.90667 1.00000
RegionR5 0.148 4.77 0.60321 0.96062
RegionR6 0.035 4.77 0.91485 1.00000
RegionR7 -0.549 4.77 0.17663 0.77097
RegionR8 -0.137 4.77 0.76040 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -7.704 4.77 0.02409 0.59347
RegenerationR2 -0.138 4.77 0.69747 0.95527
RegenerationR3 0.036 4.77 0.92203 1.00000
RegenerationR4 0.251 4.77 0.50481 0.87148
RegenerationR5 0.47 4.77 0.17792 0.60676
RegenerationR6 0.514 4.77 0.17461 0.50714
RegenerationBL 0.28 4.77 0.52636 0.88684
RegenerationTP 0.096 4.77 0.84333 1.00000


Genes with expression patterns similar to MligTC455_49524

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_49524 1119 23.32 Mlig455_057592

Neo: -

Age: Up-Down-Up, logFC(26M/2M)=0.319

 6 1.000 1.000 1.000 1.000 1.000 1.000 Mlig455_057592 {REF} {Length: 1135} {NoTransDecoderORF} {RNA1509_25669} {RNA1310_46582, RNA1509_25669} {RNA1509_25669, RNA815_11569.1}
2. MligTC455_46232 862 17.96 Mlig455_041377

Neo: -

Age: -

 DNAJB12 1.797 - - - 0.847 0.950 - Mlig455_041377 {REF} {Length: 2592} {TRANSSPLICED} {Pfam: DnaJ domain [PF00226.33, score=89.8]; Domain of unknown function (DUF1977) [PF09320.13, score=81.0]} {Human: ENSG00000148719, DNAJB12, DnaJ heat shock protein family (Hsp40) member B12, [RH, Score=279, Expect=7e-91]; ENSG00000164031, DNAJB14, DnaJ heat shock protein family (Hsp40) member B14, [RH, Score=278, Expect=9e-91]} {Mouse: ENSMUSG00000020109, Dnajb12, DnaJ heat shock protein family (Hsp40) member B12, [RH, Score=286, Expect=8e-94]; ENSMUSG00000074212, Dnajb14, DnaJ heat shock protein family (Hsp40) member B14, [RH, Score=280, Expect=2e-91]} {Dmel: FBgn0038195, CG3061, [RH, Score=291, Expect=3e-96]} {Celegans: WBGene00001019, dnj-1, DnaJ homolog subfamily B member 1, [RH, Score=261, Expect=3e-84]} {Smed: dd_Smed_v6_3790_0_1, dd_Smed_v6_3790_0_1, [RH, Score=246, Expect=6e-79]} {RNA1509_30945, RNA1509_31998, RNA1509_9746} {RNA1310_22974, RNA1509_30945, RNA1509_31998, RNA1509_9746} {RNA1509_30945, RNA1509_31998, RNA1509_9746, RNA815_10289}
3. MligTC455_11973 2442 50.87 Mlig455_051139, Mlig455_051213

Neo: -

Age: logFC(26M/2M)=-0.313

 AP3M1 0.972 - - - 0.972 - -

Mlig455_051139 {REF} {Length: 2476} {Pfam: Adaptor complexes medium subunit family [PF00928.23, score=215.1]; Clathrin adaptor complex small chain [PF01217.22, score=39.3]} {Human: ENSG00000185009, AP3M1, adaptor related protein complex 3 subunit mu 1, [RH, Score=543, Expect=0.0]; ENSG00000070718, AP3M2, adaptor related protein complex 3 subunit mu 2, [RH, Score=516, Expect=0.0]} {Mouse: ENSMUSG00000021824, Ap3m1, adaptor-related protein complex 3, mu 1 subunit, [RH, Score=540, Expect=0.0]; ENSMUSG00000031539, Ap3m2, adaptor-related protein complex 3, mu 2 subunit, [RH, Score=515, Expect=0.0]} {Dmel: FBgn0000330, cm, carmine, [RH, Score=509, Expect=3e-180]} {Celegans: WBGene00000164, apm-3, AdaPtin, Mu/medium chain (Clathrin associated complex), [RH, Score=460, Expect=3e-161]} {Smed: dd_Smed_v6_6368_0_1, dd_Smed_v6_6368_0_1, [RH, Score=474, Expect=1e-166]} {RNA1509_4174, RNA1509_9522} {RNA1310_7893, RNA1509_4174, RNA1509_9522} {RNA1509_4174, RNA1509_9522, RNA815_2536.1}

Mlig455_051213 {REF} {Length: 1957} {Pfam: Adaptor complexes medium subunit family [PF00928.23, score=214.4]; Clathrin adaptor complex small chain [PF01217.22, score=39.3]} {Human: ENSG00000185009, AP3M1, adaptor related protein complex 3 subunit mu 1, [RH, Score=538, Expect=0.0]; ENSG00000070718, AP3M2, adaptor related protein complex 3 subunit mu 2, [RH, Score=512, Expect=0.0]} {Mouse: ENSMUSG00000021824, Ap3m1, adaptor-related protein complex 3, mu 1 subunit, [RH, Score=536, Expect=0.0]; ENSMUSG00000031539, Ap3m2, adaptor-related protein complex 3, mu 2 subunit, [RH, Score=510, Expect=0.0]} {Dmel: FBgn0000330, cm, carmine, [RH, Score=504, Expect=3e-178]} {Celegans: WBGene00000164, apm-3, AdaPtin, Mu/medium chain (Clathrin associated complex), [RH, Score=459, Expect=9e-161]} {Smed: dd_Smed_v6_6368_0_1, dd_Smed_v6_6368_0_1, [RH, Score=468, Expect=3e-164]} {RNA1509_59137, RNA1509_9522} {RNA1310_7893, RNA1509_59137} {RNA1509_59137, RNA815_2536.1}
4. MligTC455_53685 685 14.26 Mlig455_023897

Neo: -

Age: logFC(26M/2M)=-0.181

 0.97 - - - 0.970 - - Mlig455_023897 {REF} {Length: 1478} {TRANSSPLICED} {RNA1509_10149, RNA1509_17426, RNA1509_33604} {RNA1310_44592.2, RNA1509_10149, RNA1509_17426, RNA1509_33604} {RNA1509_10149, RNA1509_17426, RNA1509_33604, RNA815_23130}
5. MligTC455_33228 1366 28.46 Mlig455_016099

Neo: -

Age: -

Region-enriched R5: 1.003/0.00238

 ARHGAP1 0.953 - - - 0.953 - - Mlig455_016099 {REF} {Length: 3566} {TRANSSPLICED} {Pfam: RhoGAP domain [PF00620.29, score=138.5]; Divergent CRAL/TRIO domain [PF13716.8, score=136.1]; CRAL/TRIO domain [PF00650.22, score=31.0]} {Human: ENSG00000175220, ARHGAP1, Rho GTPase activating protein 1, [Score=340, Expect=8e-113]} {Mouse: ENSMUSG00000027247, Arhgap1, Rho GTPase activating protein 1, [Score=331, Expect=2e-109]} {Dmel: FBgn0036257, RhoGAP68F, Rho GTPase activating protein at 68F, [Score=233, Expect=2e-71]} {Celegans: WBGene00012203, rga-1, Rho GTPase Activating protein, [Score=259, Expect=2e-81]} {Smed: dd_Smed_v6_9467_0_1, dd_Smed_v6_9467_0_1, [Score=437, Expect=7e-151]} {RNA1509_8721} {RNA1310_18962.1} {RNA815_13378}
6. MligTC455_53666 1759 36.64 Mlig455_040811

Neo: -

Age: -

 ACAT1 0.952 - - - 0.952 - - Mlig455_040811 {REF} {Length: 4843} {TRANSSPLICED} {Pfam: Mpp10 protein [PF04006.14, score=422.2]; Thiolase, N-terminal domain [PF00108.25, score=320.7]; Thiolase, C-terminal domain [PF02803.20, score=134.6]; Family of unknown function (DUF5447) [PF17525.4, score=28.0]; Beta-ketoacyl synthase, N-terminal domain [PF00109.28, score=21.5]} {Human: ENSG00000075239, ACAT1, acetyl-CoA acetyltransferase 1, [RH, Score=408, Expect=2e-129]} {Mouse: ENSMUSG00000032047, Acat1, acetyl-Coenzyme A acetyltransferase 1, [RH, Score=407, Expect=4e-129]} {Dmel: FBgn0029969, CG10932, [RH, Score=434, Expect=2e-139]} {Celegans: WBGene00002183, kat-1, Acetyl-CoA acetyltransferase homolog, mitochondrial, [RH, Score=432, Expect=5e-139]} {Smed: dd_Smed_v6_1377_0_1, dd_Smed_v6_1377_0_1, [RH, Score=452, Expect=2e-146]} {RNA1509_7248} {RNA1310_18235, RNA1509_7248} {RNA1509_7248, RNA815_10304}
7. MligTC455_52986 1261 26.27 Mlig455_020265, Mlig455_022497

Neo: -

Age: -

 PRKAA2 0.951 - - - 0.951 - -

Mlig455_020265 {REF} {Length: 4377} {TRANSSPLICED} {tRNA: Ala(AGC), score=56.0} {Pfam: Protein kinase domain [PF00069.27, score=256.3]; Protein tyrosine and serine/threonine kinase [PF07714.19, score=153.5]; Adenylate sensor of SNF1-like protein kinase [PF16579.7, score=41.0]; ABC1 atypical kinase-like domain [PF03109.18, score=29.4]; Kinase-like [PF14531.8, score=28.0]; RIO1 family [PF01163.24, score=22.5]} {Human: ENSG00000162409, PRKAA2, protein kinase AMP-activated catalytic subunit alpha 2, [RH, Score=601, Expect=0.0]; ENSG00000132356, PRKAA1, protein kinase AMP-activated catalytic subunit alpha 1, [RH, Score=579, Expect=0.0]} {Mouse: ENSMUSG00000028518, Prkaa2, protein kinase, AMP-activated, alpha 2 catalytic subunit, [RH, Score=597, Expect=0.0]; ENSMUSG00000050697, Prkaa1, protein kinase, AMP-activated, alpha 1 catalytic subunit, [RH, Score=575, Expect=0.0]} {Dmel: FBgn0023169, AMPKalpha, AMP-activated protein kinase alpha subunit, [RH, Score=585, Expect=0.0]} {Celegans: WBGene00020142, aak-2, 5'-AMP-activated protein kinase catalytic subunit alpha-2, [RH, Score=565, Expect=0.0]} {Smed: dd_Smed_v6_2538_0_1, dd_Smed_v6_2538_0_1, [RH, Score=588, Expect=0.0]} {RNA1509_33279, RNA1509_38411, RNA1509_56756, RNA1509_8981} {RNA1310_13304.1, RNA1509_33279, RNA1509_38411, RNA1509_56756, RNA1509_8981} {RNA1509_33279, RNA1509_38411, RNA1509_56756, RNA1509_8981, RNA815_4575.1}

Mlig455_022497 {REF} {Length: 3864} {TRANSSPLICED} {Pfam: Protein kinase domain [PF00069.27, score=256.2]; Protein tyrosine and serine/threonine kinase [PF07714.19, score=153.6]; Adenylate sensor of SNF1-like protein kinase [PF16579.7, score=41.1]; ABC1 atypical kinase-like domain [PF03109.18, score=29.4]; Kinase-like [PF14531.8, score=27.6]; RIO1 family [PF01163.24, score=22.5]} {Human: ENSG00000162409, PRKAA2, protein kinase AMP-activated catalytic subunit alpha 2, [RH, Score=601, Expect=0.0]; ENSG00000132356, PRKAA1, protein kinase AMP-activated catalytic subunit alpha 1, [RH, Score=580, Expect=0.0]} {Mouse: ENSMUSG00000028518, Prkaa2, protein kinase, AMP-activated, alpha 2 catalytic subunit, [RH, Score=597, Expect=0.0]; ENSMUSG00000050697, Prkaa1, protein kinase, AMP-activated, alpha 1 catalytic subunit, [RH, Score=575, Expect=0.0]} {Dmel: FBgn0023169, AMPKalpha, AMP-activated protein kinase alpha subunit, [RH, Score=590, Expect=0.0]} {Celegans: WBGene00020142, aak-2, 5'-AMP-activated protein kinase catalytic subunit alpha-2, [RH, Score=568, Expect=0.0]} {Smed: dd_Smed_v6_2538_0_1, dd_Smed_v6_2538_0_1, [RH, Score=593, Expect=0.0]} {RNA1509_8981} {RNA1310_13304.1} {RNA815_4575.1}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA