TomoSeq data search

Data search

Results for MligTC455_49607

Cluster

Total UMI counts

Global CPM

Transcripts

Categories

Human homolog

Annotation

MligTC455_49607

556

11.58

Mlig455_033471

Neo: -

Age: Down-Up-Down, logFC(26M/2M)=-0.333

Mlig455_033471 {REF} {Length: 2672} {TRANSSPLICED} {Pfam: 7 transmembrane receptor (rhodopsin family) [PF00001.23, score=44.8]} {Smed: dd_Smed_v6_56204_0_1, dd_Smed_v6_56204_0_1, [Score=54.7, Expect=4e-08]} {RNA1509_28576, RNA1509_42427, RNA1509_51633, RNA1509_56656, RNA1509_7331} {RNA1310_4752.1, RNA1509_28576, RNA1509_42427, RNA1509_51633, RNA1509_56656, RNA1509_7331} {RNA1509_28576, RNA1509_42427, RNA1509_51633, RNA1509_56656, RNA1509_7331, RNA815_1657.1}

Cumulative graph for MligTC455_49607

Region-enriched expression

Region	logFC	logCPM	Pvalue	FDR	Specificity
RegionR1	-1.366	3.836	0.32941	0.97627
RegionR2	-0.061	3.836	0.91551	1.00000
RegionR3	-0.064	3.836	0.90007	1.00000
RegionR4	0.684	3.836	0.25972	0.56185
RegionR5	0.052	3.836	0.91008	1.00000
RegionR6	-0.53	3.836	0.32134	0.91052
RegionR7	0.833	3.836	0.10786	0.62336
RegionR8	0.451	3.836	0.49032	1.00000

Regeneration-enriched expression

Region	logFC	logCPM	PValue	FDR	Specificity
RegenerationR1	-6.086	3.836	0.23402	0.96368
RegenerationR2	0.092	3.836	0.85923	1.00000
RegenerationR3	-0.717	3.836	0.20841	0.64396
RegenerationR4	-0.455	3.836	0.43692	0.83482
RegenerationR5	-0.684	3.836	0.21928	0.65377
RegenerationR6	-1.517	3.836	0.02007	0.17517
RegenerationBL	-2.157	3.836	0.00337	0.05043
RegenerationTP	-0.366	3.836	0.53900	0.92537

Genes with expression patterns similar to MligTC455_49607

Nr.	Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Σ Spearman correlations	Int1	Int2	Int3	Reg1	Reg2	Reg3	Annotation
1.	MligTC455_49607	556	11.58	Mlig455_033471	Neo: - Age: Down-Up-Down, logFC(26M/2M)=-0.333		6	1.000	1.000	1.000	1.000	1.000	1.000	Mlig455_033471 {REF} {Length: 2672} {TRANSSPLICED} {Pfam: 7 transmembrane receptor (rhodopsin family) [PF00001.23, score=44.8]} {Smed: dd_Smed_v6_56204_0_1, dd_Smed_v6_56204_0_1, [Score=54.7, Expect=4e-08]} {RNA1509_28576, RNA1509_42427, RNA1509_51633, RNA1509_56656, RNA1509_7331} {RNA1310_4752.1, RNA1509_28576, RNA1509_42427, RNA1509_51633, RNA1509_56656, RNA1509_7331} {RNA1509_28576, RNA1509_42427, RNA1509_51633, RNA1509_56656, RNA1509_7331, RNA815_1657.1}
2.	MligTC455_37034	924	19.25	Mlig455_064076	Neo: - Age: Down-Down-Up, logFC(26M/2M)=-0.580		1.849	-	-	-	0.895	-	0.954	Mlig455_064076 {REF} {Length: 2077} {RNA1509_15229, RNA1509_38414} {RNA1310_12845.1, RNA1509_15229, RNA1509_38414} {RNA1509_15229, RNA1509_38414, RNA815_5731}
3.	MligTC455_29323	239	4.98	Mlig455_053598	Neo: - Age: -	NOTCH4	1.796	-	-	-	0.846	-	0.950	Mlig455_053598 {REF} {Length: 4886} {Pfam: EGF-like domain [PF00008.29, score=147.1]; Human growth factor-like EGF [PF12661.9, score=87.2]; Ankyrin repeats (3 copies) [PF12796.9, score=85.5]; Ankyrin repeats (many copies) [PF13857.8, score=77.4]; Ankyrin repeat [PF00023.32, score=64.8]; Ankyrin repeats (many copies) [PF13637.8, score=64.3]; Ankyrin repeat [PF13606.8, score=59.4]; LNR domain [PF00066.19, score=53.5]; EGF-like domain [PF07974.15, score=44.0]; Calcium-binding EGF domain [PF07645.17, score=31.7]} {Human: ENSG00000235396, NOTCH4, notch 4, [Score=312, Expect=1e-87]; ENSG00000206312, NOTCH4, notch 4, [Score=312, Expect=1e-87]; ENSG00000234876, NOTCH4, notch 4, [Score=311, Expect=1e-87]; ENSG00000223355, NOTCH4, notch 4, [Score=311, Expect=1e-87]; ENSG00000204301, NOTCH4, notch 4, [Score=311, Expect=1e-87]; ENSG00000232339, NOTCH4, notch 4, [Score=311, Expect=1e-87]; ENSG00000134250, NOTCH2, notch 2, [Score=309, Expect=1e-86]; ENSG00000238196, NOTCH4, notch 4, [Score=297, Expect=1e-84]} {Mouse: ENSMUSG00000027878, Notch2, notch 2, [Score=349, Expect=5e-100]} {Dmel: FBgn0004647, N, Notch, [Score=332, Expect=1e-94]} {Celegans: WBGene00003001, lin-12, [Score=240, Expect=6e-65]} {Smed: dd_Smed_v6_7067_0_1, dd_Smed_v6_7067_0_1, [Score=239, Expect=2e-64]} {RNA1509_20447, RNA1509_57909} {RNA1310_1718.1, RNA1509_57909} {RNA1509_57909, RNA815_12429}
4.	MligTC455_31000	1605	33.43	Mlig455_065979	Neo: - Age: logFC(26M/2M)=-0.357	MPEG1	1.791	-	-	-	0.824	-	0.967	Mlig455_065979 {REF} {Length: 3644} {Pfam: MAC/Perforin domain [PF01823.21, score=71.8]} {Human: ENSG00000197629, MPEG1, macrophage expressed 1, [Score=356, Expect=8e-112]} {Mouse: ENSMUSG00000046805, Mpeg1, macrophage expressed gene 1, [RH, Score=363, Expect=1e-114]} {Smed: dd_Smed_v6_983_0_1, dd_Smed_v6_983_0_1, [RH, Score=355, Expect=1e-112]} {RNA1509_42053, RNA1509_52362} {RNA1310_4591, RNA1509_42053} {RNA1509_42053, RNA815_1433.1}
5.	MligTC455_33342	548	11.41	Mlig455_001683	Neo: - Age: Up-Down-Down, logFC(26M/2M)=-0.324	ITPR2	1.732	-	-	-	0.776	-	0.956	Mlig455_001683 {REF} {Length: 9856} {Pfam: RIH domain [PF01365.23, score=103.5]; Inositol 1,4,5-trisphosphate/ryanodine receptor [PF08709.13, score=74.4]; RyR and IP3R Homology associated [PF08454.13, score=66.6]; MIR domain [PF02815.21, score=58.3]; Ion transport protein [PF00520.33, score=26.8]} {Human: ENSG00000123104, ITPR2, inositol 1,4,5-trisphosphate receptor type 2, [Score=211, Expect=8e-54]; ENSG00000150995, ITPR1, inositol 1,4,5-trisphosphate receptor type 1, [Score=207, Expect=2e-52]; ENSG00000096433, ITPR3, inositol 1,4,5-trisphosphate receptor type 3, [Score=204, Expect=1e-51]} {Mouse: ENSMUSG00000030287, Itpr2, inositol 1,4,5-triphosphate receptor 2, [Score=218, Expect=6e-56]; ENSMUSG00000042644, Itpr3, inositol 1,4,5-triphosphate receptor 3, [Score=212, Expect=3e-54]} {Dmel: FBgn0010051, Itp-r83A, Inositol 1,4,5,-tris-phosphate receptor, [Score=186, Expect=3e-46]} {Celegans: WBGene00002173, itr-1, Inositol 1,4,5-trisphosphate receptor itr-1, [Score=164, Expect=5e-40]} {Smed: dd_Smed_v6_3814_1_1, dd_Smed_v6_3814_1_1, [Score=1676, Expect=0.0]} {RNA1509_13093} {RNA1310_939} {RNA815_220}
6.	MligTC455_14181	1196	24.91	Mlig455_043723, Mlig455_047435	Neo: - Age: logFC(26M/2M)=-0.334		1.729	-	-	-	0.959	-	0.770	Mlig455_043723 {REF} {Length: 1333} {RNA1509_15671} {RNA1310_24777} {RNA815_10623} Mlig455_047435 {REF} {Length: 1668} {RNA1509_15671} {RNA1310_24777, RNA1509_15671} {RNA1509_15671, RNA815_10623}
7.	MligTC455_47783	422	8.78	Mlig455_031120	Neo: - Age: Down-Up-Down, logFC(26M/2M)=-0.635		1.708	-	-	-	0.752	-	0.956	Mlig455_031120 {REF} {Length: 2684} {Pfam: Mab-21 protein [PF03281.16, score=59.6]} {Smed: dd_Smed_v6_43442_0_1, dd_Smed_v6_43442_0_1, [RH, Score=63.2, Expect=1e-10]} {RNA1509_15607} {RNA1310_11311} {RNA815_5452}
8.	MligTC455_04940	326	6.8	Mlig455_037361	Neo: - Age: Down-Up-Down Region-enriched R2: 2.538/0.00218	CDKL1	0.954	-	-	-	-	-	0.954	Mlig455_037361 {REF} {Length: 4105} {Pfam: Protein kinase domain [PF00069.27, score=246.7]; Protein tyrosine and serine/threonine kinase [PF07714.19, score=120.7]; ABC1 atypical kinase-like domain [PF03109.18, score=19.0]; RIO1 family [PF01163.24, score=18.4]; Haspin like kinase domain [PF12330.10, score=17.8]} {Human: ENSG00000100490, CDKL1, cyclin dependent kinase like 1, [RH, Score=423, Expect=2e-147]; ENSG00000205111, CDKL4, cyclin dependent kinase like 4, [RH, Score=416, Expect=3e-144]} {Mouse: ENSMUSG00000020990, Cdkl1, cyclin-dependent kinase-like 1 (CDC2-related kinase), [RH, Score=423, Expect=7e-148]} {Dmel: FBgn0031730, CG7236, [RH, Score=379, Expect=3e-129]} {Celegans: WBGene00012779, cdkl-1, Cyclin-Dependent Kinase-Like, [Score=375, Expect=2e-128]} {Smed: dd_Smed_v6_9353_0_1, dd_Smed_v6_9353_0_1, [RH, Score=471, Expect=1e-166]} {RNA1509_57066} {RNA1310_3805.1, RNA1509_57066} {RNA1509_57066, RNA815_2206}
9.	MligTC455_23584	574	11.95	Mlig455_050813	Neo: - Age: Down-Down-Down, logFC(26M/2M)=-0.558	CCDC33	0.952	-	-	-	-	-	0.952	Mlig455_050813 {REF} {Length: 3399} {TRANSSPLICED} {Pfam: C2 domain [PF00168.32, score=24.3]; C-terminal membrane-localisation domain of ion-channel, VCN1 [PF16799.7, score=19.4]} {Human: ENSG00000140481, CCDC33, coiled-coil domain containing 33, [RH, Score=94.4, Expect=4e-19]} {Mouse: ENSMUSG00000037716, Ccdc33, coiled-coil domain containing 33, [Score=145, Expect=4e-35]} {Smed: dd_Smed_v6_15844_0_1, dd_Smed_v6_15844_0_1, [RH, Score=191, Expect=6e-50]} {RNA1509_7141} {RNA1310_15581.1} {RNA815_780.1}
10.	MligTC455_15881	222	4.62	Mlig455_053354, Mlig455_053359	Neo: - Age: -	DCLK3	0.951	-	-	-	-	-	0.951	Mlig455_053354 {REF} {Length: 5391} {Pfam: Protein kinase domain [PF00069.27, score=245.7]; Protein tyrosine and serine/threonine kinase [PF07714.19, score=117.8]; Doublecortin [PF03607.19, score=83.2]} {Human: ENSG00000163673, DCLK3, doublecortin like kinase 3, [RH, Score=350, Expect=8e-109]; ENSG00000133083, DCLK1, doublecortin like kinase 1, [RH, Score=347, Expect=4e-110]; ENSG00000170390, DCLK2, doublecortin like kinase 2, [RH, Score=343, Expect=4e-105]} {Mouse: ENSMUSG00000032500, Dclk3, doublecortin-like kinase 3, [RH, Score=348, Expect=3e-106]; ENSMUSG00000027797, Dclk1, doublecortin-like kinase 1, [RH, Score=347, Expect=2e-106]; ENSMUSG00000028078, Dclk2, doublecortin-like kinase 2, [RH, Score=342, Expect=5e-105]} {Dmel: FBgn0261387, CG17528, [RH, Score=297, Expect=4e-88]} {Celegans: WBGene00000553, cmk-1, Calcium/calmodulin-dependent protein kinase type 1, [Score=258, Expect=3e-78]} {Smed: dd_Smed_v6_12689_0_1, dd_Smed_v6_12689_0_1, [RH, Score=347, Expect=6e-105]} {RNA1509_51067} {RNA1310_13514} {RNA815_32297} Mlig455_053359 {REF} {Length: 4205} {TRANSSPLICED} {Pfam: Protein kinase domain [PF00069.27, score=245.7]; Protein tyrosine and serine/threonine kinase [PF07714.19, score=117.8]; Doublecortin [PF03607.19, score=83.2]} {Human: ENSG00000163673, DCLK3, doublecortin like kinase 3, [RH, Score=350, Expect=8e-109]; ENSG00000133083, DCLK1, doublecortin like kinase 1, [RH, Score=347, Expect=4e-110]; ENSG00000170390, DCLK2, doublecortin like kinase 2, [RH, Score=343, Expect=4e-105]} {Mouse: ENSMUSG00000032500, Dclk3, doublecortin-like kinase 3, [RH, Score=348, Expect=3e-106]; ENSMUSG00000027797, Dclk1, doublecortin-like kinase 1, [RH, Score=347, Expect=2e-106]; ENSMUSG00000028078, Dclk2, doublecortin-like kinase 2, [RH, Score=342, Expect=5e-105]} {Dmel: FBgn0261387, CG17528, [RH, Score=297, Expect=4e-88]} {Celegans: WBGene00000553, cmk-1, Calcium/calmodulin-dependent protein kinase type 1, [Score=258, Expect=3e-78]} {Smed: dd_Smed_v6_12689_0_1, dd_Smed_v6_12689_0_1, [RH, Score=347, Expect=6e-105]} {RNA1509_51067} {RNA1310_13514, RNA1509_51067} {RNA1509_51067, RNA815_32297}

Berezikov Lab - 2020-2021 © ERIBA