TomoSeq data search

Data search

Results for MligTC455_49648

Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Annotation
MligTC455_49648	3628	75.59	Mlig455_009869, Mlig455_029108	Neo: Int S/G2/M Age: -	DDX3X	Mlig455_009869 {REF} {Length: 4609} {Pfam: DEAD/DEAH box helicase [PF00270.31, score=170.0]; Helicase conserved C-terminal domain [PF00271.33, score=103.5]; Type III restriction enzyme, res subunit [PF04851.17, score=20.0]} {Human: ENSG00000215301, DDX3X, DEAD-box helicase 3 X-linked, [RH, Score=671, Expect=0.0]; ENSG00000067048, DDX3Y, DEAD-box helicase 3 Y-linked, [RH, Score=669, Expect=0.0]} {Mouse: ENSMUSG00000039224, D1Pas1, DNA segment, Chr 1, Pasteur Institute 1, [RH, Score=674, Expect=0.0]; ENSMUSG00000069045, Ddx3y, DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, Y-linked, [RH, Score=665, Expect=0.0]; ENSMUSG00000000787, Ddx3x, DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3, X-linked, [RH, Score=655, Expect=0.0]} {Dmel: FBgn0263231, bel, belle, [RH, Score=580, Expect=0.0]} {Celegans: WBGene00002244, laf-1, ATP-dependent RNA helicase laf-1, [RH, Score=538, Expect=0.0]} {Smed: dd_Smed_v6_2411_0_1, dd_Smed_v6_2411_0_1, [Score=630, Expect=0.0]} {RNA1509_14182, RNA1509_14448, RNA1509_1836, RNA1509_23557, RNA1509_31816, RNA1509_33954, RNA1509_50413} {RNA1310_6327, RNA1509_14182, RNA1509_14448, RNA1509_1836, RNA1509_23557, RNA1509_31816, RNA1509_33954, RNA1509_50413} {RNA1509_14182, RNA1509_14448, RNA1509_1836, RNA1509_23557, RNA1509_31816, RNA1509_33954, RNA1509_50413, RNA815_4480} Mlig455_029108 {REF} {Length: 4586} {Pfam: DEAD/DEAH box helicase [PF00270.31, score=169.9]; Helicase conserved C-terminal domain [PF00271.33, score=103.4]; Type III restriction enzyme, res subunit [PF04851.17, score=19.9]} {Human: ENSG00000215301, DDX3X, DEAD-box helicase 3 X-linked, [RH, Score=677, Expect=0.0]; ENSG00000067048, DDX3Y, DEAD-box helicase 3 Y-linked, [RH, Score=671, Expect=0.0]} {Mouse: ENSMUSG00000039224, D1Pas1, DNA segment, Chr 1, Pasteur Institute 1, [RH, Score=675, Expect=0.0]; ENSMUSG00000069045, Ddx3y, DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, Y-linked, [RH, Score=664, Expect=0.0]; ENSMUSG00000000787, Ddx3x, DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3, X-linked, [RH, Score=656, Expect=0.0]} {Dmel: FBgn0263231, bel, belle, [RH, Score=580, Expect=0.0]} {Celegans: WBGene00006888, vbh-1, Vasa-and Belle-like Helicase, [RH, Score=515, Expect=8e-175]} {Smed: dd_Smed_v6_2411_0_1, dd_Smed_v6_2411_0_1, [Score=631, Expect=0.0]} {RNA1509_1836, RNA1509_28609, RNA1509_35120, RNA1509_49210, RNA1509_7163} {RNA1310_6327, RNA1509_28609, RNA1509_35120, RNA1509_49210, RNA1509_7163} {RNA1509_28609, RNA1509_35120, RNA1509_49210, RNA1509_7163, RNA815_4480}

Cluster

Total UMI counts

Global CPM

Transcripts

Categories

Human homolog

Annotation

MligTC455_49648

3628

75.59

Mlig455_009869, Mlig455_029108

Neo: Int S/G2/M

Age: -

DDX3X

Mlig455_009869 {REF} {Length: 4609} {Pfam: DEAD/DEAH box helicase [PF00270.31, score=170.0]; Helicase conserved C-terminal domain [PF00271.33, score=103.5]; Type III restriction enzyme, res subunit [PF04851.17, score=20.0]} {Human: ENSG00000215301, DDX3X, DEAD-box helicase 3 X-linked, [RH, Score=671, Expect=0.0]; ENSG00000067048, DDX3Y, DEAD-box helicase 3 Y-linked, [RH, Score=669, Expect=0.0]} {Mouse: ENSMUSG00000039224, D1Pas1, DNA segment, Chr 1, Pasteur Institute 1, [RH, Score=674, Expect=0.0]; ENSMUSG00000069045, Ddx3y, DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, Y-linked, [RH, Score=665, Expect=0.0]; ENSMUSG00000000787, Ddx3x, DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3, X-linked, [RH, Score=655, Expect=0.0]} {Dmel: FBgn0263231, bel, belle, [RH, Score=580, Expect=0.0]} {Celegans: WBGene00002244, laf-1, ATP-dependent RNA helicase laf-1, [RH, Score=538, Expect=0.0]} {Smed: dd_Smed_v6_2411_0_1, dd_Smed_v6_2411_0_1, [Score=630, Expect=0.0]} {RNA1509_14182, RNA1509_14448, RNA1509_1836, RNA1509_23557, RNA1509_31816, RNA1509_33954, RNA1509_50413} {RNA1310_6327, RNA1509_14182, RNA1509_14448, RNA1509_1836, RNA1509_23557, RNA1509_31816, RNA1509_33954, RNA1509_50413} {RNA1509_14182, RNA1509_14448, RNA1509_1836, RNA1509_23557, RNA1509_31816, RNA1509_33954, RNA1509_50413, RNA815_4480}

Mlig455_029108 {REF} {Length: 4586} {Pfam: DEAD/DEAH box helicase [PF00270.31, score=169.9]; Helicase conserved C-terminal domain [PF00271.33, score=103.4]; Type III restriction enzyme, res subunit [PF04851.17, score=19.9]} {Human: ENSG00000215301, DDX3X, DEAD-box helicase 3 X-linked, [RH, Score=677, Expect=0.0]; ENSG00000067048, DDX3Y, DEAD-box helicase 3 Y-linked, [RH, Score=671, Expect=0.0]} {Mouse: ENSMUSG00000039224, D1Pas1, DNA segment, Chr 1, Pasteur Institute 1, [RH, Score=675, Expect=0.0]; ENSMUSG00000069045, Ddx3y, DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, Y-linked, [RH, Score=664, Expect=0.0]; ENSMUSG00000000787, Ddx3x, DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3, X-linked, [RH, Score=656, Expect=0.0]} {Dmel: FBgn0263231, bel, belle, [RH, Score=580, Expect=0.0]} {Celegans: WBGene00006888, vbh-1, Vasa-and Belle-like Helicase, [RH, Score=515, Expect=8e-175]} {Smed: dd_Smed_v6_2411_0_1, dd_Smed_v6_2411_0_1, [Score=631, Expect=0.0]} {RNA1509_1836, RNA1509_28609, RNA1509_35120, RNA1509_49210, RNA1509_7163} {RNA1310_6327, RNA1509_28609, RNA1509_35120, RNA1509_49210, RNA1509_7163} {RNA1509_28609, RNA1509_35120, RNA1509_49210, RNA1509_7163, RNA815_4480}

Cumulative graph for MligTC455_49648

Region-enriched expression

Region	logFC	logCPM	Pvalue	FDR
RegionR1	0.188	6.389	0.74315	1.00000
RegionR2	-0.059	6.389	0.87007	1.00000
RegionR3	0.244	6.389	0.41825	0.94273
RegionR4	0.856	6.389	0.01326	0.07518
RegionR5	0.197	6.389	0.49136	0.85462
RegionR6	-0.321	6.389	0.29414	0.88577
RegionR7	-0.138	6.389	0.67217	1.00000
RegionR8	-0.967	6.389	0.02158	0.28647

Regeneration-enriched expression

Region	logFC	logCPM	PValue	FDR
RegenerationR1	-1.102	6.389	0.19934	0.93959
RegenerationR2	-0.229	6.389	0.52842	0.88322
RegenerationR3	-0.153	6.389	0.68244	0.94099
RegenerationR4	-0.544	6.389	0.16223	0.59562
RegenerationR5	-0.05	6.389	0.89217	1.00000
RegenerationR6	0.954	6.389	0.01165	0.13265
RegenerationBL	0.674	6.389	0.05989	0.28439
RegenerationTP	0.279	6.389	0.49410	0.89773

Genes with expression patterns similar to MligTC455_49648

Nr.	Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Σ Spearman correlations	Int1	Int2	Int3	Reg1	Reg2	Reg3	Annotation
1.	MligTC455_49648	3628	75.59	Mlig455_009869, Mlig455_029108	Neo: Int S/G2/M Age: -	DDX3X	6	1.000	1.000	1.000	1.000	1.000	1.000	Mlig455_009869 {REF} {Length: 4609} {Pfam: DEAD/DEAH box helicase [PF00270.31, score=170.0]; Helicase conserved C-terminal domain [PF00271.33, score=103.5]; Type III restriction enzyme, res subunit [PF04851.17, score=20.0]} {Human: ENSG00000215301, DDX3X, DEAD-box helicase 3 X-linked, [RH, Score=671, Expect=0.0]; ENSG00000067048, DDX3Y, DEAD-box helicase 3 Y-linked, [RH, Score=669, Expect=0.0]} {Mouse: ENSMUSG00000039224, D1Pas1, DNA segment, Chr 1, Pasteur Institute 1, [RH, Score=674, Expect=0.0]; ENSMUSG00000069045, Ddx3y, DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, Y-linked, [RH, Score=665, Expect=0.0]; ENSMUSG00000000787, Ddx3x, DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3, X-linked, [RH, Score=655, Expect=0.0]} {Dmel: FBgn0263231, bel, belle, [RH, Score=580, Expect=0.0]} {Celegans: WBGene00002244, laf-1, ATP-dependent RNA helicase laf-1, [RH, Score=538, Expect=0.0]} {Smed: dd_Smed_v6_2411_0_1, dd_Smed_v6_2411_0_1, [Score=630, Expect=0.0]} {RNA1509_14182, RNA1509_14448, RNA1509_1836, RNA1509_23557, RNA1509_31816, RNA1509_33954, RNA1509_50413} {RNA1310_6327, RNA1509_14182, RNA1509_14448, RNA1509_1836, RNA1509_23557, RNA1509_31816, RNA1509_33954, RNA1509_50413} {RNA1509_14182, RNA1509_14448, RNA1509_1836, RNA1509_23557, RNA1509_31816, RNA1509_33954, RNA1509_50413, RNA815_4480} Mlig455_029108 {REF} {Length: 4586} {Pfam: DEAD/DEAH box helicase [PF00270.31, score=169.9]; Helicase conserved C-terminal domain [PF00271.33, score=103.4]; Type III restriction enzyme, res subunit [PF04851.17, score=19.9]} {Human: ENSG00000215301, DDX3X, DEAD-box helicase 3 X-linked, [RH, Score=677, Expect=0.0]; ENSG00000067048, DDX3Y, DEAD-box helicase 3 Y-linked, [RH, Score=671, Expect=0.0]} {Mouse: ENSMUSG00000039224, D1Pas1, DNA segment, Chr 1, Pasteur Institute 1, [RH, Score=675, Expect=0.0]; ENSMUSG00000069045, Ddx3y, DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, Y-linked, [RH, Score=664, Expect=0.0]; ENSMUSG00000000787, Ddx3x, DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3, X-linked, [RH, Score=656, Expect=0.0]} {Dmel: FBgn0263231, bel, belle, [RH, Score=580, Expect=0.0]} {Celegans: WBGene00006888, vbh-1, Vasa-and Belle-like Helicase, [RH, Score=515, Expect=8e-175]} {Smed: dd_Smed_v6_2411_0_1, dd_Smed_v6_2411_0_1, [Score=631, Expect=0.0]} {RNA1509_1836, RNA1509_28609, RNA1509_35120, RNA1509_49210, RNA1509_7163} {RNA1310_6327, RNA1509_28609, RNA1509_35120, RNA1509_49210, RNA1509_7163} {RNA1509_28609, RNA1509_35120, RNA1509_49210, RNA1509_7163, RNA815_4480}
2.	MligTC455_44388	1062	22.13	Mlig455_051293	Neo: - Age: Down-Up-Up Region-enriched R4: 1.101/0.04615	NSRP1	0.967	-	-	-	-	0.967	-	Mlig455_051293 {REF} {Length: 1898} {TRANSSPLICED} {Pfam: Coiled-coil domain-containing protein 55 (DUF2040) [PF09745.11, score=114.9]} {Human: ENSG00000126653, NSRP1, nuclear speckle splicing regulatory protein 1, [RH, Score=124, Expect=3e-31]} {Mouse: ENSMUSG00000037958, Nsrp1, nuclear speckle regulatory protein 1, [RH, Score=114, Expect=1e-27]} {Dmel: FBgn0030474, CG15747, [RH, Score=137, Expect=3e-37]} {Celegans: WBGene00007627, ccdc-55, Nuclear speckle splicing regulatory protein 1 homolog, [RH, Score=68.6, Expect=1e-12]} {RNA1509_11681, RNA1509_22583} {RNA1310_29453, RNA1509_11681, RNA1509_22583} {RNA1509_11681, RNA1509_22583, RNA815_4125.1}

Nr.

Cluster

Total UMI counts

Global CPM

Transcripts

Categories

Human homolog

Σ Spearman correlations

Int1

Int2

Int3

Reg1

Reg2

Reg3

Annotation

MligTC455_49648

3628

75.59

Mlig455_009869, Mlig455_029108

Neo: Int S/G2/M

Age: -

DDX3X

1.000

MligTC455_44388

1062

22.13

Mlig455_051293

Neo: -

Age: Down-Up-Up

Region-enriched R4: 1.101/0.04615

NSRP1

0.967

Mlig455_051293 {REF} {Length: 1898} {TRANSSPLICED} {Pfam: Coiled-coil domain-containing protein 55 (DUF2040) [PF09745.11, score=114.9]} {Human: ENSG00000126653, NSRP1, nuclear speckle splicing regulatory protein 1, [RH, Score=124, Expect=3e-31]} {Mouse: ENSMUSG00000037958, Nsrp1, nuclear speckle regulatory protein 1, [RH, Score=114, Expect=1e-27]} {Dmel: FBgn0030474, CG15747, [RH, Score=137, Expect=3e-37]} {Celegans: WBGene00007627, ccdc-55, Nuclear speckle splicing regulatory protein 1 homolog, [RH, Score=68.6, Expect=1e-12]} {RNA1509_11681, RNA1509_22583} {RNA1310_29453, RNA1509_11681, RNA1509_22583} {RNA1509_11681, RNA1509_22583, RNA815_4125.1}