M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_49914

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_49914 12 0.25 Mlig455_042817

Neo: -

Age: -

 Mlig455_042817 {REF} {Length: 999} {NoTransDecoderORF} {RNA1509_60021} {RNA1310_30537, RNA1509_60021} {RNA1509_60021, RNA815_8730.1}

Cumulative graph for MligTC455_49914

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -0.268 0.679 1.00000 1.00000
RegionR2 1.162 0.679 1.00000 1.00000
RegionR3 -0.284 0.679 0.99995 1.00000
RegionR4 -1.693 0.679 0.99980 1.00000
RegionR5 -1.202 0.679 0.99986 1.00000
RegionR6 -0.916 0.679 0.99989 1.00000
RegionR7 0.975 0.679 0.99998 1.00000
RegionR8 2.228 0.679 0.99995 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -1.134 0.679 0.99993 1.00000
RegenerationR2 1.763 0.679 1.00000 1.00000
RegenerationR3 1.641 0.679 1.00000 1.00000
RegenerationR4 -0.902 0.679 0.99990 1.00000
RegenerationR5 1.539 0.679 1.00000 1.00000
RegenerationR6 0.717 0.679 1.00000 1.00000
RegenerationBL -2.859 0.679 0.99990 1.00000
RegenerationTP -1.7 0.679 0.99991 1.00000


Genes with expression patterns similar to MligTC455_49914

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_49914 12 0.25 Mlig455_042817

Neo: -

Age: -

 1 - - - - 1.000 - Mlig455_042817 {REF} {Length: 999} {NoTransDecoderORF} {RNA1509_60021} {RNA1310_30537, RNA1509_60021} {RNA1509_60021, RNA815_8730.1}
2. MligTC455_37412 95 1.98 Mlig455_036605, Mlig455_036645

Neo: -

Age: -

 ADRA2A 0.974 - - - - 0.974 -

Mlig455_036605 {REF} {Length: 3015} {Pfam: 7 transmembrane receptor (rhodopsin family) [PF00001.23, score=97.8]} {Human: ENSG00000150594, ADRA2A, adrenoceptor alpha 2A, [Score=55.5, Expect=2e-07]; ENSG00000082556, OPRK1, opioid receptor kappa 1, [Score=55.1, Expect=2e-07]} {Mouse: ENSMUSG00000033717, Adra2a, adrenergic receptor, alpha 2a, [Score=56.6, Expect=5e-08]} {Dmel: FBgn0053517, Dop2R, Dopamine 2-like receptor, [Score=64.7, Expect=1e-10]} {Celegans: WBGene00016037, dop-6, DOPamine receptor, [Score=52.4, Expect=7e-07]} {Smed: dd_Smed_v6_23525_0_1, dd_Smed_v6_23525_0_1, [RH, Score=136, Expect=5e-35]} {RNA1310_57451} {RNA815_47300}

Mlig455_036645 {REF} {Length: 3203} {Pfam: 7 transmembrane receptor (rhodopsin family) [PF00001.23, score=97.0]} {Human: ENSG00000150594, ADRA2A, adrenoceptor alpha 2A, [Score=55.5, Expect=2e-07]; ENSG00000082556, OPRK1, opioid receptor kappa 1, [Score=55.1, Expect=1e-07]} {Mouse: ENSMUSG00000033717, Adra2a, adrenergic receptor, alpha 2a, [Score=56.6, Expect=4e-08]} {Dmel: FBgn0053517, Dop2R, Dopamine 2-like receptor, [Score=63.2, Expect=4e-10]} {Celegans: WBGene00016037, dop-6, DOPamine receptor, [Score=52.4, Expect=6e-07]} {Smed: dd_Smed_v6_23525_0_1, dd_Smed_v6_23525_0_1, [RH, Score=136, Expect=6e-35]} {RNA1310_57451} {RNA815_47300}
3. MligTC455_14501 55 1.15 Mlig455_047255

Neo: Int S/G2/M

Age: -

Region-enriched R5: 2.570/0.00646

 0.97 - - - - 0.970 - Mlig455_047255 {REF} {Length: 1057} {TRANSSPLICED} {RNA1509_21707, RNA1509_56030} {RNA1310_23619, RNA1509_21707, RNA1509_56030} {RNA1509_21707, RNA1509_56030, RNA815_11671}
4. MligTC455_03396 12 0.24 Mlig455_028834

Neo: -

Age: -

 0.966 - - - - 0.966 - Mlig455_028834 {REF} {Length: 404} {NoTransDecoderORF}
5. MligTC455_32128 27 0.57 Mlig455_046912

Neo: -

Age: -

 0.965 - - - - 0.965 - Mlig455_046912 {REF} {Length: 1745} {Pfam: Leucine zipper [PF15294.8, score=20.3]} {RNA1509_43362} {RNA1310_20993} {RNA815_38793}
6. MligTC455_22612 109 2.26 Mlig455_026956

Neo: -

Age: -

 FYN 0.963 - - - - 0.963 - Mlig455_026956 {REF} {Length: 4578} {Pfam: Protein tyrosine and serine/threonine kinase [PF07714.19, score=252.5]; Protein kinase domain [PF00069.27, score=163.9]; SH3 domain [PF00018.30, score=35.6]; Variant SH3 domain [PF07653.19, score=34.4]; SH2 domain [PF00017.26, score=33.2]; Variant SH3 domain [PF14604.8, score=30.8]; Bacterial SH3 domain [PF08239.13, score=24.4]; ABC1 atypical kinase-like domain [PF03109.18, score=18.9]; Kinase-like [PF14531.8, score=18.8]} {Human: ENSG00000010810, FYN, FYN proto-oncogene, Src family tyrosine kinase, [Score=285, Expect=4e-89]; ENSG00000101336, HCK, HCK proto-oncogene, Src family tyrosine kinase, [Score=275, Expect=6e-86]; ENSG00000182866, LCK, LCK proto-oncogene, Src family tyrosine kinase, [Score=272, Expect=1e-84]} {Mouse: ENSMUSG00000019843, Fyn, Fyn proto-oncogene, [Score=284, Expect=4e-89]; ENSMUSG00000000409, Lck, lymphocyte protein tyrosine kinase, [Score=275, Expect=1e-85]; ENSMUSG00000014932, Yes1, YES proto-oncogene 1, Src family tyrosine kinase, [Score=270, Expect=1e-83]} {Dmel: FBgn0262733, Src64B, Src oncogene at 64B, [Score=274, Expect=3e-85]} {Celegans: WBGene00005077, src-1, Tyrosine protein-kinase src-1, [Score=284, Expect=6e-90]} {Smed: dd_Smed_v6_3363_0_1, dd_Smed_v6_3363_0_1, [Score=310, Expect=9e-100]} {RNA1509_37079} {RNA1310_14637, RNA1509_37079} {RNA1509_37079, RNA815_4860}
7. MligTC455_25953 61 1.27 Mlig455_009250, Mlig455_037047

Neo: -

Age: Down-Up-Down

 0.96 - - - - 0.960 -

Mlig455_009250 {REF} {Length: 3181} {Pfam: Amiloride-sensitive sodium channel [PF00858.26, score=109.0]} {Smed: dd_Smed_v6_22533_0_1, dd_Smed_v6_22533_0_1, [Score=94.4, Expect=2e-20]} {RNA1509_31312} {RNA1310_16385} {RNA815_10372}

Mlig455_037047 {REF} {Length: 3284} {TRANSSPLICED} {Pfam: Amiloride-sensitive sodium channel [PF00858.26, score=109.0]} {Smed: dd_Smed_v6_22533_0_1, dd_Smed_v6_22533_0_1, [Score=94.4, Expect=2e-20]} {RNA1509_31312} {RNA1310_16385} {RNA815_10372}
8. MligTC455_36159 12 0.24 Mlig455_038776, Mlig455_067680

Neo: -

Age: -

 0.955 - - - - 0.955 -

Mlig455_038776 {REF} {Length: 1184} {Smed: dd_Smed_v6_47583_0_1, dd_Smed_v6_47583_0_1, [RH, Score=80.9, Expect=3e-18]}

Mlig455_067680 {REF} {Length: 5269} {Pfam: Immunoglobulin domain [PF13895.8, score=62.2]; Immunoglobulin domain [PF13927.8, score=45.8]; Immunoglobulin I-set domain [PF07679.18, score=33.0]; F5/8 type C domain [PF00754.27, score=32.4]; Immunoglobulin domain [PF00047.27, score=25.2]; Ig-like C2-type domain [PF06328.13, score=23.4]; Immunoglobulin V-set domain [PF07686.19, score=23.3]; Izumo-like Immunoglobulin domain [PF16706.7, score=23.0]; Sad1 / UNC-like C-terminal [PF07738.15, score=18.8]} {RNA1310_51630} {RNA815_49405}
9. MligTC455_06959 13 0.26 Mlig455_054346

Neo: -

Age: -

 0.953 - - - - 0.953 - Mlig455_054346 {REF} {Length: 3898} {Celegans: WBGene00013762, Y113G7B.12, [Score=55.1, Expect=2e-07]} {RNA1310_120823} {RNA815_63491}
10. MligTC455_47018 21 0.43 Mlig455_057664

Neo: -

Age: -

 0.951 - - - - 0.951 - Mlig455_057664 {REF} {Length: 1530} {RNA1509_57646} {RNA1310_33223} {RNA815_39352}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA