TomoSeq data search

Data search

Results for MligTC455_49931

Cluster

Total UMI counts

Global CPM

Transcripts

Categories

Human homolog

Annotation

MligTC455_49931

557

11.60

Mlig455_061174

Neo: -

Age: -

FBXO40

Mlig455_061174 {REF} {Length: 3178} {Pfam: TRAF-like zinc-finger [PF15965.7, score=66.2]; F-box [PF15966.7, score=30.7]; F-box domain [PF00646.35, score=24.6]; F-box-like [PF12937.9, score=22.4]} {Human: ENSG00000163833, FBXO40, F-box protein 40, [RH, Score=77.4, Expect=2e-14]; ENSG00000118496, FBXO30, F-box protein 30, [RH, Score=75.9, Expect=7e-14]} {Mouse: ENSMUSG00000047746, Fbxo40, F-box protein 40, [RH, Score=77.4, Expect=1e-14]} {Celegans: WBGene00015673, C10E2.2, [RH, Score=53.5, Expect=2e-07]} {Smed: dd_Smed_v6_11811_0_6, dd_Smed_v6_11811_0_6, [RH, Score=78.2, Expect=3e-15]} {RNA1509_17215, RNA1509_42861} {RNA1310_16619, RNA1509_17215, RNA1509_42861} {RNA1509_17215, RNA1509_42861, RNA815_5398.1}

Cumulative graph for MligTC455_49931

Region-enriched expression

Region	logFC	logCPM	Pvalue	FDR	Specificity
RegionR1	-0.252	3.87	0.83517	1.00000
RegionR2	0.113	3.87	0.84411	1.00000
RegionR3	-0.535	3.87	0.29311	0.83533
RegionR4	0.026	3.87	0.96256	1.00000
RegionR5	0.797	3.87	0.05885	0.21039
RegionR6	0.229	3.87	0.62641	1.00000
RegionR7	-0.26	3.87	0.67391	1.00000
RegionR8	-0.116	3.87	0.87324	1.00000

Regeneration-enriched expression

Region	logFC	logCPM	PValue	FDR	Specificity
RegenerationR1	-6.743	3.87	0.12563	0.85633
RegenerationR2	0.559	3.87	0.27540	0.72030
RegenerationR3	0.684	3.87	0.23506	0.66921
RegenerationR4	0.113	3.87	0.84308	1.00000
RegenerationR5	0.444	3.87	0.38337	0.78841
RegenerationR6	-0.072	3.87	0.90052	1.00000
RegenerationBL	0.694	3.87	0.22960	0.58022
RegenerationTP	-0.166	3.87	0.81636	1.00000

Genes with expression patterns similar to MligTC455_49931

Nr.	Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Σ Spearman correlations	Int1	Int2	Int3	Reg1	Reg2	Reg3	Annotation
1.	MligTC455_49931	557	11.6	Mlig455_061174	Neo: - Age: -	FBXO40	6	1.000	1.000	1.000	1.000	1.000	1.000	Mlig455_061174 {REF} {Length: 3178} {Pfam: TRAF-like zinc-finger [PF15965.7, score=66.2]; F-box [PF15966.7, score=30.7]; F-box domain [PF00646.35, score=24.6]; F-box-like [PF12937.9, score=22.4]} {Human: ENSG00000163833, FBXO40, F-box protein 40, [RH, Score=77.4, Expect=2e-14]; ENSG00000118496, FBXO30, F-box protein 30, [RH, Score=75.9, Expect=7e-14]} {Mouse: ENSMUSG00000047746, Fbxo40, F-box protein 40, [RH, Score=77.4, Expect=1e-14]} {Celegans: WBGene00015673, C10E2.2, [RH, Score=53.5, Expect=2e-07]} {Smed: dd_Smed_v6_11811_0_6, dd_Smed_v6_11811_0_6, [RH, Score=78.2, Expect=3e-15]} {RNA1509_17215, RNA1509_42861} {RNA1310_16619, RNA1509_17215, RNA1509_42861} {RNA1509_17215, RNA1509_42861, RNA815_5398.1}
2.	MligTC455_52882	325	6.78	Mlig455_018278	Neo: - Age: -		1.786	0.834	-	-	-	-	0.952	Mlig455_018278 {REF} {Length: 3774} {TRANSSPLICED} {RNA1509_55279} {RNA1310_9272} {RNA815_18292}
3.	MligTC455_30502	2241	46.69	Mlig455_069268	Neo: - Age: Down-Up-Down, logFC(26M/2M)=-0.201	CAPN9	0.961	-	-	-	0.961	-	-	Mlig455_069268 {REF} {Length: 3008} {Pfam: Calpain family cysteine protease [PF00648.23, score=408.3]; Calpain large subunit, domain III [PF01067.24, score=140.5]; EF hand [PF00036.34, score=40.0]; EF-hand domain [PF13405.8, score=31.3]; EF-hand domain pair [PF13499.8, score=21.0]} {Human: ENSG00000135773, CAPN9, calpain 9, [Score=545, Expect=0.0]; ENSG00000092529, CAPN3, calpain 3, [Score=534, Expect=4e-180]} {Mouse: ENSMUSG00000031981, Capn9, calpain 9, [Score=540, Expect=0.0]; ENSMUSG00000079110, Capn3, calpain 3, [Score=526, Expect=2e-177]} {Dmel: FBgn0025866, CalpB, Calpain-B, [Score=587, Expect=0.0]} {Celegans: WBGene00000542, clp-1, Calpain clp-1, [Score=437, Expect=7e-143]} {Smed: dd_Smed_v6_1971_0_1, dd_Smed_v6_1971_0_1, [RH, Score=766, Expect=0.0]} {RNA1509_16068} {RNA1310_5831.1} {RNA815_2479.1}
4.	MligTC455_18105	622	12.97	Mlig455_027235	Neo: - Age: -	RNF144A	0.958	-	-	-	0.958	-	-	Mlig455_027235 {REF} {Length: 2276} {TRANSSPLICED} {Pfam: IBR domain, a half RING-finger domain [PF01485.23, score=57.7]} {Human: ENSG00000151692, RNF144A, ring finger protein 144A, [RH, Score=251, Expect=3e-81]} {Mouse: ENSMUSG00000020642, Rnf144a, ring finger protein 144A, [RH, Score=250, Expect=4e-81]; ENSMUSG00000038068, Rnf144b, ring finger protein 144B, [RH, Score=238, Expect=3e-76]} {Dmel: FBgn0053144, CG33144, [RH, Score=216, Expect=2e-62]} {Celegans: WBGene00020462, T12E12.1, Potential E3 ubiquitin-protein ligase ariadne-2, [Score=61.2, Expect=4e-10]} {Smed: dd_Smed_v6_7986_0_1, dd_Smed_v6_7986_0_1, [Score=73.6, Expect=3e-14]} {RNA1509_45575} {RNA1310_15378.1, RNA1509_45575} {RNA1509_45575, RNA815_22066}
5.	MligTC455_32729	499	10.39	Mlig455_015659	Neo: - Age: -	KIF6	0.957	-	-	-	-	0.957	-	Mlig455_015659 {REF} {Length: 4782} {TRANSSPLICED} {Pfam: Kinesin motor domain [PF00225.25, score=321.7]; Microtubule binding [PF16796.7, score=90.7]} {Human: ENSG00000164627, KIF6, kinesin family member 6, [RH, Score=744, Expect=0.0]} {Mouse: ENSMUSG00000023999, Kif6, kinesin family member 6, [RH, Score=754, Expect=0.0]} {Dmel: FBgn0004380, Klp64D, Kinesin-like protein at 64D, [Score=242, Expect=2e-67]} {Celegans: WBGene00002230, klp-20, Kinesin-like protein, [Score=233, Expect=8e-65]} {Smed: dd_Smed_v6_11012_0_1, dd_Smed_v6_11012_0_1, [RH, Score=685, Expect=0.0]} {RNA1509_12990} {RNA1310_5256} {RNA815_9688}
6.	MligTC455_48394	194	4.04	Mlig455_027131	Neo: - Age: Down-Up-Down		0.95	-	-	-	-	-	0.950	Mlig455_027131 {REF} {Length: 771} {RNA1509_47851} {RNA1310_42785, RNA1509_47851} {RNA1509_47851, RNA815_25036}

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