M. lignano Tomo-Seq
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Results for MligTC455_50110

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_50110 95 1.98 Mlig455_058418

Neo: -

Age: Down-Down-Up

 COP1 Mlig455_058418 {REF} {Length: 2670} {Pfam: Ring finger domain [PF13639.8, score=20.6]} {Human: ENSG00000143207, COP1, COP1, E3 ubiquitin ligase, [RH, Score=47.8, Expect=2e-06]} {Smed: dd_Smed_v6_2170_0_1, dd_Smed_v6_2170_0_1, [Score=165, Expect=6e-45]} {RNA1509_12012} {RNA1310_3106} {RNA815_15680}

Cumulative graph for MligTC455_50110

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -5.506 1.732 0.25870 0.90670
RegionR2 3.388 1.732 0.00962 0.09831
RegionR3 1.433 1.732 0.20726 0.74769
RegionR4 -2.138 1.732 0.99993 1.00000
RegionR5 -1.043 1.732 0.99013 1.00000
RegionR6 0.219 1.732 0.78442 1.00000
RegionR7 1.663 1.732 0.22864 0.85074
RegionR8 1.984 1.732 0.20022 0.79773

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 7.086 1.732 0.19685 0.93585
RegenerationR2 -0.174 1.732 0.86068 1.00000
RegenerationR3 0.018 1.732 0.94842 1.00000
RegenerationR4 1.368 1.732 0.26673 0.71403
RegenerationR5 0.645 1.732 0.56809 0.89534
RegenerationR6 0.972 1.732 0.41183 0.74528
RegenerationBL 0.965 1.732 0.43516 0.80320
RegenerationTP -1.022 1.732 0.51743 0.91237


Genes with expression patterns similar to MligTC455_50110

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_50110 95 1.98 Mlig455_058418

Neo: -

Age: Down-Down-Up

 COP1 5 1.000 1.000 1.000 - 1.000 1.000 Mlig455_058418 {REF} {Length: 2670} {Pfam: Ring finger domain [PF13639.8, score=20.6]} {Human: ENSG00000143207, COP1, COP1, E3 ubiquitin ligase, [RH, Score=47.8, Expect=2e-06]} {Smed: dd_Smed_v6_2170_0_1, dd_Smed_v6_2170_0_1, [Score=165, Expect=6e-45]} {RNA1509_12012} {RNA1310_3106} {RNA815_15680}
2. MligTC455_31315 138 2.88 Mlig455_025307

Neo: -

Age: -

 0.965 - - - - - 0.965 Mlig455_025307 {REF} {Length: 2170} {NoTransDecoderORF} {RNA1509_310} {RNA1310_48541} {RNA815_20255}
3. MligTC455_40768 386 8.04 Mlig455_053989

Neo: -

Age: Down-Down-Up

 0.961 - - - - - 0.961 Mlig455_053989 {REF} {Length: 1232} {TRANSSPLICED} {Pfam: zinc-RING finger domain [PF14634.8, score=20.4]} {RNA1509_39917} {RNA1310_28122, RNA1509_39917}
4. MligTC455_44021 681 14.19 Mlig455_027402

Neo: -

Age: Down-Up-Down, logFC(26M/2M)=-0.474

 STYXL1 0.96 - - - - - 0.960 Mlig455_027402 {REF} {Length: 1736} {Pfam: Dual specificity phosphatase, catalytic domain [PF00782.22, score=65.4]; Rhodanese-like domain [PF00581.22, score=29.2]} {Human: ENSG00000127952, STYXL1, serine/threonine/tyrosine interacting like 1, [RH, Score=196, Expect=2e-60]} {Mouse: ENSMUSG00000019178, Styxl1, serine/threonine/tyrosine interacting-like 1, [RH, Score=188, Expect=1e-57]} {Dmel: FBgn0039742, CG15528, [Score=52.8, Expect=6e-08]} {Celegans: WBGene00017428, F13D11.3, [Score=57.8, Expect=5e-10]} {Smed: dd_Smed_v6_11358_0_1, dd_Smed_v6_11358_0_1, [RH, Score=251, Expect=8e-83]} {RNA1509_4392} {RNA1310_10767.2, RNA1509_4392} {RNA1509_4392, RNA815_8325.1}
5. MligTC455_21638 50 1.05 Mlig455_026393

Neo: -

Age: Down-Up-Down

 SLC6A5 0.955 - - - - - 0.955 Mlig455_026393 {REF} {Length: 1896} {Pfam: Sodium:neurotransmitter symporter family [PF00209.20, score=352.8]} {Human: ENSG00000165970, SLC6A5, solute carrier family 6 member 5, [Score=310, Expect=2e-97]} {Mouse: ENSMUSG00000039728, Slc6a5, solute carrier family 6 (neurotransmitter transporter, glycine), member 5, [Score=309, Expect=3e-97]} {Dmel: FBgn0034911, CG5549, [Score=310, Expect=6e-95]} {Celegans: WBGene00000934, dat-1, Sodium-dependent dopamine transporter, [Score=226, Expect=2e-67]} {Smed: dd_Smed_v6_10458_0_1, dd_Smed_v6_10458_0_1, [Score=276, Expect=1e-85]} {RNA1509_16390} {RNA1310_7302.2} {RNA815_18232}

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