M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_50220

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_50220 164 3.43 Mlig455_004543

Neo: -

Age: -

 NEURL2 Mlig455_004543 {REF} {Length: 1495} {TRANSSPLICED} {Pfam: Neuralized [PF07177.14, score=107.5]} {Human: ENSG00000124257, NEURL2, neuralized E3 ubiquitin protein ligase 2, [RH, Score=127, Expect=1e-34]} {Mouse: ENSMUSG00000039873, Neurl2, neuralized E3 ubiquitin protein ligase 2, [RH, Score=130, Expect=7e-36]} {Dmel: FBgn0035059, CG3894, [RH, Score=148, Expect=1e-42]} {Smed: dd_Smed_v6_10431_0_1, dd_Smed_v6_10431_0_1, [Score=54.3, Expect=3e-08]} {RNA1509_33355} {RNA1310_21592.1} {RNA815_15057}

Cumulative graph for MligTC455_50220

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -6.69 2.466 0.09617 0.65935
RegionR2 1.851 2.466 0.06950 0.32074
RegionR3 1.582 2.466 0.07143 0.47311
RegionR4 0.164 2.466 0.79441 1.00000
RegionR5 1.802 2.466 0.01555 0.08030
RegionR6 0.801 2.466 0.43724 0.99789
RegionR7 0.105 2.466 0.82954 1.00000
RegionR8 0.385 2.466 0.73224 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 0.529 2.466 0.99994 1.00000
RegenerationR2 -0.986 2.466 0.12020 0.53905
RegenerationR3 0.163 2.466 0.79941 0.98257
RegenerationR4 0.391 2.466 0.58705 0.90754
RegenerationR5 0.147 2.466 0.79208 0.98653
RegenerationR6 1.001 2.466 0.16665 0.49716
RegenerationBL -0.304 2.466 0.78069 1.00000
RegenerationTP 1.114 2.466 0.25765 0.70504


Genes with expression patterns similar to MligTC455_50220

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_50220 164 3.43 Mlig455_004543

Neo: -

Age: -

 NEURL2 6 1.000 1.000 1.000 1.000 1.000 1.000 Mlig455_004543 {REF} {Length: 1495} {TRANSSPLICED} {Pfam: Neuralized [PF07177.14, score=107.5]} {Human: ENSG00000124257, NEURL2, neuralized E3 ubiquitin protein ligase 2, [RH, Score=127, Expect=1e-34]} {Mouse: ENSMUSG00000039873, Neurl2, neuralized E3 ubiquitin protein ligase 2, [RH, Score=130, Expect=7e-36]} {Dmel: FBgn0035059, CG3894, [RH, Score=148, Expect=1e-42]} {Smed: dd_Smed_v6_10431_0_1, dd_Smed_v6_10431_0_1, [Score=54.3, Expect=3e-08]} {RNA1509_33355} {RNA1310_21592.1} {RNA815_15057}
2. MligTC455_50221 219 4.56 Mlig455_028545

Neo: -

Age: -

Region-enriched R5: 2.000/0.01742

 NEURL2 2.736 1.000 1.000 - - 0.736 - Mlig455_028545 {REF} {Length: 1529} {TRANSSPLICED} {Pfam: Neuralized [PF07177.14, score=107.5]} {Human: ENSG00000124257, NEURL2, neuralized E3 ubiquitin protein ligase 2, [RH, Score=127, Expect=1e-34]} {Mouse: ENSMUSG00000039873, Neurl2, neuralized E3 ubiquitin protein ligase 2, [RH, Score=130, Expect=7e-36]} {Dmel: FBgn0035059, CG3894, [RH, Score=148, Expect=1e-42]} {Smed: dd_Smed_v6_10431_0_1, dd_Smed_v6_10431_0_1, [Score=54.3, Expect=3e-08]} {RNA1509_33355} {RNA1310_21592.1} {RNA815_15057}
3. MligTC455_44413 161 3.36 Mlig455_039836

Neo: Neoblast, stringent

Age: -

 ORC2 0.96 - - - - - 0.960 Mlig455_039836 {REF} {Length: 2017} {Pfam: Origin recognition complex subunit 2 [PF04084.16, score=177.6]} {Human: ENSG00000115942, ORC2, origin recognition complex subunit 2, [RH, Score=160, Expect=3e-43]} {Mouse: ENSMUSG00000026037, Orc2, origin recognition complex, subunit 2, [RH, Score=156, Expect=3e-42]} {Dmel: FBgn0015270, Orc2, Origin recognition complex subunit 2, [RH, Score=149, Expect=3e-39]} {Smed: dd_Smed_v6_15022_0_2, dd_Smed_v6_15022_0_2, [RH, Score=102, Expect=8e-24]} {RNA1509_29058} {RNA1310_13947, RNA1509_29058} {RNA1509_29058, RNA815_19696}
4. MligTC455_48165 143 2.98 Mlig455_049623

Neo: Int S/G2/M

Age: -

 0.957 - - - - - 0.957 Mlig455_049623 {REF} {Length: 1140} {RNA1310_33566.1} {RNA815_30162}
5. MligTC455_18260 761 15.86 Mlig455_050054, Mlig455_050069, Mlig455_054015

Neo: -

Age: logFC(26M/2M)=0.525

Region-enriched R5: 2.227/0.00410

 WDR44 0.951 - - - - - 0.951

Mlig455_050054 {REF} {Length: 4045} {TRANSSPLICED} {Pfam: WD domain, G-beta repeat [PF00400.34, score=96.3]; Anaphase-promoting complex subunit 4 WD40 domain [PF12894.9, score=42.4]} {Human: ENSG00000131725, WDR44, WD repeat domain 44, [RH, Score=372, Expect=2e-115]} {Mouse: ENSMUSG00000036769, Wdr44, WD repeat domain 44, [RH, Score=369, Expect=1e-114]} {Dmel: FBgn0083969, CG34133, [RH, Score=367, Expect=2e-112]} {Celegans: WBGene00006369, sym-4, SYM-4, [RH, Score=323, Expect=1e-96]} {Smed: dd_Smed_v6_6175_0_2, dd_Smed_v6_6175_0_2, [RH, Score=388, Expect=9e-122]} {RNA1509_9649} {RNA1310_5900} {RNA815_7039}

Mlig455_050069 {REF} {Length: 4045} {TRANSSPLICED} {Pfam: WD domain, G-beta repeat [PF00400.34, score=96.3]; Anaphase-promoting complex subunit 4 WD40 domain [PF12894.9, score=42.4]} {Human: ENSG00000131725, WDR44, WD repeat domain 44, [RH, Score=372, Expect=2e-115]} {Mouse: ENSMUSG00000036769, Wdr44, WD repeat domain 44, [RH, Score=369, Expect=1e-114]} {Dmel: FBgn0083969, CG34133, [RH, Score=367, Expect=2e-112]} {Celegans: WBGene00006369, sym-4, SYM-4, [RH, Score=323, Expect=1e-96]} {Smed: dd_Smed_v6_6175_0_2, dd_Smed_v6_6175_0_2, [RH, Score=388, Expect=9e-122]} {RNA1509_9649} {RNA1310_5900} {RNA815_7039}

Mlig455_054015 {REF} {Length: 6043} {TRANSSPLICED} {Human: ENSG00000131725, WDR44, WD repeat domain 44, [Score=63.9, Expect=2e-10]} {Mouse: ENSMUSG00000036769, Wdr44, WD repeat domain 44, [Score=63.9, Expect=1e-10]} {Dmel: FBgn0083969, CG34133, [Score=49.7, Expect=3e-06]} {Celegans: WBGene00006369, sym-4, SYM-4, [Score=50.1, Expect=2e-06]} {Smed: dd_Smed_v6_6175_0_2, dd_Smed_v6_6175_0_2, [Score=68.9, Expect=2e-12]} {RNA1509_9649} {RNA1310_5900} {RNA815_7039}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA