TomoSeq data search

Data search

Results for MligTC455_50227

Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Annotation
MligTC455_50227	7043	146.73	Mlig455_064783	Neo: - Age: -	YBX1	Mlig455_064783 {REF} {Length: 2103} {Pfam: 'Cold-shock' DNA-binding domain [PF00313.24, score=92.6]; Ribonuclease B OB domain [PF08206.13, score=21.8]} {Human: ENSG00000065978, YBX1, Y-box binding protein 1, [RH, Score=162, Expect=3e-48]; ENSG00000060138, YBX3, Y-box binding protein 3, [RH, Score=160, Expect=6e-48]; ENSG00000006047, YBX2, Y-box binding protein 2, [RH, Score=158, Expect=2e-46]} {Mouse: ENSMUSG00000028639, Ybx1, Y box protein 1, [RH, Score=162, Expect=2e-48]; ENSMUSG00000030189, Ybx3, Y box protein 3, [RH, Score=162, Expect=5e-48]; ENSMUSG00000018554, Ybx2, Y box protein 2, [RH, Score=157, Expect=3e-46]} {Dmel: FBgn0022959, yps, ypsilon schachtel, [Score=150, Expect=6e-44]} {Celegans: WBGene00000472, cey-1, C. Elegans Y-box, [RH, Score=149, Expect=6e-45]} {Smed: dd_Smed_v6_25570_0_1, dd_Smed_v6_25570_0_1, [RH, Score=167, Expect=3e-50]} {RNA1509_53731, RNA1509_908} {RNA1310_5367.2, RNA1509_53731} {RNA1509_53731, RNA815_1641.1}

Cluster

Total UMI counts

Global CPM

Transcripts

Categories

Human homolog

Annotation

MligTC455_50227

7043

146.73

Mlig455_064783

Neo: -

Age: -

YBX1

Mlig455_064783 {REF} {Length: 2103} {Pfam: 'Cold-shock' DNA-binding domain [PF00313.24, score=92.6]; Ribonuclease B OB domain [PF08206.13, score=21.8]} {Human: ENSG00000065978, YBX1, Y-box binding protein 1, [RH, Score=162, Expect=3e-48]; ENSG00000060138, YBX3, Y-box binding protein 3, [RH, Score=160, Expect=6e-48]; ENSG00000006047, YBX2, Y-box binding protein 2, [RH, Score=158, Expect=2e-46]} {Mouse: ENSMUSG00000028639, Ybx1, Y box protein 1, [RH, Score=162, Expect=2e-48]; ENSMUSG00000030189, Ybx3, Y box protein 3, [RH, Score=162, Expect=5e-48]; ENSMUSG00000018554, Ybx2, Y box protein 2, [RH, Score=157, Expect=3e-46]} {Dmel: FBgn0022959, yps, ypsilon schachtel, [Score=150, Expect=6e-44]} {Celegans: WBGene00000472, cey-1, C. Elegans Y-box, [RH, Score=149, Expect=6e-45]} {Smed: dd_Smed_v6_25570_0_1, dd_Smed_v6_25570_0_1, [RH, Score=167, Expect=3e-50]} {RNA1509_53731, RNA1509_908} {RNA1310_5367.2, RNA1509_53731} {RNA1509_53731, RNA815_1641.1}

Cumulative graph for MligTC455_50227

Region-enriched expression

Region	logFC	logCPM	Pvalue	FDR
RegionR1	-0.746	7.291	0.08779	0.63979
RegionR2	-0.528	7.291	0.04534	0.25110
RegionR3	0.39	7.291	0.06486	0.44939
RegionR4	0.553	7.291	0.02344	0.11406
RegionR5	0.104	7.291	0.61699	0.97320
RegionR6	0.427	7.291	0.04488	0.39583
RegionR7	0.296	7.291	0.19575	0.80212
RegionR8	-0.496	7.291	0.08108	0.54035

Regeneration-enriched expression

Region	logFC	logCPM	PValue	FDR
RegenerationR1	-0.647	7.291	0.30137	0.99791
RegenerationR2	0.097	7.291	0.71302	0.96081
RegenerationR3	-0.237	7.291	0.38014	0.79061
RegenerationR4	-0.218	7.291	0.42860	0.82986
RegenerationR5	0.005	7.291	0.98354	1.00000
RegenerationR6	0.187	7.291	0.47982	0.79174
RegenerationBL	-0.046	7.291	0.85660	1.00000
RegenerationTP	-0.29	7.291	0.30774	0.75270

Genes with expression patterns similar to MligTC455_50227

Nr.	Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Σ Spearman correlations	Int1	Int2	Int3	Reg1	Reg2	Reg3	Annotation
1.	MligTC455_50227	7043	146.73	Mlig455_064783	Neo: - Age: -	YBX1	6	1.000	1.000	1.000	1.000	1.000	1.000	Mlig455_064783 {REF} {Length: 2103} {Pfam: 'Cold-shock' DNA-binding domain [PF00313.24, score=92.6]; Ribonuclease B OB domain [PF08206.13, score=21.8]} {Human: ENSG00000065978, YBX1, Y-box binding protein 1, [RH, Score=162, Expect=3e-48]; ENSG00000060138, YBX3, Y-box binding protein 3, [RH, Score=160, Expect=6e-48]; ENSG00000006047, YBX2, Y-box binding protein 2, [RH, Score=158, Expect=2e-46]} {Mouse: ENSMUSG00000028639, Ybx1, Y box protein 1, [RH, Score=162, Expect=2e-48]; ENSMUSG00000030189, Ybx3, Y box protein 3, [RH, Score=162, Expect=5e-48]; ENSMUSG00000018554, Ybx2, Y box protein 2, [RH, Score=157, Expect=3e-46]} {Dmel: FBgn0022959, yps, ypsilon schachtel, [Score=150, Expect=6e-44]} {Celegans: WBGene00000472, cey-1, C. Elegans Y-box, [RH, Score=149, Expect=6e-45]} {Smed: dd_Smed_v6_25570_0_1, dd_Smed_v6_25570_0_1, [RH, Score=167, Expect=3e-50]} {RNA1509_53731, RNA1509_908} {RNA1310_5367.2, RNA1509_53731} {RNA1509_53731, RNA815_1641.1}
2.	MligTC455_50226	13148	273.92	Mlig455_004607, Mlig455_004710	Neo: - Age: -	YBX1	5.896	0.981	0.960	0.999	0.989	0.993	0.974	Mlig455_004607 {REF} {Length: 2081} {Pfam: 'Cold-shock' DNA-binding domain [PF00313.24, score=92.6]; Ribonuclease B OB domain [PF08206.13, score=21.8]} {Human: ENSG00000065978, YBX1, Y-box binding protein 1, [RH, Score=161, Expect=4e-48]; ENSG00000060138, YBX3, Y-box binding protein 3, [RH, Score=160, Expect=6e-48]; ENSG00000006047, YBX2, Y-box binding protein 2, [RH, Score=158, Expect=2e-46]} {Mouse: ENSMUSG00000030189, Ybx3, Y box protein 3, [RH, Score=162, Expect=9e-49]; ENSMUSG00000028639, Ybx1, Y box protein 1, [RH, Score=161, Expect=3e-48]; ENSMUSG00000018554, Ybx2, Y box protein 2, [RH, Score=157, Expect=4e-46]} {Dmel: FBgn0022959, yps, ypsilon schachtel, [Score=150, Expect=7e-44]} {Celegans: WBGene00000472, cey-1, C. Elegans Y-box, [RH, Score=129, Expect=2e-37]} {Smed: dd_Smed_v6_25570_0_1, dd_Smed_v6_25570_0_1, [RH, Score=166, Expect=4e-50]} {RNA1509_908} {RNA1310_37465} {RNA815_1641.1} Mlig455_004710 {REF} {Length: 2129} {Pfam: 'Cold-shock' DNA-binding domain [PF00313.24, score=92.6]; Ribonuclease B OB domain [PF08206.13, score=21.8]} {Human: ENSG00000065978, YBX1, Y-box binding protein 1, [RH, Score=161, Expect=4e-48]; ENSG00000060138, YBX3, Y-box binding protein 3, [RH, Score=160, Expect=7e-48]; ENSG00000006047, YBX2, Y-box binding protein 2, [RH, Score=158, Expect=2e-46]} {Mouse: ENSMUSG00000030189, Ybx3, Y box protein 3, [RH, Score=162, Expect=5e-48]; ENSMUSG00000028639, Ybx1, Y box protein 1, [RH, Score=161, Expect=2e-48]; ENSMUSG00000018554, Ybx2, Y box protein 2, [RH, Score=157, Expect=4e-46]} {Dmel: FBgn0022959, yps, ypsilon schachtel, [Score=150, Expect=7e-44]} {Celegans: WBGene00000472, cey-1, C. Elegans Y-box, [RH, Score=149, Expect=6e-45]} {Smed: dd_Smed_v6_25570_0_1, dd_Smed_v6_25570_0_1, [RH, Score=171, Expect=8e-52]} {RNA1509_908} {RNA1310_37465} {RNA815_1641.1}

Nr.

Cluster

Total UMI counts

Global CPM

Transcripts

Categories

Human homolog

Σ Spearman correlations

Int1

Int2

Int3

Reg1

Reg2

Reg3

Annotation

MligTC455_50227

7043

146.73

Mlig455_064783

Neo: -

Age: -

YBX1

1.000

MligTC455_50226

13148

273.92

Mlig455_004607, Mlig455_004710

Neo: -

Age: -

YBX1

5.896

0.981

0.960

0.999

0.989

0.993

0.974

Mlig455_004607 {REF} {Length: 2081} {Pfam: 'Cold-shock' DNA-binding domain [PF00313.24, score=92.6]; Ribonuclease B OB domain [PF08206.13, score=21.8]} {Human: ENSG00000065978, YBX1, Y-box binding protein 1, [RH, Score=161, Expect=4e-48]; ENSG00000060138, YBX3, Y-box binding protein 3, [RH, Score=160, Expect=6e-48]; ENSG00000006047, YBX2, Y-box binding protein 2, [RH, Score=158, Expect=2e-46]} {Mouse: ENSMUSG00000030189, Ybx3, Y box protein 3, [RH, Score=162, Expect=9e-49]; ENSMUSG00000028639, Ybx1, Y box protein 1, [RH, Score=161, Expect=3e-48]; ENSMUSG00000018554, Ybx2, Y box protein 2, [RH, Score=157, Expect=4e-46]} {Dmel: FBgn0022959, yps, ypsilon schachtel, [Score=150, Expect=7e-44]} {Celegans: WBGene00000472, cey-1, C. Elegans Y-box, [RH, Score=129, Expect=2e-37]} {Smed: dd_Smed_v6_25570_0_1, dd_Smed_v6_25570_0_1, [RH, Score=166, Expect=4e-50]} {RNA1509_908} {RNA1310_37465} {RNA815_1641.1}

Mlig455_004710 {REF} {Length: 2129} {Pfam: 'Cold-shock' DNA-binding domain [PF00313.24, score=92.6]; Ribonuclease B OB domain [PF08206.13, score=21.8]} {Human: ENSG00000065978, YBX1, Y-box binding protein 1, [RH, Score=161, Expect=4e-48]; ENSG00000060138, YBX3, Y-box binding protein 3, [RH, Score=160, Expect=7e-48]; ENSG00000006047, YBX2, Y-box binding protein 2, [RH, Score=158, Expect=2e-46]} {Mouse: ENSMUSG00000030189, Ybx3, Y box protein 3, [RH, Score=162, Expect=5e-48]; ENSMUSG00000028639, Ybx1, Y box protein 1, [RH, Score=161, Expect=2e-48]; ENSMUSG00000018554, Ybx2, Y box protein 2, [RH, Score=157, Expect=4e-46]} {Dmel: FBgn0022959, yps, ypsilon schachtel, [Score=150, Expect=7e-44]} {Celegans: WBGene00000472, cey-1, C. Elegans Y-box, [RH, Score=149, Expect=6e-45]} {Smed: dd_Smed_v6_25570_0_1, dd_Smed_v6_25570_0_1, [RH, Score=171, Expect=8e-52]} {RNA1509_908} {RNA1310_37465} {RNA815_1641.1}