M. lignano Tomo-Seq
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Results for MligTC455_50272

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_50272 620 12.92 Mlig455_043896

Neo: -

Age: Up-Down-Down

 VPS13D Mlig455_043896 {REF} {Length: 15254} {TRANSSPLICED} {Pfam: Vacuolar sorting-associated protein 13, N-terminal [PF16908.7, score=199.2]; SHR-binding domain of vacuolar-sorting associated protein 13 [PF06650.14, score=157.8]; Repeating coiled region of VPS13 [PF16910.7, score=108.1]; N-terminal region of Chorein or VPS13 [PF12624.9, score=106.3]; Vacuolar-sorting-associated 13 protein C-terminal [PF16909.7, score=87.0]} {Human: ENSG00000048707, VPS13D, vacuolar protein sorting 13 homolog D, [RH, Score=1680, Expect=0.0]} {Mouse: ENSMUSG00000020220, Vps13d, vacuolar protein sorting 13D, [RH, Score=1061, Expect=0.0]} {Dmel: FBgn0052113, CG32113, [RH, Score=817, Expect=0.0]} {Celegans: WBGene00016117, C25H3.8, [RH, Score=396, Expect=4e-110]} {Smed: dd_Smed_v6_6654_0_1, dd_Smed_v6_6654_0_1, [RH, Score=989, Expect=0.0]} {RNA1509_2438, RNA1509_36126} {RNA1310_73.1, RNA1509_36126} {RNA1509_36126, RNA815_3351}

Cumulative graph for MligTC455_50272

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -0.358 4.025 0.69356 1.00000
RegionR2 0.834 4.025 0.04941 0.26503
RegionR3 0.212 4.025 0.53133 1.00000
RegionR4 -0.205 4.025 0.59954 0.91295
RegionR5 0.045 4.025 0.88061 1.00000
RegionR6 -0.165 4.025 0.64680 1.00000
RegionR7 -0.713 4.025 0.15124 0.72123
RegionR8 0.35 4.025 0.49016 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -6.718 4.025 0.10106 0.81835
RegenerationR2 -0.311 4.025 0.37660 0.79963
RegenerationR3 0.318 4.025 0.42637 0.81912
RegenerationR4 0.406 4.025 0.31456 0.75373
RegenerationR5 0.291 4.025 0.42915 0.81735
RegenerationR6 0.724 4.025 0.08559 0.36621
RegenerationBL -0.388 4.025 0.51356 0.87689
RegenerationTP -0.163 4.025 0.77961 1.00000


Genes with expression patterns similar to MligTC455_50272

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_50272 620 12.92 Mlig455_043896

Neo: -

Age: Up-Down-Down

 VPS13D 6 1.000 1.000 1.000 1.000 1.000 1.000 Mlig455_043896 {REF} {Length: 15254} {TRANSSPLICED} {Pfam: Vacuolar sorting-associated protein 13, N-terminal [PF16908.7, score=199.2]; SHR-binding domain of vacuolar-sorting associated protein 13 [PF06650.14, score=157.8]; Repeating coiled region of VPS13 [PF16910.7, score=108.1]; N-terminal region of Chorein or VPS13 [PF12624.9, score=106.3]; Vacuolar-sorting-associated 13 protein C-terminal [PF16909.7, score=87.0]} {Human: ENSG00000048707, VPS13D, vacuolar protein sorting 13 homolog D, [RH, Score=1680, Expect=0.0]} {Mouse: ENSMUSG00000020220, Vps13d, vacuolar protein sorting 13D, [RH, Score=1061, Expect=0.0]} {Dmel: FBgn0052113, CG32113, [RH, Score=817, Expect=0.0]} {Celegans: WBGene00016117, C25H3.8, [RH, Score=396, Expect=4e-110]} {Smed: dd_Smed_v6_6654_0_1, dd_Smed_v6_6654_0_1, [RH, Score=989, Expect=0.0]} {RNA1509_2438, RNA1509_36126} {RNA1310_73.1, RNA1509_36126} {RNA1509_36126, RNA815_3351}
2. MligTC455_47047 312 6.5 Mlig455_027313

Neo: -

Age: -

Region-enriched R5: 2.586/0.00351

 ZNF311 0.97 - - - 0.970 - - Mlig455_027313 {REF} {Length: 2386} {TRANSSPLICED} {Pfam: C2H2-type zinc finger [PF13894.8, score=58.7]; Zinc finger, C2H2 type [PF00096.28, score=57.8]; Zinc-finger double domain [PF13465.8, score=37.0]; C2H2-type zinc finger [PF13912.8, score=19.2]} {Human: ENSG00000233831, ZNF311, zinc finger protein 311, [Score=129, Expect=1e-30]; ENSG00000169260, ZNF311, zinc finger protein 311, [Score=129, Expect=1e-30]; ENSG00000197935, ZNF311, zinc finger protein 311, [Score=129, Expect=1e-30]; ENSG00000235178, ZNF311, zinc finger protein 311, [Score=129, Expect=1e-30]; ENSG00000225351, ZNF311, zinc finger protein 311, [Score=129, Expect=1e-30]; ENSG00000235589, ZNF311, zinc finger protein 311, [Score=129, Expect=1e-30]; ENSG00000223687, ZNF311, zinc finger protein 311, [Score=129, Expect=1e-30]} {Mouse: ENSMUSG00000027439, Gzf1, GDNF-inducible zinc finger protein 1, [Score=124, Expect=2e-29]; ENSMUSG00000023902, Zscan10, zinc finger and SCAN domain containing 10, [Score=123, Expect=6e-29]; ENSMUSG00000091764, Zfp964, zinc finger protein 964, [Score=119, Expect=4e-28]; ENSMUSG00000057093, Zfp607b, zinc finger protein 607B, [Score=118, Expect=2e-27]} {Dmel: FBgn0000289, cg, combgap, [Score=99.8, Expect=1e-21]} {Celegans: WBGene00001324, eor-1, EOR-1, [Score=74.7, Expect=1e-13]} {Smed: dd_Smed_v6_14824_0_1, dd_Smed_v6_14824_0_1, [Score=86.3, Expect=4e-18]} {RNA1509_17053} {RNA1310_6919.1} {RNA815_1061.1}

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