M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_50278

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_50278 8 0.17 Mlig455_013409

Neo: -

Age: -

 Mlig455_013409 {REF} {Length: 4032} {RNA1310_121810}

Cumulative graph for MligTC455_50278

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 - - - -
RegionR2 - - - -
RegionR3 - - - -
RegionR4 - - - -
RegionR5 - - - -
RegionR6 - - - -
RegionR7 - - - -
RegionR8 - - - -

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 - - - -
RegenerationR2 - - - -
RegenerationR3 - - - -
RegenerationR4 - - - -
RegenerationR5 - - - -
RegenerationR6 - - - -
RegenerationBL - - - -
RegenerationTP - - - -


Genes with expression patterns similar to MligTC455_50278

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_50278 8 0.17 Mlig455_013409

Neo: -

Age: -

 1 - - - 1.000 - - Mlig455_013409 {REF} {Length: 4032} {RNA1310_121810}
2. MligTC455_50279 4 0.07 Mlig455_013451

Neo: -

Age: -

 1 - - - 1.000 - - Mlig455_013451 {REF} {Length: 997} {Pfam: Scramblase [PF03803.17, score=19.9]}
3. MligTC455_24205 31 0.65 Mlig455_024806, Mlig455_024883

Neo: -

Age: Up-Down-Down, logFC(26M/2M)=-0.560

 0.995 - - - 0.995 - -

Mlig455_024806 {REF} {Length: 3383} {RNA1509_710} {RNA1310_16.1} {RNA815_8}

Mlig455_024883 {REF} {Length: 16745} {RNA1509_27819, RNA1509_710} {RNA1310_16.1, RNA1509_27819} {RNA1509_27819, RNA815_8}
4. MligTC455_43434 12 0.25 Mlig455_049038

Neo: -

Age: -

 0.993 - - - 0.993 - - Mlig455_049038 {REF} {Length: 3155} {Pfam: Peptidase family M13 [PF05649.15, score=24.5]}
5. MligTC455_49123 58 1.21 Mlig455_057651

Neo: -

Age: -

 ASIC1 0.983 - - - 0.983 - - Mlig455_057651 {REF} {Length: 2608} {Pfam: Amiloride-sensitive sodium channel [PF00858.26, score=188.4]} {Human: ENSG00000110881, ASIC1, acid sensing ion channel subunit 1, [Score=71.2, Expect=3e-12]} {Mouse: ENSMUSG00000023017, Asic1, acid-sensing (proton-gated) ion channel 1, [Score=67.0, Expect=4e-11]} {Celegans: WBGene00012116, del-4, DEgenerin Like, [Score=89.0, Expect=3e-18]} {Smed: dd_Smed_v6_21491_0_1, dd_Smed_v6_21491_0_1, [Score=65.9, Expect=4e-11]} {RNA1310_10141} {RNA815_10820}
6. MligTC455_11865 160 3.33 Mlig455_037642, Mlig455_069907

Neo: -

Age: Up-Down-Down, logFC(26M/2M)=-1.621

 0.975 - - - 0.975 - -

Mlig455_037642 {REF} {Length: 3499} {Pfam: Glycine rich protein [PF12810.9, score=31.7]} {Smed: dd_Smed_v6_12148_0_3, dd_Smed_v6_12148_0_3, [Score=67.4, Expect=2e-12]} {RNA1310_19265.2} {RNA815_13143}

Mlig455_069907 {REF} {Length: 4084} {RNA1310_19265.2} {RNA815_13143}
7. MligTC455_09748 23 0.48 Mlig455_021244

Neo: -

Age: -

 0.966 - - - 0.966 - - Mlig455_021244 {REF} {Length: 1248} {RNA1310_73799} {RNA815_52728}
8. MligTC455_22130 92 1.92 Mlig455_015416

Neo: -

Age: Up-Down-Up

 FAP 0.956 - - - 0.956 - - Mlig455_015416 {REF} {Length: 4143} {Pfam: Dipeptidyl peptidase IV (DPP IV) N-terminal region [PF00930.23, score=174.7]; Prolyl oligopeptidase family [PF00326.23, score=104.4]; Dienelactone hydrolase family [PF01738.20, score=18.2]} {Human: ENSG00000078098, FAP, fibroblast activation protein alpha, [Score=253, Expect=5e-72]; ENSG00000130226, DPP6, dipeptidyl peptidase like 6, [Score=243, Expect=3e-68]; ENSG00000282974, DPP6, dipeptidyl peptidase like 6, [Score=243, Expect=3e-68]} {Mouse: ENSMUSG00000000392, Fap, fibroblast activation protein, [Score=248, Expect=2e-70]; ENSMUSG00000061576, Dpp6, dipeptidylpeptidase 6, [Score=239, Expect=5e-67]} {Dmel: FBgn0259175, ome, omega, [Score=235, Expect=1e-65]} {Celegans: WBGene00001054, dpf-1, Dipeptidyl peptidase family member 1, [Score=173, Expect=1e-44]} {Smed: dd_Smed_v6_9183_0_1, dd_Smed_v6_9183_0_1, [Score=310, Expect=8e-93]} {RNA1509_24010} {RNA1310_4341.2} {RNA815_2498}
9. MligTC455_29262 96 2 Mlig455_038249

Neo: -

Age: Up-Down-Down, logFC(26M/2M)=0.738

 0.954 - - - 0.954 - - Mlig455_038249 {REF} {Length: 8932} {RNA1509_25125, RNA1509_25587, RNA1509_9188} {RNA1310_234.1, RNA1509_25125, RNA1509_25587} {RNA1509_25125, RNA1509_25587, RNA815_23.1}
10. MligTC455_25794 22 0.47 Mlig455_007596

Neo: -

Age: -

 0.951 - - - 0.951 - - Mlig455_007596 {REF} {Length: 1286} {Smed: dd_Smed_v6_91651_0_1, dd_Smed_v6_91651_0_1, [RH, Score=54.7, Expect=7e-10]} {RNA1509_46103} {RNA1310_6410.1} {RNA815_31889}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA