M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_50302

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_50302 41 0.85 Mlig455_046387

Neo: -

Age: -

 Mlig455_046387 {REF} {Length: 828} {NoTransDecoderORF} {RNA1509_51606} {RNA1310_24468.1} {RNA815_39459}

Cumulative graph for MligTC455_50302

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -2.013 1.254 1.00000 1.00000
RegionR2 1.504 1.254 0.28034 0.66702
RegionR3 -1.027 1.254 0.94925 1.00000
RegionR4 1.563 1.254 0.27036 0.57570
RegionR5 0.238 1.254 0.70242 1.00000
RegionR6 0.398 1.254 0.66422 1.00000
RegionR7 2.397 1.254 0.11477 0.64195
RegionR8 -3.06 1.254 1.00000 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -0.258 1.254 0.99999 1.00000
RegenerationR2 0.424 1.254 0.59920 0.91540
RegenerationR3 1.415 1.254 0.29243 0.72464
RegenerationR4 0.368 1.254 0.73678 0.96672
RegenerationR5 0.949 1.254 0.33249 0.75323
RegenerationR6 0.057 1.254 0.96431 1.00000
RegenerationBL 1.006 1.254 0.57604 0.92913
RegenerationTP 2.501 1.254 0.23688 0.68263


Genes with expression patterns similar to MligTC455_50302

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_50302 41 0.85 Mlig455_046387

Neo: -

Age: -

 4 - 1.000 - 1.000 1.000 1.000 Mlig455_046387 {REF} {Length: 828} {NoTransDecoderORF} {RNA1509_51606} {RNA1310_24468.1} {RNA815_39459}
2. MligTC455_38187 373 7.76 Mlig455_014893, Mlig455_014894, Mlig455_015018, Mlig455_038636

Neo: -

Age: -

 KCNQ4, KCNQ5 1.715 - - - - 0.756 0.959

Mlig455_014893 {REF} {Length: 2201} {RNA1509_14697} {RNA1310_35101} {RNA815_16213}

Mlig455_014894 {REF} {Length: 2033} {Pfam: Ion transport protein [PF00520.33, score=97.0]; Ion channel [PF07885.18, score=51.5]} {Human: ENSG00000185760, KCNQ5, potassium voltage-gated channel subfamily Q member 5, [Score=360, Expect=7e-112]} {Mouse: ENSMUSG00000028033, Kcnq5, potassium voltage-gated channel, subfamily Q, member 5, [Score=359, Expect=1e-111]} {Dmel: FBgn0033494, KCNQ, KCNQ potassium channel, [Score=419, Expect=1e-137]} {Celegans: WBGene00002233, kqt-1, KQT-1 potassium channel; Potassium channel, KvQLT family, [Score=408, Expect=3e-133]} {Smed: dd_Smed_v6_12681_0_1, dd_Smed_v6_12681_0_1, [Score=494, Expect=3e-165]} {RNA1509_14697} {RNA1310_2072.1} {RNA815_522}

Mlig455_015018 {REF} {Length: 3026} {Pfam: Ion transport protein [PF00520.33, score=102.9]; KCNQ voltage-gated potassium channel [PF03520.16, score=97.5]; Ion channel [PF07885.18, score=50.7]} {Human: ENSG00000117013, KCNQ4, potassium voltage-gated channel subfamily Q member 4, [RH, Score=438, Expect=6e-140]} {Mouse: ENSMUSG00000028631, Kcnq4, potassium voltage-gated channel, subfamily Q, member 4, [RH, Score=431, Expect=1e-137]} {Dmel: FBgn0033494, KCNQ, KCNQ potassium channel, [RH, Score=452, Expect=5e-142]} {Celegans: WBGene00002233, kqt-1, KQT-1 potassium channel; Potassium channel, KvQLT family, [Score=439, Expect=1e-140]} {Smed: dd_Smed_v6_12681_0_1, dd_Smed_v6_12681_0_1, [RH, Score=529, Expect=7e-174]} {RNA1509_53461} {RNA1310_5448} {RNA815_4132}

Mlig455_038636 {REF} {Length: 5388} {TRANSSPLICED} {Pfam: KCNQ voltage-gated potassium channel [PF03520.16, score=122.0]; Ion transport protein [PF00520.33, score=102.5]; Ion channel [PF07885.18, score=50.3]} {Human: ENSG00000117013, KCNQ4, potassium voltage-gated channel subfamily Q member 4, [RH, Score=456, Expect=9e-145]} {Mouse: ENSMUSG00000028631, Kcnq4, potassium voltage-gated channel, subfamily Q, member 4, [RH, Score=449, Expect=4e-142]} {Dmel: FBgn0033494, KCNQ, KCNQ potassium channel, [RH, Score=462, Expect=1e-143]} {Celegans: WBGene00002233, kqt-1, KQT-1 potassium channel; Potassium channel, KvQLT family, [Score=442, Expect=5e-140]} {Smed: dd_Smed_v6_12681_0_1, dd_Smed_v6_12681_0_1, [Score=537, Expect=2e-174]} {RNA1509_53461} {RNA1310_2072.1} {RNA815_4132}
3. MligTC455_30918 124 2.58 Mlig455_027723, Mlig455_027930

Neo: -

Age: Down-Up-Down, logFC(26M/2M)=-0.367

 ANGPTL1, STK36 0.972 - - - - - 0.972

Mlig455_027723 {REF} {Length: 2139} {Pfam: Fibrinogen beta and gamma chains, C-terminal globular domain [PF00147.20, score=79.3]} {Human: ENSG00000116194, ANGPTL1, angiopoietin like 1, [Score=67.0, Expect=2e-11]; ENSG00000132855, ANGPTL3, angiopoietin like 3, [Score=64.7, Expect=9e-11]; ENSG00000120332, TNN, tenascin N, [Score=64.3, Expect=2e-10]} {Mouse: ENSMUSG00000033327, Tnxb, tenascin XB, [Score=66.6, Expect=3e-11]} {Dmel: FBgn0031804, CG9500, [Score=80.5, Expect=1e-16]} {Smed: dd_Smed_v6_18326_0_1, dd_Smed_v6_18326_0_1, [Score=61.6, Expect=3e-10]} {RNA1509_53291} {RNA1310_21728} {RNA815_9881}

Mlig455_027930 {REF} {Length: 3679} {Pfam: Protein kinase domain [PF00069.27, score=93.2]; Fibrinogen beta and gamma chains, C-terminal globular domain [PF00147.20, score=76.4]; Protein tyrosine and serine/threonine kinase [PF07714.19, score=72.3]; Ankyrin repeats (3 copies) [PF12796.9, score=68.1]; Ankyrin repeat [PF13606.8, score=42.1]; Ankyrin repeats (many copies) [PF13637.8, score=39.6]; Ankyrin repeats (many copies) [PF13857.8, score=39.3]; Ankyrin repeat [PF00023.32, score=32.9]; ABC1 atypical kinase-like domain [PF03109.18, score=20.3]} {Human: ENSG00000163482, STK36, serine/threonine kinase 36, [Score=71.2, Expect=8e-12]; ENSG00000085511, MAP3K4, mitogen-activated protein kinase kinase kinase 4, [Score=70.9, Expect=1e-11]; ENSG00000126562, WNK4, WNK lysine deficient protein kinase 4, [Score=70.5, Expect=7e-12]; ENSG00000180815, MAP3K15, mitogen-activated protein kinase kinase kinase 15, [Score=68.9, Expect=4e-11]} {Mouse: ENSMUSG00000025758, Plk4, polo like kinase 4, [Score=72.0, Expect=2e-12]; ENSMUSG00000116326, Plk4, polo like kinase 4, [Score=72.0, Expect=2e-12]; ENSMUSG00000035112, Wnk4, WNK lysine deficient protein kinase 4, [Score=70.5, Expect=8e-12]; ENSMUSG00000014426, Map3k4, mitogen-activated protein kinase kinase kinase 4, [Score=70.1, Expect=1e-11]} {Dmel: FBgn0031804, CG9500, [Score=81.3, Expect=2e-16]} {Celegans: WBGene00003472, mtk-1, MTK1/MEKK4 homolog, [Score=77.0, Expect=5e-14]} {Smed: dd_Smed_v6_5138_0_2, dd_Smed_v6_5138_0_2, [Score=77.8, Expect=2e-14]} {RNA1509_26758} {RNA1310_21728} {RNA815_9881}
4. MligTC455_43984 91 1.9 Mlig455_041471

Neo: -

Age: -

 ENTPD5 0.963 - - - - - 0.963 Mlig455_041471 {REF} {Length: 3234} {Pfam: GDA1/CD39 (nucleoside phosphatase) family [PF01150.19, score=158.7]} {Human: ENSG00000187097, ENTPD5, ectonucleoside triphosphate diphosphohydrolase 5, [Score=129, Expect=3e-32]} {Mouse: ENSMUSG00000021236, Entpd5, ectonucleoside triphosphate diphosphohydrolase 5, [Score=123, Expect=5e-30]; ENSMUSG00000033068, Entpd6, ectonucleoside triphosphate diphosphohydrolase 6, [Score=122, Expect=1e-29]} {Dmel: FBgn0024947, NTPase, [Score=120, Expect=5e-29]} {Celegans: WBGene00016380, ntp-1, Nucleoside-triphosphatase ntp-1, [Score=106, Expect=3e-24]} {Smed: dd_Smed_v6_8855_0_2, dd_Smed_v6_8855_0_2, [Score=117, Expect=3e-28]} {RNA1509_36246} {RNA1310_11342} {RNA815_29784}
5. MligTC455_32023 58 1.21 Mlig455_042769

Neo: -

Age: Up-Down-Up

 0.961 - - - - - 0.961 Mlig455_042769 {REF} {Length: 5869} {RNA1509_22651} {RNA1310_622.1} {RNA815_2514.1}
6. MligTC455_53382 110 2.28 Mlig455_006777

Neo: -

Age: -

 0.959 - - - - - 0.959 Mlig455_006777 {REF} {Length: 2841} {Pfam: 7 transmembrane receptor (rhodopsin family) [PF00001.23, score=54.8]} {Dmel: FBgn0039747, AdoR, Adenosine receptor, [Score=48.9, Expect=1e-05]} {Smed: dd_Smed_v6_8885_0_1, dd_Smed_v6_8885_0_1, [Score=137, Expect=6e-36]} {RNA1509_47534} {RNA1310_15311} {RNA815_12841}
7. MligTC455_45682 167 3.49 Mlig455_065509

Neo: -

Age: -

 0.955 - - - - 0.955 - Mlig455_065509 {REF} {Length: 811} {Pfam: Late nodulin protein [PF07127.13, score=20.4]} {RNA1310_45419} {RNA815_22274}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA