TomoSeq data search

Data search

Results for MligTC455_50330

Cluster

Total UMI counts

Global CPM

Transcripts

Categories

Human homolog

Annotation

MligTC455_50330

530

11.04

Mlig455_035343, Mlig455_035387

Neo: -

Age: Down-Up-Down, logFC(26M/2M)=-0.611

Mlig455_035343 {REF} {Length: 1298} {RNA1509_20166} {RNA1310_13403.1, RNA1509_20166} {RNA1509_20166, RNA815_4410.1}

Mlig455_035387 {REF} {Length: 1136} {RNA1509_20166} {RNA1310_12389} {RNA815_4410.1}

Cumulative graph for MligTC455_50330

Region-enriched expression

Region	logFC	logCPM	Pvalue	FDR	Specificity
RegionR1	-7.105	3.838	0.03350	0.46108
RegionR2	-0.032	3.838	0.85978	1.00000
RegionR3	1.444	3.838	0.02535	0.27200
RegionR4	1.549	3.838	0.03561	0.15325
RegionR5	0.294	3.838	0.70308	1.00000
RegionR6	1.658	3.838	0.00764	0.14231
RegionR7	0.644	3.838	0.48439	1.00000
RegionR8	1.548	3.838	0.05195	0.44449

Regeneration-enriched expression

Region	logFC	logCPM	PValue	FDR	Specificity
RegenerationR1	0.141	3.838	0.99998	1.00000
RegenerationR2	0.107	3.838	0.82348	0.99583
RegenerationR3	-0.544	3.838	0.25902	0.69325
RegenerationR4	-0.717	3.838	0.15545	0.58610
RegenerationR5	0.118	3.838	0.81083	0.99178
RegenerationR6	-0.567	3.838	0.23562	0.58325
RegenerationBL	-0.51	3.838	0.35687	0.72547
RegenerationTP	-0.76	3.838	0.22769	0.67289

Genes with expression patterns similar to MligTC455_50330

Nr.	Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Σ Spearman correlations	Int1	Int2	Int3	Reg1	Reg2	Reg3	Annotation
1.	MligTC455_50330	530	11.04	Mlig455_035343, Mlig455_035387	Neo: - Age: Down-Up-Down, logFC(26M/2M)=-0.611		6	1.000	1.000	1.000	1.000	1.000	1.000	Mlig455_035343 {REF} {Length: 1298} {RNA1509_20166} {RNA1310_13403.1, RNA1509_20166} {RNA1509_20166, RNA815_4410.1} Mlig455_035387 {REF} {Length: 1136} {RNA1509_20166} {RNA1310_12389} {RNA815_4410.1}
2.	MligTC455_40832	415	8.65	Mlig455_000165	Neo: - Age: Down-Down-Up, logFC(26M/2M)=-1.090		0.956	-	0.956	-	-	-	-	Mlig455_000165 {REF} {Length: 2311} {Smed: dd_Smed_v6_10173_0_1, dd_Smed_v6_10173_0_1, [Score=50.4, Expect=2e-07]} {RNA1509_21542} {RNA1310_31158} {RNA815_28463}
3.	MligTC455_24450	277	5.77	Mlig455_034611	Neo: - Age: -		0.952	-	-	-	-	-	0.952	Mlig455_034611 {REF} {Length: 1827} {RNA1509_35741} {RNA1310_52741, RNA1509_35741} {RNA1509_35741, RNA815_31821}
4.	MligTC455_41491	557	11.61	Mlig455_036311	Neo: - Age: Down-Up-Down	TMEM30B	0.952	-	0.952	-	-	-	-	Mlig455_036311 {REF} {Length: 2411} {TRANSSPLICED} {Pfam: LEM3 (ligand-effect modulator 3) family / CDC50 family [PF03381.17, score=105.1]} {Human: ENSG00000182107, TMEM30B, transmembrane protein 30B, [Score=88.6, Expect=3e-21]; ENSG00000112697, TMEM30A, transmembrane protein 30A, [Score=86.3, Expect=2e-20]} {Mouse: ENSMUSG00000032328, Tmem30a, transmembrane protein 30A, [Score=90.5, Expect=5e-22]} {Dmel: FBgn0030752, CG9947, [Score=93.2, Expect=3e-23]} {Celegans: WBGene00019946, chat-1, CDC50 family protein chat-1, [Score=80.9, Expect=9e-19]} {Smed: dd_Smed_v6_6430_0_3, dd_Smed_v6_6430_0_3, [Score=97.1, Expect=4e-25]} {RNA1509_17710, RNA1509_3812} {RNA1310_18859, RNA1509_17710, RNA1509_3812} {RNA1509_17710, RNA1509_3812, RNA815_8438}
5.	MligTC455_20504	99	2.06	Mlig455_057197	Neo: - Age: Up-Down-Down, logFC(26M/2M)=-0.617	BEST3	0.95	-	0.950	-	-	-	-	Mlig455_057197 {REF} {Length: 4679} {Pfam: Bestrophin, RFP-TM, chloride channel [PF01062.23, score=176.4]} {Human: ENSG00000127325, BEST3, bestrophin 3, [Score=166, Expect=2e-43]; ENSG00000142959, BEST4, bestrophin 4, [Score=161, Expect=5e-43]} {Mouse: ENSMUSG00000020169, Best3, bestrophin 3, [Score=163, Expect=1e-42]} {Dmel: FBgn0040238, Best1, Bestrophin 1, [Score=193, Expect=4e-53]} {Celegans: WBGene00015288, best-4, Bestrophin homolog, [Score=157, Expect=3e-41]} {Smed: dd_Smed_v6_1844_0_1, dd_Smed_v6_1844_0_1, [RH, Score=288, Expect=4e-92]} {RNA1509_58827} {RNA1310_25449} {RNA815_7550}

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