M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_50358

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_50358 58 1.21 Mlig455_063419

Neo: -

Age: -

 Mlig455_063419 {REF} {Length: 1637} {Mouse: ENSMUSG00000024246, Thumpd2, THUMP domain containing 2, [Score=51.2, Expect=5e-07]} {Celegans: WBGene00018026, F35A5.4, [Score=47.0, Expect=7e-06]} {RNA1509_46395} {RNA1310_61857} {RNA815_29752}

Cumulative graph for MligTC455_50358

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -1.908 1.488 1.00000 1.00000
RegionR2 0.093 1.488 0.68450 1.00000
RegionR3 1.406 1.488 0.30969 0.84887
RegionR4 2.57 1.488 0.07038 0.24299
RegionR5 0.92 1.488 0.45801 0.82033
RegionR6 0.996 1.488 0.43367 0.99570
RegionR7 -2.412 1.488 0.99976 1.00000
RegionR8 -1.665 1.488 0.99979 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 3.936 1.488 0.50753 1.00000
RegenerationR2 1.436 1.488 0.11966 0.53800
RegenerationR3 0.81 1.488 0.45234 0.83282
RegenerationR4 0.345 1.488 0.75630 0.97134
RegenerationR5 0.859 1.488 0.39508 0.79493
RegenerationR6 0.614 1.488 0.60187 0.86961
RegenerationBL 0.509 1.488 0.63752 0.97672
RegenerationTP 3.021 1.488 0.25426 0.70190


Genes with expression patterns similar to MligTC455_50358

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_50358 58 1.21 Mlig455_063419

Neo: -

Age: -

 3 - - - 1.000 1.000 1.000 Mlig455_063419 {REF} {Length: 1637} {Mouse: ENSMUSG00000024246, Thumpd2, THUMP domain containing 2, [Score=51.2, Expect=5e-07]} {Celegans: WBGene00018026, F35A5.4, [Score=47.0, Expect=7e-06]} {RNA1509_46395} {RNA1310_61857} {RNA815_29752}
2. MligTC455_28780 110 2.3 Mlig455_054223

Neo: -

Age: Up-Down-Up

 TANC2 0.984 - - - - - 0.984 Mlig455_054223 {REF} {Length: 4977} {Pfam: Ankyrin repeats (many copies) [PF13637.8, score=48.3]; Mab-21 protein [PF03281.16, score=44.1]; Ankyrin repeats (3 copies) [PF12796.9, score=42.1]; Ankyrin repeats (many copies) [PF13857.8, score=37.1]; Ankyrin repeat [PF13606.8, score=34.3]; Ankyrin repeat [PF00023.32, score=33.2]} {Human: ENSG00000170921, TANC2, tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2, [Score=68.6, Expect=6e-11]} {Mouse: ENSMUSG00000053580, Tanc2, tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2, [Score=68.6, Expect=4e-11]} {Dmel: FBgn0041096, rols, rolling pebbles, [Score=68.6, Expect=2e-11]} {Celegans: WBGene00011240, R11A8.7, Ankyrin repeat and KH domain-containing protein R11A8.7, [Score=61.6, Expect=3e-09]} {Smed: dd_Smed_v6_6779_0_1, dd_Smed_v6_6779_0_1, [Score=57.8, Expect=3e-08]} {RNA1509_27730} {RNA1310_4721} {RNA815_5358.1}
3. MligTC455_41064 186 3.88 Mlig455_016243

Neo: -

Age: Up-Down-Up

 DHX34 0.979 - - - 0.979 - - Mlig455_016243 {REF} {Length: 5569} {TRANSSPLICED} {Pfam: Helicase conserved C-terminal domain [PF00271.33, score=47.9]; Helicase associated domain (HA2) [PF04408.25, score=44.5]; Oligonucleotide/oligosaccharide-binding (OB)-fold [PF07717.18, score=28.0]} {Human: ENSG00000134815, DHX34, DExH-box helicase 34, [Score=652, Expect=0.0]} {Mouse: ENSMUSG00000006019, Dhx34, DEAH (Asp-Glu-Ala-His) box polypeptide 34, [Score=649, Expect=0.0]} {Dmel: FBgn0052533, CG32533, [Score=571, Expect=0.0]} {Celegans: WBGene00021365, smgl-2, [RH, Score=488, Expect=2e-159]} {Smed: dd_Smed_v6_6138_0_1, dd_Smed_v6_6138_0_1, [Score=256, Expect=2e-74]} {RNA1509_20717} {RNA1310_3127.1} {RNA815_5472}
4. MligTC455_31394 265 5.52 Mlig455_015113

Neo: -

Age: -

 INPP5E 0.975 - - - - - 0.975 Mlig455_015113 {REF} {Length: 2990} {TRANSSPLICED} {Human: ENSG00000148384, INPP5E, inositol polyphosphate-5-phosphatase E, [RH, Score=298, Expect=3e-92]} {Mouse: ENSMUSG00000026925, Inpp5e, inositol polyphosphate-5-phosphatase E, [RH, Score=290, Expect=2e-89]} {Dmel: FBgn0036273, INPP5E, Inositol polyphosphate 5-phosphatase E, [RH, Score=296, Expect=9e-91]} {Celegans: WBGene00012016, inpp-1, INositol Polyphosphate-5-Phosphatase, [Score=125, Expect=3e-31]} {Smed: dd_Smed_v6_18478_0_1, dd_Smed_v6_18478_0_1, [RH, Score=204, Expect=6e-58]} {RNA1509_32616} {RNA1310_12840} {RNA815_7672}
5. MligTC455_52372 288 5.99 Mlig455_012761

Neo: -

Age: logFC(26M/2M)=-0.342

 CEP89 0.968 - - - - - 0.968 Mlig455_012761 {REF} {Length: 3139} {Pfam: Uncharacterised protein family (UPF0242) N-terminus [PF06785.13, score=23.6]} {Human: ENSG00000121289, CEP89, centrosomal protein 89, [RH, Score=113, Expect=1e-25]} {Mouse: ENSMUSG00000023072, Cep89, centrosomal protein 89, [RH, Score=106, Expect=2e-23]} {Smed: dd_Smed_v6_13073_0_1, dd_Smed_v6_13073_0_1, [RH, Score=80.5, Expect=1e-15]} {RNA1509_10380} {RNA1310_5262.1} {RNA815_3458.1}
6. MligTC455_50975 173 3.6 Mlig455_014388

Neo: -

Age: Down-Up-Up

 CHRNB3 0.966 - - - - - 0.966 Mlig455_014388 {REF} {Length: 1742} {Pfam: Neurotransmitter-gated ion-channel ligand binding domain [PF02931.25, score=101.6]; Neurotransmitter-gated ion-channel transmembrane region [PF02932.18, score=23.6]} {Human: ENSG00000147432, CHRNB3, cholinergic receptor nicotinic beta 3 subunit, [Score=110, Expect=4e-26]; ENSG00000120903, CHRNA2, cholinergic receptor nicotinic alpha 2 subunit, [Score=108, Expect=2e-25]; ENSG00000169684, CHRNA5, cholinergic receptor nicotinic alpha 5 subunit, [Score=107, Expect=5e-25]; ENSG00000274542, AC243734.1, cholinergic receptor nicotinic alpha 7 subunit, [Score=106, Expect=9e-25]; ENSG00000175344, CHRNA7, cholinergic receptor nicotinic alpha 7 subunit, [Score=106, Expect=7e-25]; ENSG00000282088, AC254952.1, cholinergic receptor nicotinic alpha 7 subunit, [Score=105, Expect=2e-24]} {Mouse: ENSMUSG00000031492, Chrnb3, cholinergic receptor, nicotinic, beta polypeptide 3, [Score=114, Expect=5e-28]} {Dmel: FBgn0000036, nAChRalpha1, nicotinic Acetylcholine Receptor alpha1, [Score=107, Expect=2e-25]} {Celegans: WBGene00000955, des-2, Acetylcholine receptor subunit alpha-type des-2, [Score=104, Expect=2e-24]} {Smed: dd_Smed_v6_26232_0_1, dd_Smed_v6_26232_0_1, [Score=157, Expect=2e-43]} {RNA1310_54548} {RNA815_33490}
7. MligTC455_18623 381 7.95 Mlig455_008343

Neo: -

Age: -

Region-enriched R2: 1.919/0.03070

 SPATS1 0.963 - - - - - 0.963 Mlig455_008343 {REF} {Length: 1483} {TRANSSPLICED} {Pfam: Spermatogenesis-associated serine-rich protein 1 [PF15160.8, score=71.5]} {Human: ENSG00000249481, SPATS1, spermatogenesis associated serine rich 1, [RH, Score=74.3, Expect=7e-15]} {Mouse: ENSMUSG00000023935, Spats1, spermatogenesis associated, serine-rich 1, [RH, Score=73.2, Expect=9e-15]} {Smed: dd_Smed_v6_8305_0_1, dd_Smed_v6_8305_0_1, [RH, Score=210, Expect=8e-68]} {RNA1509_15481} {RNA1310_26555, RNA1509_15481} {RNA1509_15481, RNA815_13979}
8. MligTC455_38600 71 1.49 Mlig455_028052

Neo: -

Age: -

 CCDC87 0.962 - - - - - 0.962 Mlig455_028052 {REF} {Length: 4672} {Pfam: Microtubule associated protein (MAP65/ASE1 family) [PF03999.14, score=22.6]} {Human: ENSG00000182791, CCDC87, coiled-coil domain containing 87, [RH, Score=116, Expect=8e-26]} {Mouse: ENSMUSG00000067872, Ccdc87, coiled-coil domain containing 87, [RH, Score=112, Expect=1e-24]} {Smed: dd_Smed_v6_12480_0_1, dd_Smed_v6_12480_0_1, [RH, Score=326, Expect=5e-96]} {RNA1509_8830} {RNA1310_2448.2, RNA1509_8830} {RNA1509_8830, RNA815_4309}
9. MligTC455_26004 161 3.34 Mlig455_005523, Mlig455_036228

Neo: -

Age: logFC(26M/2M)=0.483

Region-enriched R2: 3.880/0.02863

 0.95 - - - - - 0.950

Mlig455_005523 {REF} {Length: 3106} {RNA1509_54312} {RNA1310_125315} {RNA815_31978}

Mlig455_036228 {REF} {Length: 3817} {RNA1509_54312} {RNA1310_75243} {RNA815_31978}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA