TomoSeq data search

Data search

Results for MligTC455_50444

Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Annotation
MligTC455_50444	6877	143.27	Mlig455_038937	Neo: - Age: -	ARF1	Mlig455_038937 {REF} {Length: 1841} {TRANSSPLICED} {Pfam: ADP-ribosylation factor family [PF00025.23, score=263.5]; Signal recognition particle receptor beta subunit [PF09439.12, score=52.8]; Ras of Complex, Roc, domain of DAPkinase [PF08477.15, score=52.3]; Ras family [PF00071.24, score=46.9]; G-protein alpha subunit [PF00503.22, score=44.6]; Gtr1/RagA G protein conserved region [PF04670.14, score=36.9]; 50S ribosome-binding GTPase [PF01926.25, score=25.3]} {Human: ENSG00000143761, ARF1, ADP ribosylation factor 1, [RH, Score=343, Expect=4e-122]; ENSG00000134287, ARF3, ADP ribosylation factor 3, [RH, Score=336, Expect=2e-119]} {Mouse: ENSMUSG00000048076, Arf1, ADP-ribosylation factor 1, [RH, Score=343, Expect=3e-122]; ENSMUSG00000062421, Arf2, ADP-ribosylation factor 2, [RH, Score=338, Expect=2e-120]; ENSMUSG00000051853, Arf3, ADP-ribosylation factor 3, [RH, Score=336, Expect=1e-119]} {Dmel: FBgn0010348, Arf79F, ADP ribosylation factor at 79F, [RH, Score=347, Expect=3e-124]} {Celegans: WBGene00000182, arf-1.2, ADP-ribosylation factor 1-like 2, [RH, Score=347, Expect=5e-124]} {Smed: dd_Smed_v6_203_0_1, dd_Smed_v6_203_0_1, [RH, Score=344, Expect=3e-123]} {RNA1509_20177, RNA1509_26559, RNA1509_5167, RNA1509_859} {RNA1310_36598, RNA1509_20177, RNA1509_26559, RNA1509_5167} {RNA1509_20177, RNA1509_26559, RNA1509_5167, RNA815_11926}

Cluster

Total UMI counts

Global CPM

Transcripts

Categories

Human homolog

Annotation

MligTC455_50444

6877

143.27

Mlig455_038937

Neo: -

Age: -

ARF1

Mlig455_038937 {REF} {Length: 1841} {TRANSSPLICED} {Pfam: ADP-ribosylation factor family [PF00025.23, score=263.5]; Signal recognition particle receptor beta subunit [PF09439.12, score=52.8]; Ras of Complex, Roc, domain of DAPkinase [PF08477.15, score=52.3]; Ras family [PF00071.24, score=46.9]; G-protein alpha subunit [PF00503.22, score=44.6]; Gtr1/RagA G protein conserved region [PF04670.14, score=36.9]; 50S ribosome-binding GTPase [PF01926.25, score=25.3]} {Human: ENSG00000143761, ARF1, ADP ribosylation factor 1, [RH, Score=343, Expect=4e-122]; ENSG00000134287, ARF3, ADP ribosylation factor 3, [RH, Score=336, Expect=2e-119]} {Mouse: ENSMUSG00000048076, Arf1, ADP-ribosylation factor 1, [RH, Score=343, Expect=3e-122]; ENSMUSG00000062421, Arf2, ADP-ribosylation factor 2, [RH, Score=338, Expect=2e-120]; ENSMUSG00000051853, Arf3, ADP-ribosylation factor 3, [RH, Score=336, Expect=1e-119]} {Dmel: FBgn0010348, Arf79F, ADP ribosylation factor at 79F, [RH, Score=347, Expect=3e-124]} {Celegans: WBGene00000182, arf-1.2, ADP-ribosylation factor 1-like 2, [RH, Score=347, Expect=5e-124]} {Smed: dd_Smed_v6_203_0_1, dd_Smed_v6_203_0_1, [RH, Score=344, Expect=3e-123]} {RNA1509_20177, RNA1509_26559, RNA1509_5167, RNA1509_859} {RNA1310_36598, RNA1509_20177, RNA1509_26559, RNA1509_5167} {RNA1509_20177, RNA1509_26559, RNA1509_5167, RNA815_11926}

Cumulative graph for MligTC455_50444

Region-enriched expression

Region	logFC	logCPM	Pvalue	FDR
RegionR1	-2.791	7.211	0.00000	0.00026
RegionR2	0.119	7.211	0.64560	0.98226
RegionR3	0.355	7.211	0.10205	0.55964
RegionR4	0.64	7.211	0.00954	0.05895
RegionR5	0.729	7.211	0.00043	0.00522
RegionR6	0.814	7.211	0.00014	0.00994
RegionR7	0.263	7.211	0.26035	0.88763
RegionR8	-0.128	7.211	0.63555	1.00000

Regeneration-enriched expression

Region	logFC	logCPM	PValue	FDR
RegenerationR1	0.866	7.211	0.19434	0.93265
RegenerationR2	-0.438	7.211	0.09209	0.48439
RegenerationR3	-0.584	7.211	0.03003	0.31104
RegenerationR4	-0.61	7.211	0.02628	0.26041
RegenerationR5	-0.471	7.211	0.07141	0.41976
RegenerationR6	-0.867	7.211	0.00119	0.03808
RegenerationBL	-0.223	7.211	0.37096	0.73948
RegenerationTP	-0.136	7.211	0.60905	0.96616

Genes with expression patterns similar to MligTC455_50444

Nr.	Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Σ Spearman correlations	Int1	Int2	Int3	Reg1	Reg2	Reg3	Annotation
1.	MligTC455_50444	6877	143.27	Mlig455_038937	Neo: - Age: -	ARF1	6	1.000	1.000	1.000	1.000	1.000	1.000	Mlig455_038937 {REF} {Length: 1841} {TRANSSPLICED} {Pfam: ADP-ribosylation factor family [PF00025.23, score=263.5]; Signal recognition particle receptor beta subunit [PF09439.12, score=52.8]; Ras of Complex, Roc, domain of DAPkinase [PF08477.15, score=52.3]; Ras family [PF00071.24, score=46.9]; G-protein alpha subunit [PF00503.22, score=44.6]; Gtr1/RagA G protein conserved region [PF04670.14, score=36.9]; 50S ribosome-binding GTPase [PF01926.25, score=25.3]} {Human: ENSG00000143761, ARF1, ADP ribosylation factor 1, [RH, Score=343, Expect=4e-122]; ENSG00000134287, ARF3, ADP ribosylation factor 3, [RH, Score=336, Expect=2e-119]} {Mouse: ENSMUSG00000048076, Arf1, ADP-ribosylation factor 1, [RH, Score=343, Expect=3e-122]; ENSMUSG00000062421, Arf2, ADP-ribosylation factor 2, [RH, Score=338, Expect=2e-120]; ENSMUSG00000051853, Arf3, ADP-ribosylation factor 3, [RH, Score=336, Expect=1e-119]} {Dmel: FBgn0010348, Arf79F, ADP ribosylation factor at 79F, [RH, Score=347, Expect=3e-124]} {Celegans: WBGene00000182, arf-1.2, ADP-ribosylation factor 1-like 2, [RH, Score=347, Expect=5e-124]} {Smed: dd_Smed_v6_203_0_1, dd_Smed_v6_203_0_1, [RH, Score=344, Expect=3e-123]} {RNA1509_20177, RNA1509_26559, RNA1509_5167, RNA1509_859} {RNA1310_36598, RNA1509_20177, RNA1509_26559, RNA1509_5167} {RNA1509_20177, RNA1509_26559, RNA1509_5167, RNA815_11926}
2.	MligTC455_44554	2121	44.19	Mlig455_056025, Mlig455_057459	Neo: Irradiation Age: -	AC079594.2	1.769	-	-	0.795	0.974	-	-	Mlig455_056025 {REF} {Length: 3009} {tRNA: Val(CAC),pseudo, score=27.9} {Pfam: RING-type zinc-finger [PF13445.8, score=40.4]; Zinc finger, C3HC4 type (RING finger) [PF00097.27, score=30.3]; zinc-RING finger domain [PF14634.8, score=30.3]; zinc finger of C3HC4-type, RING [PF15227.8, score=30.0]; Zinc finger, C3HC4 type (RING finger) [PF13923.8, score=28.9]; Ring finger domain [PF13639.8, score=28.7]; Zinc finger, C3HC4 type (RING finger) [PF13920.8, score=28.1]} {Human: ENSG00000248710, AC079594.2, novel tripartite motif-containing 59 (TRIM59) and intraflagellar transport 80 homolog (Chlamydomonas) (IFT80) protein, [Score=69.3, Expect=4e-12]; ENSG00000169871, TRIM56, tripartite motif containing 56, [Score=68.2, Expect=8e-12]; ENSG00000213186, TRIM59, tripartite motif containing 59, [Score=68.2, Expect=5e-12]} {Mouse: ENSMUSG00000043279, Trim56, tripartite motif-containing 56, [Score=64.7, Expect=8e-11]; ENSMUSG00000034317, Trim59, tripartite motif-containing 59, [Score=64.3, Expect=7e-11]; ENSMUSG00000027993, Trim2, tripartite motif-containing 2, [Score=62.0, Expect=5e-10]} {Dmel: FBgn0265356, tn, thin, [Score=52.0, Expect=7e-07]} {Celegans: WBGene00003597, nhl-1, RING finger protein nhl-1, [Score=49.3, Expect=4e-06]} {Smed: dd_Smed_v6_8395_0_1, dd_Smed_v6_8395_0_1, [Score=68.2, Expect=2e-12]} {RNA1509_26427} {RNA1310_13871} {RNA815_8116.1} Mlig455_057459 {REF} {Length: 1860} {Pfam: RING-type zinc-finger [PF13445.8, score=40.5]; Zinc finger, C3HC4 type (RING finger) [PF00097.27, score=30.2]; zinc-RING finger domain [PF14634.8, score=30.2]; zinc finger of C3HC4-type, RING [PF15227.8, score=30.0]; Zinc finger, C3HC4 type (RING finger) [PF13923.8, score=28.9]; Ring finger domain [PF13639.8, score=28.7]; Zinc finger, C3HC4 type (RING finger) [PF13920.8, score=28.0]} {Human: ENSG00000248710, AC079594.2, novel tripartite motif-containing 59 (TRIM59) and intraflagellar transport 80 homolog (Chlamydomonas) (IFT80) protein, [Score=69.3, Expect=4e-12]; ENSG00000213186, TRIM59, tripartite motif containing 59, [Score=68.6, Expect=5e-12]; ENSG00000169871, TRIM56, tripartite motif containing 56, [Score=68.2, Expect=8e-12]} {Mouse: ENSMUSG00000043279, Trim56, tripartite motif-containing 56, [Score=64.7, Expect=8e-11]; ENSMUSG00000034317, Trim59, tripartite motif-containing 59, [Score=64.3, Expect=8e-11]; ENSMUSG00000027993, Trim2, tripartite motif-containing 2, [Score=62.0, Expect=5e-10]} {Dmel: FBgn0265356, tn, thin, [Score=52.0, Expect=7e-07]} {Celegans: WBGene00003597, nhl-1, RING finger protein nhl-1, [Score=49.3, Expect=4e-06]} {Smed: dd_Smed_v6_8395_0_1, dd_Smed_v6_8395_0_1, [Score=67.8, Expect=3e-12]} {RNA1509_11850} {RNA1310_13871} {RNA815_8116.1}
3.	MligTC455_48402	634	13.21	Mlig455_030570	Neo: - Age: -	GNG7	0.961	-	-	-	0.961	-	-	Mlig455_030570 {REF} {Length: 3661} {Pfam: GGL domain [PF00631.24, score=54.6]} {Human: ENSG00000176533, GNG7, G protein subunit gamma 7, [RH, Score=61.6, Expect=4e-14]} {Mouse: ENSMUSG00000048240, Gng7, guanine nucleotide binding protein (G protein), gamma 7, [RH, Score=59.7, Expect=2e-13]; ENSMUSG00000036402, Gng12, guanine nucleotide binding protein (G protein), gamma 12, [RH, Score=58.5, Expect=4e-13]} {Dmel: FBgn0004921, Ggamma1, G protein gamma 1, [RH, Score=68.2, Expect=5e-17]} {Celegans: WBGene00001681, gpc-1, Guanine nucleotide-binding protein subunit gamma, [Score=50.8, Expect=2e-10]} {Smed: dd_Smed_v6_1237_0_1, dd_Smed_v6_1237_0_1, [Score=68.6, Expect=2e-17]} {RNA1509_51198, RNA1509_55683} {RNA1310_34893, RNA1509_51198, RNA1509_55683} {RNA1509_51198, RNA1509_55683, RNA815_16453.1}

Nr.

Cluster

Total UMI counts

Global CPM

Transcripts

Categories

Human homolog

Σ Spearman correlations

Int1

Int2

Int3

Reg1

Reg2

Reg3

Annotation

MligTC455_50444

6877

143.27

Mlig455_038937

Neo: -

Age: -

ARF1

1.000

MligTC455_44554

2121

44.19

Mlig455_056025, Mlig455_057459

Neo: Irradiation

Age: -

AC079594.2

1.769

0.795

0.974

Mlig455_056025 {REF} {Length: 3009} {tRNA: Val(CAC),pseudo, score=27.9} {Pfam: RING-type zinc-finger [PF13445.8, score=40.4]; Zinc finger, C3HC4 type (RING finger) [PF00097.27, score=30.3]; zinc-RING finger domain [PF14634.8, score=30.3]; zinc finger of C3HC4-type, RING [PF15227.8, score=30.0]; Zinc finger, C3HC4 type (RING finger) [PF13923.8, score=28.9]; Ring finger domain [PF13639.8, score=28.7]; Zinc finger, C3HC4 type (RING finger) [PF13920.8, score=28.1]} {Human: ENSG00000248710, AC079594.2, novel tripartite motif-containing 59 (TRIM59) and intraflagellar transport 80 homolog (Chlamydomonas) (IFT80) protein, [Score=69.3, Expect=4e-12]; ENSG00000169871, TRIM56, tripartite motif containing 56, [Score=68.2, Expect=8e-12]; ENSG00000213186, TRIM59, tripartite motif containing 59, [Score=68.2, Expect=5e-12]} {Mouse: ENSMUSG00000043279, Trim56, tripartite motif-containing 56, [Score=64.7, Expect=8e-11]; ENSMUSG00000034317, Trim59, tripartite motif-containing 59, [Score=64.3, Expect=7e-11]; ENSMUSG00000027993, Trim2, tripartite motif-containing 2, [Score=62.0, Expect=5e-10]} {Dmel: FBgn0265356, tn, thin, [Score=52.0, Expect=7e-07]} {Celegans: WBGene00003597, nhl-1, RING finger protein nhl-1, [Score=49.3, Expect=4e-06]} {Smed: dd_Smed_v6_8395_0_1, dd_Smed_v6_8395_0_1, [Score=68.2, Expect=2e-12]} {RNA1509_26427} {RNA1310_13871} {RNA815_8116.1}

Mlig455_057459 {REF} {Length: 1860} {Pfam: RING-type zinc-finger [PF13445.8, score=40.5]; Zinc finger, C3HC4 type (RING finger) [PF00097.27, score=30.2]; zinc-RING finger domain [PF14634.8, score=30.2]; zinc finger of C3HC4-type, RING [PF15227.8, score=30.0]; Zinc finger, C3HC4 type (RING finger) [PF13923.8, score=28.9]; Ring finger domain [PF13639.8, score=28.7]; Zinc finger, C3HC4 type (RING finger) [PF13920.8, score=28.0]} {Human: ENSG00000248710, AC079594.2, novel tripartite motif-containing 59 (TRIM59) and intraflagellar transport 80 homolog (Chlamydomonas) (IFT80) protein, [Score=69.3, Expect=4e-12]; ENSG00000213186, TRIM59, tripartite motif containing 59, [Score=68.6, Expect=5e-12]; ENSG00000169871, TRIM56, tripartite motif containing 56, [Score=68.2, Expect=8e-12]} {Mouse: ENSMUSG00000043279, Trim56, tripartite motif-containing 56, [Score=64.7, Expect=8e-11]; ENSMUSG00000034317, Trim59, tripartite motif-containing 59, [Score=64.3, Expect=8e-11]; ENSMUSG00000027993, Trim2, tripartite motif-containing 2, [Score=62.0, Expect=5e-10]} {Dmel: FBgn0265356, tn, thin, [Score=52.0, Expect=7e-07]} {Celegans: WBGene00003597, nhl-1, RING finger protein nhl-1, [Score=49.3, Expect=4e-06]} {Smed: dd_Smed_v6_8395_0_1, dd_Smed_v6_8395_0_1, [Score=67.8, Expect=3e-12]} {RNA1509_11850} {RNA1310_13871} {RNA815_8116.1}

MligTC455_48402

634

13.21

Mlig455_030570

Neo: -

Age: -

GNG7

0.961

Mlig455_030570 {REF} {Length: 3661} {Pfam: GGL domain [PF00631.24, score=54.6]} {Human: ENSG00000176533, GNG7, G protein subunit gamma 7, [RH, Score=61.6, Expect=4e-14]} {Mouse: ENSMUSG00000048240, Gng7, guanine nucleotide binding protein (G protein), gamma 7, [RH, Score=59.7, Expect=2e-13]; ENSMUSG00000036402, Gng12, guanine nucleotide binding protein (G protein), gamma 12, [RH, Score=58.5, Expect=4e-13]} {Dmel: FBgn0004921, Ggamma1, G protein gamma 1, [RH, Score=68.2, Expect=5e-17]} {Celegans: WBGene00001681, gpc-1, Guanine nucleotide-binding protein subunit gamma, [Score=50.8, Expect=2e-10]} {Smed: dd_Smed_v6_1237_0_1, dd_Smed_v6_1237_0_1, [Score=68.6, Expect=2e-17]} {RNA1509_51198, RNA1509_55683} {RNA1310_34893, RNA1509_51198, RNA1509_55683} {RNA1509_51198, RNA1509_55683, RNA815_16453.1}