M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_50457

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_50457 4929 102.68 Mlig455_039257, Mlig455_039282

Neo: -

Age: Down-Down-Up

Mlig455_039257 {REF} {Length: 1590} {RNA1509_31327, RNA1509_7490, RNA1509_8833} {RNA1310_24774.1, RNA1509_31327, RNA1509_7490} {RNA1509_31327, RNA1509_7490, RNA815_3160}

Mlig455_039282 {REF} {Length: 1587} {RNA1509_8833} {RNA1310_24774.1} {RNA815_3160}

Cumulative graph for MligTC455_50457

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -1.446 6.753 0.01224 0.31799
RegionR2 0.256 6.753 0.44671 0.83489
RegionR3 0.275 6.753 0.34207 0.87835
RegionR4 0.486 6.753 0.16200 0.42053
RegionR5 -0.016 6.753 0.95775 1.00000
RegionR6 0.137 6.753 0.64006 1.00000
RegionR7 -0.318 6.753 0.32086 0.95634
RegionR8 0.625 6.753 0.04960 0.43720

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 0.448 6.753 0.54806 1.00000
RegenerationR2 -0.556 6.753 0.13062 0.55634
RegenerationR3 -0.726 6.753 0.05755 0.41192
RegenerationR4 -0.694 6.753 0.07464 0.43437
RegenerationR5 -0.552 6.753 0.13655 0.54683
RegenerationR6 -0.841 6.753 0.02946 0.21421
RegenerationBL -0.466 6.753 0.18284 0.51229
RegenerationTP 0.377 6.753 0.28735 0.73329


Genes with expression patterns similar to MligTC455_50457

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_50457 4929 102.68 Mlig455_039257, Mlig455_039282

Neo: -

Age: Down-Down-Up

 6 1.000 1.000 1.000 1.000 1.000 1.000

Mlig455_039257 {REF} {Length: 1590} {RNA1509_31327, RNA1509_7490, RNA1509_8833} {RNA1310_24774.1, RNA1509_31327, RNA1509_7490} {RNA1509_31327, RNA1509_7490, RNA815_3160}

Mlig455_039282 {REF} {Length: 1587} {RNA1509_8833} {RNA1310_24774.1} {RNA815_3160}
2. MligTC455_28159 7804 162.58 Mlig455_008686, Mlig455_009829, Mlig455_015131, Mlig455_016397, Mlig455_022590, Mlig455_028707, Mlig455_031710, Mlig455_031902, Mlig455_037775, Mlig455_047701, Mlig455_051855, Mlig455_057654

Neo: -

Age: -

Region-enriched R4: 1.566/0.00335

 2.424 0.762 0.700 - - 0.962 -

Mlig455_008686 {REF} {Length: 1432} {TRANSSPLICED} {RNA1509_34101} {RNA1310_16919.1} {RNA815_22812.1}

Mlig455_009829 {REF} {Length: 744} {TRANSSPLICED} {RNA1509_11222} {RNA1310_16919.1} {RNA815_22812.1}

Mlig455_015131 {REF} {Length: 745} {TRANSSPLICED} {RNA1509_11222} {RNA1310_16919.1} {RNA815_22812.1}

Mlig455_016397 {REF} {Length: 744} {TRANSSPLICED} {RNA1509_11222} {RNA1310_16919.1} {RNA815_22812.1}

Mlig455_022590 {REF} {Length: 739} {TRANSSPLICED} {RNA1509_11222} {RNA1310_16919.1} {RNA815_22812.1}

Mlig455_028707 {REF} {Length: 1054} {TRANSSPLICED} {RNA1509_11222} {RNA1310_16919.1} {RNA815_22812.1}

Mlig455_031710 {REF} {Length: 745} {TRANSSPLICED} {RNA1509_11222} {RNA1310_16919.1} {RNA815_22812.1}

Mlig455_031902 {REF} {Length: 539} {TRANSSPLICED} {RNA1509_34101} {RNA1310_16919.1} {RNA815_22812.1}

Mlig455_037775 {REF} {Length: 744} {TRANSSPLICED} {RNA1509_11222} {RNA1310_16919.1} {RNA815_22812.1}

Mlig455_047701 {REF} {Length: 948} {TRANSSPLICED} {RNA1509_34101} {RNA1310_46799} {RNA815_22648}

Mlig455_051855 {REF} {Length: 744} {TRANSSPLICED} {RNA1509_11222} {RNA1310_16919.1} {RNA815_22812.1}

Mlig455_057654 {REF} {Length: 3877} {RNA1509_34101} {RNA1310_39704} {RNA815_22648}
3. MligTC455_38954 972 20.25 Mlig455_002856

Neo: -

Age: logFC(26M/2M)=-0.269

 1.848 - - - 0.955 - 0.893 Mlig455_002856 {REF} {Length: 3353} {TRANSSPLICED} {Pfam: Isochorismatase family [PF00857.22, score=105.4]; EF-hand domain pair [PF13499.8, score=37.4]; EF hand [PF00036.34, score=34.7]; EF-hand domain [PF13405.8, score=32.3]; EF hand [PF13202.8, score=27.4]} {Dmel: FBgn0051216, Naam, Nicotinamide amidase, [Score=233, Expect=7e-74]} {Celegans: WBGene00021395, pnc-1, Pyrazinamidase and NiCotinamidase, [Score=133, Expect=3e-36]} {Smed: dd_Smed_v6_11420_0_1, dd_Smed_v6_11420_0_1, [RH, Score=229, Expect=2e-72]} {RNA1509_49219, RNA1509_49984} {RNA1310_20574.1, RNA1509_49219} {RNA1509_49219, RNA815_8269}
4. MligTC455_08783 3961 82.53 Mlig455_056775

Neo: -

Age: logFC(26M/2M)=-0.220

 1.736 - 0.765 - 0.971 - - Mlig455_056775 {REF} {Length: 1638} {Pfam: Myelin proteolipid protein (PLP or lipophilin) [PF01275.21, score=86.3]} {Dmel: FBgn0037092, M6, [RH, Score=81.3, Expect=5e-18]} {Smed: dd_Smed_v6_5426_1_1, dd_Smed_v6_5426_1_1, [RH, Score=175, Expect=5e-54]} {RNA1509_11501, RNA1509_40202} {RNA1310_23492, RNA1509_40202} {RNA1509_40202, RNA815_8938.1}
5. MligTC455_26887 7607 158.47 Mlig455_022436

Neo: -

Age: -

Region-enriched R7: 5.346/0.00000
Region-enriched R8: 4.002/0.00000

Regeneration-depleted BL: -6.390
Regeneration-depleted R6: -4.854

 0.975 - - - - 0.975 - Mlig455_022436 {REF} {Length: 2812} {NoTransDecoderORF} {RNA1509_1460} {RNA1310_27964} {RNA815_19312}
6. MligTC455_35188 340 7.08 Mlig455_017705, Mlig455_017757

Neo: -

Age: -

Region-enriched R7: 4.175/0.00000

 PLEKHB1 0.974 - - - - 0.974 -

Mlig455_017705 {REF} {Length: 1121} {Pfam: PH domain [PF00169.31, score=38.5]} {Human: ENSG00000021300, PLEKHB1, pleckstrin homology domain containing B1, [RH, Score=76.6, Expect=1e-16]; ENSG00000115762, PLEKHB2, pleckstrin homology domain containing B2, [RH, Score=75.5, Expect=3e-16]} {Mouse: ENSMUSG00000030701, Plekhb1, pleckstrin homology domain containing, family B (evectins) member 1, [RH, Score=79.7, Expect=5e-18]; ENSMUSG00000026123, Plekhb2, pleckstrin homology domain containing, family B (evectins) member 2, [RH, Score=78.2, Expect=2e-17]} {Smed: dd_Smed_v6_1927_0_1, dd_Smed_v6_1927_0_1, [RH, Score=124, Expect=4e-35]} {RNA1509_56045} {RNA1310_40666.2} {RNA815_39297}

Mlig455_017757 {REF} {Length: 1030} {Pfam: PH domain [PF00169.31, score=38.5]} {Human: ENSG00000021300, PLEKHB1, pleckstrin homology domain containing B1, [RH, Score=76.6, Expect=1e-16]; ENSG00000115762, PLEKHB2, pleckstrin homology domain containing B2, [RH, Score=75.5, Expect=3e-16]} {Mouse: ENSMUSG00000030701, Plekhb1, pleckstrin homology domain containing, family B (evectins) member 1, [RH, Score=79.7, Expect=5e-18]; ENSMUSG00000026123, Plekhb2, pleckstrin homology domain containing, family B (evectins) member 2, [RH, Score=78.2, Expect=2e-17]} {Smed: dd_Smed_v6_1927_0_1, dd_Smed_v6_1927_0_1, [RH, Score=124, Expect=4e-35]} {RNA1509_56045} {RNA1310_40666.2, RNA1509_56045} {RNA1509_56045, RNA815_39297}
7. MligTC455_38821 9020 187.93 Mlig455_051359

Neo: -

Age: -

Region-enriched R7: 5.050/0.00000
Region-enriched R6: 2.511/0.02048

Regeneration-depleted BL: -5.143
Regeneration-depleted R6: -4.476

 0.972 - - - - 0.972 - Mlig455_051359 {REF} {Length: 779} {RNA1509_11519, RNA1509_13605, RNA1509_21637, RNA1509_27966, RNA1509_4839} {RNA1310_36379.2, RNA1509_11519, RNA1509_13605, RNA1509_21637, RNA1509_4839} {RNA1509_11519, RNA1509_13605, RNA1509_21637, RNA1509_4839, RNA815_10535.2}
8. MligTC455_30279 171 3.57 Mlig455_003682, Mlig455_026254, Mlig455_034156, Mlig455_071093

Neo: -

Age: -

 0.964 - - - - 0.964 -

Mlig455_003682 {REF} {Length: 1016} {Pfam: Recombination endonuclease VII [PF02945.17, score=32.5]} {Celegans: WBGene00016348, C33E10.6, [Score=126, Expect=6e-32]} {Smed: dd_Smed_v6_9974_1_5, dd_Smed_v6_9974_1_5, [Score=117, Expect=4e-29]} {RNA1509_43415} {RNA1310_554.1} {RNA815_1342.1}

Mlig455_026254 {REF} {Length: 1016} {Pfam: Recombination endonuclease VII [PF02945.17, score=32.5]} {Celegans: WBGene00016348, C33E10.6, [Score=124, Expect=2e-31]} {Smed: dd_Smed_v6_9974_1_5, dd_Smed_v6_9974_1_5, [Score=117, Expect=4e-29]} {RNA1509_43415} {RNA1310_554.1} {RNA815_1342.1}

Mlig455_034156 {REF} {Length: 1012} {Pfam: Recombination endonuclease VII [PF02945.17, score=33.1]; DNA polymerase type B, organellar and viral [PF03175.15, score=26.5]} {Celegans: WBGene00016348, C33E10.6, [Score=119, Expect=2e-30]} {Smed: dd_Smed_v6_9974_1_5, dd_Smed_v6_9974_1_5, [Score=107, Expect=1e-26]} {RNA1509_43415} {RNA1310_554.1, RNA1509_43415} {RNA1509_43415, RNA815_1342.1}

Mlig455_071093 {REF} {Length: 1019} {Pfam: Recombination endonuclease VII [PF02945.17, score=32.0]} {Celegans: WBGene00016348, C33E10.6, [Score=66.2, Expect=3e-13]} {Smed: dd_Smed_v6_3574_2_45, dd_Smed_v6_3574_2_45, [Score=77.0, Expect=4e-19]} {RNA1509_43415} {RNA1310_554.1} {RNA815_1342.1}
9. MligTC455_40260 7083 147.57 Mlig455_058193

Neo: -

Age: Down-Up-Down, logFC(26M/2M)=-0.425

Region-enriched R7: 5.743/0.00000
Region-enriched R8: 4.581/0.00001

Regeneration-depleted BL: -13.476
Regeneration-depleted R6: -8.784

 AVP 0.964 - - - - 0.964 - Mlig455_058193 {REF} {Length: 1929} {Pfam: Neurohypophysial hormones, C-terminal Domain [PF00184.19, score=58.6]} {Human: ENSG00000101200, AVP, arginine vasopressin, [RH, Score=58.5, Expect=2e-10]} {Mouse: ENSMUSG00000037727, Avp, arginine vasopressin, [RH, Score=63.9, Expect=2e-12]} {RNA1509_15970} {RNA1310_46866} {RNA815_23759}
10. MligTC455_32815 200 4.17 Mlig455_024296

Neo: -

Age: Down-Up-Up

 0.963 - - - - 0.963 - Mlig455_024296 {REF} {Length: 7900} {TRANSSPLICED} {RNA1509_27479} {RNA1310_7639, RNA1509_27479} {RNA1509_27479, RNA815_28985}
11. MligTC455_42850 4024 83.83 Mlig455_015521

Neo: -

Age: Down-Up-Down

 UBE2D1 0.963 - - - - 0.963 - Mlig455_015521 {REF} {Length: 1219} {TRANSSPLICED} {Pfam: Ubiquitin-conjugating enzyme [PF00179.28, score=177.7]; RWD domain [PF05773.24, score=19.2]} {Human: ENSG00000072401, UBE2D1, ubiquitin conjugating enzyme E2 D1, [Score=220, Expect=2e-74]; ENSG00000131508, UBE2D2, ubiquitin conjugating enzyme E2 D2, [Score=216, Expect=6e-73]; ENSG00000078967, UBE2D4, ubiquitin conjugating enzyme E2 D4 (putative), [Score=215, Expect=1e-72]; ENSG00000109332, UBE2D3, ubiquitin conjugating enzyme E2 D3, [Score=214, Expect=3e-72]} {Mouse: ENSMUSG00000019927, Ube2d1, ubiquitin-conjugating enzyme E2D 1, [Score=220, Expect=1e-74]; ENSMUSG00000091896, Ube2d2a, ubiquitin-conjugating enzyme E2D 2A, [Score=216, Expect=4e-73]; ENSMUSG00000078578, Ube2d3, ubiquitin-conjugating enzyme E2D 3, [Score=214, Expect=2e-72]; ENSMUSG00000063447, Ube2d2b, ubiquitin-conjugating enzyme E2D 2B, [Score=210, Expect=8e-71]} {Dmel: FBgn0011217, eff, effete, [Score=218, Expect=3e-74]} {Celegans: WBGene00002344, let-70, Ubiquitin-conjugating enzyme E2 2, [Score=215, Expect=3e-73]} {Smed: dd_Smed_v6_153_0_1, dd_Smed_v6_153_0_1, [Score=207, Expect=3e-70]} {RNA1509_2455, RNA1509_48761, RNA1509_50674} {RNA1310_17733.1, RNA1509_2455, RNA1509_48761, RNA1509_50674} {RNA1509_2455, RNA1509_48761, RNA1509_50674, RNA815_17002}
12. MligTC455_28999 610 12.71 Mlig455_007005

Neo: -

Age: -

Region-enriched R2: 3.115/0.00304

 0.955 - - - - 0.955 - Mlig455_007005 {REF} {Length: 4082} {TRANSSPLICED} {Pfam: PHD-finger [PF00628.31, score=23.6]; Phorbol esters/diacylglycerol binding domain (C1 domain) [PF00130.24, score=21.0]} {RNA1509_29353} {RNA1310_22648} {RNA815_21225}
13. MligTC455_29055 220 4.58 Mlig455_033755

Neo: -

Age: -

 0.954 - - - - 0.954 - Mlig455_033755 {REF} {Length: 2091} {RNA1509_54569} {RNA1310_8245} {RNA815_27178}
14. MligTC455_11640 15 0.31 Mlig455_017137

Neo: -

Age: -

 0.953 - - - - 0.953 - Mlig455_017137 {REF} {Length: 505} {RNA1310_6611}
15. MligTC455_26494 37480 780.83 Mlig455_012450, Mlig455_012452, Mlig455_012453

Neo: -

Age: logFC(26M/2M)=0.332

Region-enriched R4: 1.161/0.04853

 0.953 - - - - 0.953 -

Mlig455_012450 {REF} {Length: 639} {TRANSSPLICED} {RNA1509_39210} {RNA1310_67854.1} {RNA815_3012.1}

Mlig455_012452 {REF} {Length: 789} {TRANSSPLICED} {RNA1509_39210} {RNA1310_67854.1} {RNA815_3012.1}

Mlig455_012453 {REF} {Length: 521} {TRANSSPLICED} {RNA1509_39210} {RNA1310_67854.1} {RNA815_3012.1}
16. MligTC455_26498 16790 349.8 Mlig455_012463

Neo: -

Age: -

Region-enriched R3: 1.143/0.02974

 0.953 - - - - 0.953 - Mlig455_012463 {REF} {Length: 522} {TRANSSPLICED} {Pfam: Translation machinery associated TMA7 [PF09072.12, score=68.0]} {Smed: dd_Smed_v6_563_0_1, dd_Smed_v6_563_0_1, [RH, Score=66.2, Expect=4e-15]} {RNA1509_6941} {RNA1310_24480.1} {RNA815_481.1}
17. MligTC455_26499 50486 1051.78 Mlig455_012568, Mlig455_012570, Mlig455_012572

Neo: -

Age: Down-Down-Up

Region-enriched R3: 1.102/0.04740

 0.953 - - - - 0.953 -

Mlig455_012568 {REF} {Length: 517} {TRANSSPLICED} {Pfam: Translation machinery associated TMA7 [PF09072.12, score=68.0]} {Smed: dd_Smed_v6_563_0_1, dd_Smed_v6_563_0_1, [RH, Score=66.2, Expect=4e-15]} {RNA1509_6941} {RNA1310_24480.1} {RNA815_481.1}

Mlig455_012570 {REF} {Length: 517} {TRANSSPLICED} {Pfam: Translation machinery associated TMA7 [PF09072.12, score=68.0]} {Smed: dd_Smed_v6_563_0_1, dd_Smed_v6_563_0_1, [RH, Score=66.2, Expect=4e-15]} {RNA1509_6941} {RNA1310_24480.1} {RNA815_481.1}

Mlig455_012572 {REF} {Length: 939} {TRANSSPLICED} {Pfam: Translation machinery associated TMA7 [PF09072.12, score=67.2]} {Smed: dd_Smed_v6_563_0_1, dd_Smed_v6_563_0_1, [RH, Score=66.6, Expect=7e-15]} {RNA1509_15612, RNA1509_32962, RNA1509_40781, RNA1509_46060, RNA1509_58043, RNA1509_6941} {RNA1310_24480.1, RNA1509_15612, RNA1509_32962, RNA1509_40781, RNA1509_46060, RNA1509_58043} {RNA1509_15612, RNA1509_32962, RNA1509_40781, RNA1509_46060, RNA1509_58043, RNA815_481.1}
18. MligTC455_11243 1262 26.3 Mlig455_017598

Neo: -

Age: Down-Down-Down, logFC(26M/2M)=-0.726

Region-enriched R7: 6.884/0.00000
Region-enriched R8: 5.473/0.00000

Regeneration-depleted BL: -12.009
Regeneration-depleted R6: -6.552

 0.951 - - - - 0.951 - Mlig455_017598 {REF} {Length: 1025} {RNA1310_38289} {RNA815_37649}
19. MligTC455_17537 3637 75.77 Mlig455_038674

Neo: -

Age: Down-Down-Down, logFC(26M/2M)=-0.584

Region-enriched R7: 4.572/0.00000
Region-enriched R8: 2.714/0.00006
Region-enriched R6: 1.821/0.02874

Regeneration-downregulated BL: -4.835

Regeneration-depleted BL: -4.835

 WSCD2 0.951 - - - - 0.951 - Mlig455_038674 {REF} {Length: 1556} {Pfam: WSC domain [PF01822.21, score=121.6]} {Human: ENSG00000075035, WSCD2, WSC domain containing 2, [RH, Score=95.9, Expect=6e-22]} {Mouse: ENSMUSG00000063430, Wscd2, WSC domain containing 2, [RH, Score=90.9, Expect=2e-20]; ENSMUSG00000020811, Wscd1, WSC domain containing 1, [RH, Score=86.7, Expect=5e-19]} {Celegans: WBGene00005024, sqv-6, Xylosyltransferase sqv-6, [Score=52.4, Expect=1e-07]} {RNA1509_23111, RNA1509_24119, RNA1509_30167, RNA1509_41668, RNA1509_43794, RNA1509_55038, RNA1509_8803} {RNA1310_23857, RNA1509_23111, RNA1509_24119, RNA1509_30167, RNA1509_41668, RNA1509_43794, RNA1509_55038, RNA1509_8803} {RNA1509_23111, RNA1509_24119, RNA1509_30167, RNA1509_41668, RNA1509_43794, RNA1509_55038, RNA1509_8803, RNA815_10933}
20. MligTC455_21560 12198 254.13 Mlig455_059034

Neo: -

Age: Down-Up-Up

 0.951 - - - - 0.951 - Mlig455_059034 {REF} {Length: 1510} {Pfam: AIG1 family [PF04548.18, score=33.4]; 50S ribosome-binding GTPase [PF01926.25, score=33.2]; Dynamin family [PF00350.25, score=21.6]} {RNA1509_2495, RNA1509_4849, RNA1509_58949, RNA1509_6353, RNA1509_8870} {RNA1310_39963, RNA1509_2495, RNA1509_4849, RNA1509_58949, RNA1509_6353, RNA1509_8870} {RNA1509_2495, RNA1509_4849, RNA1509_58949, RNA1509_6353, RNA1509_8870, RNA815_18333}
21. MligTC455_27122 1937 40.35 Mlig455_036943

Neo: -

Age: logFC(26M/2M)=-0.328

 0.951 - - - - 0.951 - Mlig455_036943 {REF} {Length: 2654} {RNA1509_51779, RNA1509_58276} {RNA1310_29995.1, RNA1509_51779} {RNA1509_51779, RNA815_9865}
22. MligTC455_36067 417 8.69 Mlig455_014957, Mlig455_018347, Mlig455_032700

Neo: -

Age: Up-Down-Down

Regeneration-upregulated TP: 2.713

Regeneration-enriched TP: 2.713

 0.951 - - - - 0.951 -

Mlig455_014957 {REF} {Length: 2824} {TRANSSPLICED} {RNA1509_11969} {RNA1310_732.1} {RNA815_9144}

Mlig455_018347 {REF} {Length: 1226} {TRANSSPLICED} {RNA1509_11969} {RNA1310_21436} {RNA815_13089}

Mlig455_032700 {REF} {Length: 515} {TRANSSPLICED} {RNA1509_60134} {RNA1310_732.3} {RNA815_13089}
23. MligTC455_13565 32 0.67 Mlig455_010042

Neo: -

Age: -

 0.95 - - - - 0.950 - Mlig455_010042 {REF} {Length: 586} {NoTransDecoderORF} {RNA1310_28599}
24. MligTC455_15102 12 0.25 Mlig455_048874

Neo: -

Age: -

 0.95 - - - - 0.950 - Mlig455_048874 {REF} {Length: 1450} {NoTransDecoderORF}
25. MligTC455_33166 57 1.2 Mlig455_059521

Neo: -

Age: Down-Up-Down

 0.95 - - - - 0.950 - Mlig455_059521 {REF} {Length: 812} {NoTransDecoderORF} {RNA1509_31268} {RNA1310_8042.1} {RNA815_21467}
26. MligTC455_47630 25 0.52 Mlig455_038763

Neo: -

Age: Up-Down-Down

 NF1 0.95 - - - - 0.950 - Mlig455_038763 {REF} {Length: 3503} {Human: ENSG00000196712, NF1, neurofibromin 1, [Score=654, Expect=0.0]} {Mouse: ENSMUSG00000020716, Nf1, neurofibromin 1, [Score=656, Expect=0.0]} {Dmel: FBgn0015269, Nf1, Neurofibromin 1, [Score=635, Expect=0.0]} {Smed: dd_Smed_v6_7869_0_1, dd_Smed_v6_7869_0_1, [Score=838, Expect=0.0]} {RNA1509_13374} {RNA1310_7389.1, RNA1509_13374} {RNA1509_13374, RNA815_1058}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA