M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_50569

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_50569 218 4.55 Mlig455_041700

Neo: -

Age: Up-Down-Down

Region-enriched R4: 2.260/0.00304

 Mlig455_041700 {REF} {Length: 2595} {TRANSSPLICED} {Pfam: RUN domain [PF02759.21, score=27.9]; Phosphotyrosine interaction domain (PTB/PID) [PF00640.25, score=22.0]} {Smed: dd_Smed_v6_9759_0_1, dd_Smed_v6_9759_0_1, [RH, Score=354, Expect=1e-117]} {RNA1509_17501} {RNA1310_19467} {RNA815_7943}

Cumulative graph for MligTC455_50569

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -0.367 2.841 0.83117 1.00000
RegionR2 -0.375 2.841 0.63309 0.97321
RegionR3 -0.461 2.841 0.48837 0.98742
RegionR4 2.26 2.841 0.00022 0.00304
RegionR5 0.137 2.841 0.80035 1.00000
RegionR6 0.354 2.841 0.56358 1.00000
RegionR7 -1.737 2.841 0.09845 0.60028
RegionR8 0.189 2.841 0.84013 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -5.554 2.841 0.29953 0.99621
RegenerationR2 0.256 2.841 0.68252 0.94956
RegenerationR3 0.467 2.841 0.49999 0.85716
RegenerationR4 -1.549 2.841 0.01450 0.18854
RegenerationR5 -0.2 2.841 0.74010 0.96849
RegenerationR6 -0.113 2.841 0.86612 1.00000
RegenerationBL -1.045 2.841 0.35045 0.71794
RegenerationTP 0.281 2.841 0.78170 1.00000


Genes with expression patterns similar to MligTC455_50569

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_50569 218 4.55 Mlig455_041700

Neo: -

Age: Up-Down-Down

Region-enriched R4: 2.260/0.00304

 6 1.000 1.000 1.000 1.000 1.000 1.000 Mlig455_041700 {REF} {Length: 2595} {TRANSSPLICED} {Pfam: RUN domain [PF02759.21, score=27.9]; Phosphotyrosine interaction domain (PTB/PID) [PF00640.25, score=22.0]} {Smed: dd_Smed_v6_9759_0_1, dd_Smed_v6_9759_0_1, [RH, Score=354, Expect=1e-117]} {RNA1509_17501} {RNA1310_19467} {RNA815_7943}
2. MligTC455_44150 758 15.79 Mlig455_025864, Mlig455_025926

Neo: -

Age: -

Region-enriched R4: 1.881/0.03608

 0.961 - - - - - 0.961

Mlig455_025864 {REF} {Length: 1731} {TRANSSPLICED} {Pfam: BRCT domain, a BRCA1 C-terminus domain [PF16589.7, score=31.5]} {RNA1509_35624} {RNA1310_17989} {RNA815_6968}

Mlig455_025926 {REF} {Length: 1729} {TRANSSPLICED} {Pfam: BRCT domain, a BRCA1 C-terminus domain [PF16589.7, score=31.5]} {RNA1509_35624, RNA1509_40991} {RNA1310_17989, RNA1509_35624, RNA1509_40991} {RNA1509_35624, RNA1509_40991, RNA815_6968}
3. MligTC455_28039 100 2.08 Mlig455_005432

Neo: -

Age: -

 0.959 - - - - 0.959 - Mlig455_005432 {REF} {Length: 95} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_1780} {RNA1310_56275} {RNA815_9113.1}
4. MligTC455_08766 108 2.26 Mlig455_041068, Mlig455_064710

Neo: -

Age: -

Region-enriched R8: 4.728/0.01274

 0.957 - 0.957 - - - -

Mlig455_041068 {REF} {Length: 1348} {RNA1310_17243} {RNA815_50437}

Mlig455_064710 {REF} {Length: 1055} {RNA1310_2126} {RNA815_5560.1}
5. MligTC455_44151 380 7.91 Mlig455_025957

Neo: -

Age: Down-Down-Up

Region-enriched R4: 1.743/0.03659

 PCM1 0.957 - - - - - 0.957 Mlig455_025957 {REF} {Length: 4634} {TRANSSPLICED} {Pfam: Pericentriolar material 1 C terminus [PF15717.7, score=204.8]} {Human: ENSG00000078674, PCM1, pericentriolar material 1, [Score=197, Expect=3e-50]} {Mouse: ENSMUSG00000031592, Pcm1, pericentriolar material 1, [Score=195, Expect=9e-50]} {RNA1509_4175} {RNA1310_1887} {RNA815_3794.1}
6. MligTC455_34060 623 12.99 Mlig455_032031

Neo: -

Age: -

 CYP2U1 0.953 - - - - - 0.953 Mlig455_032031 {REF} {Length: 2280} {Pfam: Cytochrome P450 [PF00067.24, score=317.2]} {Human: ENSG00000155016, CYP2U1, cytochrome P450 family 2 subfamily U member 1, [Score=230, Expect=2e-68]; ENSG00000138115, CYP2C8, cytochrome P450 family 2 subfamily C member 8, [Score=221, Expect=2e-65]} {Mouse: ENSMUSG00000052914, Cyp2j6, cytochrome P450, family 2, subfamily j, polypeptide 6, [Score=246, Expect=3e-75]; ENSMUSG00000052520, Cyp2j5, cytochrome P450, family 2, subfamily j, polypeptide 5, [Score=240, Expect=1e-72]; ENSMUSG00000028571, Cyp2j13, cytochrome P450, family 2, subfamily j, polypeptide 13, [Score=235, Expect=5e-71]} {Dmel: FBgn0010383, Cyp18a1, Cytochrome P450-18a1, [Score=222, Expect=1e-65]} {Celegans: WBGene00016860, cyp-33C9, CYtochrome P450 family, [Score=207, Expect=2e-60]} {Smed: dd_Smed_v6_2351_0_2, dd_Smed_v6_2351_0_2, [Score=253, Expect=3e-78]} {RNA1509_16425, RNA1509_32217} {RNA1310_14742, RNA1509_16425, RNA1509_32217} {RNA1509_16425, RNA1509_32217, RNA815_5450}
7. MligTC455_52771 304 6.33 Mlig455_029195

Neo: -

Age: Down-Down-Up

Region-enriched R5: 1.274/0.00675

 ZNF233 0.951 - - - - - 0.951 Mlig455_029195 {REF} {Length: 2267} {TRANSSPLICED} {Pfam: Zinc-finger double domain [PF13465.8, score=74.2]; C2H2-type zinc finger [PF13894.8, score=51.8]; Zinc finger, C2H2 type [PF00096.28, score=47.6]; C2H2-type zinc finger [PF13912.8, score=39.4]; Zinc-finger double-stranded RNA-binding [PF12171.10, score=33.5]; Drought induced 19 protein (Di19), zinc-binding [PF05605.14, score=20.3]} {Human: ENSG00000159915, ZNF233, zinc finger protein 233, [Score=107, Expect=5e-27]} {Mouse: ENSMUSG00000074865, Zfp934, zinc finger protein 934, [Score=111, Expect=9e-29]; ENSMUSG00000059423, Zfp933, zinc finger protein 933, [Score=110, Expect=3e-28]; ENSMUSG00000090744, Gm6871, predicted gene 6871, [Score=108, Expect=2e-27]; ENSMUSG00000074867, Zfp808, zinc finger protein 808, [Score=108, Expect=2e-27]; ENSMUSG00000087598, Zfp111, zinc finger protein 111, [Score=108, Expect=2e-27]} {Dmel: FBgn0035625, Blimp-1, [Score=100, Expect=9e-25]} {Celegans: WBGene00003847, blmp-1, B lymphocyte-induced maturation protein 1 homolog, [Score=101, Expect=4e-25]} {Smed: dd_Smed_v6_75162_0_1, dd_Smed_v6_75162_0_1, [Score=95.5, Expect=4e-25]} {RNA1509_10690} {RNA1310_16637} {RNA815_8191}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA