TomoSeq data search

Data search

Results for MligTC455_50708

Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Annotation
MligTC455_50708	88	1.84	Mlig455_042201	Neo: - Age: Down-Up-Up, logFC(26M/2M)=0.665	RBM42	Mlig455_042201 {REF} {Length: 2019} {TRANSSPLICED} {Pfam: Galactose oxidase, central domain [PF13418.8, score=82.0]; RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) [PF00076.24, score=66.6]; Kelch motif [PF13964.8, score=65.0]; Kelch motif [PF13854.8, score=55.4]; Galactose oxidase, central domain [PF13415.8, score=49.8]; Kelch motif [PF07646.17, score=40.0]; Kelch motif [PF01344.27, score=35.1]} {Human: ENSG00000126254, RBM42, RNA binding motif protein 42, [RH, Score=186, Expect=6e-51]} {Mouse: ENSMUSG00000036733, Rbm42, RNA binding motif protein 42, [RH, Score=187, Expect=6e-51]} {Dmel: FBgn0037342, CG2931, [Score=177, Expect=2e-49]} {Celegans: WBGene00021901, tag-262, [RH, Score=206, Expect=7e-60]} {Smed: dd_Smed_v6_9591_0_1, dd_Smed_v6_9591_0_1, [RH, Score=139, Expect=9e-37]} {RNA1509_39624} {RNA1310_42297} {RNA815_21133}

Cluster

Total UMI counts

Global CPM

Transcripts

Categories

Human homolog

Annotation

MligTC455_50708

1.84

Mlig455_042201

Neo: -

Age: Down-Up-Up, logFC(26M/2M)=0.665

RBM42

Mlig455_042201 {REF} {Length: 2019} {TRANSSPLICED} {Pfam: Galactose oxidase, central domain [PF13418.8, score=82.0]; RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) [PF00076.24, score=66.6]; Kelch motif [PF13964.8, score=65.0]; Kelch motif [PF13854.8, score=55.4]; Galactose oxidase, central domain [PF13415.8, score=49.8]; Kelch motif [PF07646.17, score=40.0]; Kelch motif [PF01344.27, score=35.1]} {Human: ENSG00000126254, RBM42, RNA binding motif protein 42, [RH, Score=186, Expect=6e-51]} {Mouse: ENSMUSG00000036733, Rbm42, RNA binding motif protein 42, [RH, Score=187, Expect=6e-51]} {Dmel: FBgn0037342, CG2931, [Score=177, Expect=2e-49]} {Celegans: WBGene00021901, tag-262, [RH, Score=206, Expect=7e-60]} {Smed: dd_Smed_v6_9591_0_1, dd_Smed_v6_9591_0_1, [RH, Score=139, Expect=9e-37]} {RNA1509_39624} {RNA1310_42297} {RNA815_21133}

Cumulative graph for MligTC455_50708

Region-enriched expression

Region	logFC	logCPM	Pvalue	FDR
RegionR1	-0.668	1.705	0.99959	1.00000
RegionR2	-1.081	1.705	0.95503	1.00000
RegionR3	0.013	1.705	0.79885	1.00000
RegionR4	2.524	1.705	0.20279	0.48341
RegionR5	0.691	1.705	0.55933	0.91935
RegionR6	0.512	1.705	0.66286	1.00000
RegionR7	1.401	1.705	0.44214	1.00000
RegionR8	-3.394	1.705	0.99977	1.00000

Regeneration-enriched expression

Region	logFC	logCPM	PValue	FDR
RegenerationR1	-0.946	1.705	0.99995	1.00000
RegenerationR2	1.887	1.705	0.13544	0.56264
RegenerationR3	1.154	1.705	0.50210	0.85793
RegenerationR4	0.68	1.705	0.72611	0.96333
RegenerationR5	2.249	1.705	0.12535	0.52867
RegenerationR6	2.184	1.705	0.12807	0.43991
RegenerationBL	4.166	1.705	0.01398	0.12316
RegenerationTP	-2.958	1.705	1.00000	1.00000

Genes with expression patterns similar to MligTC455_50708

Nr.	Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Σ Spearman correlations	Int1	Int2	Int3	Reg1	Reg2	Reg3	Annotation
1.	MligTC455_50708	88	1.84	Mlig455_042201	Neo: - Age: Down-Up-Up, logFC(26M/2M)=0.665	RBM42	3	-	-	1.000	-	1.000	1.000	Mlig455_042201 {REF} {Length: 2019} {TRANSSPLICED} {Pfam: Galactose oxidase, central domain [PF13418.8, score=82.0]; RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) [PF00076.24, score=66.6]; Kelch motif [PF13964.8, score=65.0]; Kelch motif [PF13854.8, score=55.4]; Galactose oxidase, central domain [PF13415.8, score=49.8]; Kelch motif [PF07646.17, score=40.0]; Kelch motif [PF01344.27, score=35.1]} {Human: ENSG00000126254, RBM42, RNA binding motif protein 42, [RH, Score=186, Expect=6e-51]} {Mouse: ENSMUSG00000036733, Rbm42, RNA binding motif protein 42, [RH, Score=187, Expect=6e-51]} {Dmel: FBgn0037342, CG2931, [Score=177, Expect=2e-49]} {Celegans: WBGene00021901, tag-262, [RH, Score=206, Expect=7e-60]} {Smed: dd_Smed_v6_9591_0_1, dd_Smed_v6_9591_0_1, [RH, Score=139, Expect=9e-37]} {RNA1509_39624} {RNA1310_42297} {RNA815_21133}
2.	MligTC455_40946	312	6.5	Mlig455_067804	Neo: - Age: Up-Down-Up	LCMT2	0.951	-	-	0.951	-	-	-	Mlig455_067804 {REF} {Length: 3120} {TRANSSPLICED} {Pfam: Leucine carboxyl methyltransferase [PF04072.16, score=83.5]} {Human: ENSG00000168806, LCMT2, leucine carboxyl methyltransferase 2, [RH, Score=228, Expect=6e-64]} {Mouse: ENSMUSG00000074890, Lcmt2, leucine carboxyl methyltransferase 2, [RH, Score=239, Expect=4e-68]} {Dmel: FBgn0028507, CG3793, [Score=175, Expect=2e-48]} {Celegans: WBGene00007137, B0285.4, Probable leucine carboxyl methyltransferase 1, [Score=134, Expect=2e-34]} {Smed: dd_Smed_v6_3702_0_1, dd_Smed_v6_3702_0_1, [RH, Score=286, Expect=5e-85]} {RNA1509_29463} {RNA1310_7945.1, RNA1509_29463} {RNA1509_29463, RNA815_13873.1}

Nr.

Cluster

Total UMI counts

Global CPM

Transcripts

Categories

Human homolog

Σ Spearman correlations

Int1

Int2

Int3

Reg1

Reg2

Reg3

Annotation

MligTC455_50708

1.84

Mlig455_042201

Neo: -

Age: Down-Up-Up, logFC(26M/2M)=0.665

RBM42

1.000

MligTC455_40946

312

6.5

Mlig455_067804

Neo: -

Age: Up-Down-Up

LCMT2

0.951

Mlig455_067804 {REF} {Length: 3120} {TRANSSPLICED} {Pfam: Leucine carboxyl methyltransferase [PF04072.16, score=83.5]} {Human: ENSG00000168806, LCMT2, leucine carboxyl methyltransferase 2, [RH, Score=228, Expect=6e-64]} {Mouse: ENSMUSG00000074890, Lcmt2, leucine carboxyl methyltransferase 2, [RH, Score=239, Expect=4e-68]} {Dmel: FBgn0028507, CG3793, [Score=175, Expect=2e-48]} {Celegans: WBGene00007137, B0285.4, Probable leucine carboxyl methyltransferase 1, [Score=134, Expect=2e-34]} {Smed: dd_Smed_v6_3702_0_1, dd_Smed_v6_3702_0_1, [RH, Score=286, Expect=5e-85]} {RNA1509_29463} {RNA1310_7945.1, RNA1509_29463} {RNA1509_29463, RNA815_13873.1}