Data search
Results for MligTC455_50725
| Cluster | Total UMI counts | Global CPM | Transcripts | Categories | Human homolog | Annotation |
|---|---|---|---|---|---|---|
| MligTC455_50725 | 334 | 6.97 | Mlig455_003803 | Neo: - Age: Up-Down-Down |
Mlig455_003803 {REF} {Length: 3670} {TRANSSPLICED} {Pfam: C2H2-type zinc finger [PF13894.8, score=31.2]; Zinc finger, C2H2 type [PF00096.28, score=26.0]; Drought induced 19 protein (Di19), zinc-binding [PF05605.14, score=20.1]; zinc-finger C2H2-type [PF16622.7, score=19.7]; Zinc-finger double domain [PF13465.8, score=19.1]; zinc-finger of a C2HC-type [PF13913.8, score=19.1]} {RNA1509_1946} {RNA1310_8728} {RNA815_20590} |
Cumulative graph for MligTC455_50725
Region-enriched expression
| Region | logFC | logCPM | Pvalue | FDR | Specificity |
|---|---|---|---|---|---|
| RegionR1 | -0.385 | 3.228 | 0.80636 | 1.00000 | |
| RegionR2 | 1.155 | 3.228 | 0.04588 | 0.25279 | |
| RegionR3 | -0.482 | 3.228 | 0.34407 | 0.87974 | |
| RegionR4 | 0.102 | 3.228 | 0.85470 | 1.00000 | |
| RegionR5 | 0.473 | 3.228 | 0.25063 | 0.56692 | |
| RegionR6 | 0.459 | 3.228 | 0.33955 | 0.92704 | |
| RegionR7 | -1.013 | 3.228 | 0.19787 | 0.80455 | |
| RegionR8 | -0.31 | 3.228 | 0.72731 | 1.00000 |
Regeneration-enriched expression
| Region | logFC | logCPM | PValue | FDR | Specificity |
|---|---|---|---|---|---|
| RegenerationR1 | -5.412 | 3.228 | 0.31694 | 1.00000 | |
| RegenerationR2 | -0.417 | 3.228 | 0.32204 | 0.75972 | |
| RegenerationR3 | 0.263 | 3.228 | 0.63117 | 0.92074 | |
| RegenerationR4 | -0.216 | 3.228 | 0.68729 | 0.94809 | |
| RegenerationR5 | 0.187 | 3.228 | 0.67614 | 0.94326 | |
| RegenerationR6 | 0.096 | 3.228 | 0.84631 | 0.99845 | |
| RegenerationBL | 0.942 | 3.228 | 0.15904 | 0.47755 | |
| RegenerationTP | 0.776 | 3.228 | 0.32331 | 0.76764 |
Genes with expression patterns similar to MligTC455_50725
| Nr. | Cluster | Total UMI counts | Global CPM | Transcripts | Categories | Human homolog | Σ Spearman correlations | Int1 | Int2 | Int3 | Reg1 | Reg2 | Reg3 | Annotation |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1. | MligTC455_50725 | 334 | 6.97 | Mlig455_003803 | Neo: - Age: Up-Down-Down |
6 | 1.000 | 1.000 | 1.000 | 1.000 | 1.000 | 1.000 | Mlig455_003803 {REF} {Length: 3670} {TRANSSPLICED} {Pfam: C2H2-type zinc finger [PF13894.8, score=31.2]; Zinc finger, C2H2 type [PF00096.28, score=26.0]; Drought induced 19 protein (Di19), zinc-binding [PF05605.14, score=20.1]; zinc-finger C2H2-type [PF16622.7, score=19.7]; Zinc-finger double domain [PF13465.8, score=19.1]; zinc-finger of a C2HC-type [PF13913.8, score=19.1]} {RNA1509_1946} {RNA1310_8728} {RNA815_20590} | |
| 2. | MligTC455_36124 | 485 | 10.1 | Mlig455_021463, Mlig455_067345 | Neo: - Age: - Region-enriched R5: 1.039/0.02201 |
LZTS3 | 1.758 | - | - | - | - | 0.950 | 0.808 | Mlig455_021463 {REF} {Length: 2649} {TRANSSPLICED} {Pfam: Fez1 [PF06818.17, score=43.5]} {Human: ENSG00000088899, LZTS3, leucine zipper tumor suppressor family member 3, [Score=49.3, Expect=1e-05]} {Mouse: ENSMUSG00000037703, Lzts3, leucine zipper, putative tumor suppressor family member 3, [Score=48.5, Expect=1e-05]} {RNA1509_39406} {RNA1310_16279.1, RNA1509_39406} {RNA1509_39406, RNA815_18126} Mlig455_067345 {REF} {Length: 3391} {TRANSSPLICED} {Pfam: Fez1 [PF06818.17, score=48.7]} {Human: ENSG00000088899, LZTS3, leucine zipper tumor suppressor family member 3, [Score=48.1, Expect=1e-05]} {Mouse: ENSMUSG00000037703, Lzts3, leucine zipper, putative tumor suppressor family member 3, [Score=47.8, Expect=8e-06]} {RNA1509_39406} {RNA1310_24643} {RNA815_18126} |
| 3. | MligTC455_12229 | 199 | 4.14 | Mlig455_036322 | Neo: - Age: - |
CAMSAP3 | 1.719 | 0.954 | - | - | - | - | 0.765 | Mlig455_036322 {REF} {Length: 8055} {TRANSSPLICED} {Pfam: Microtubule-binding calmodulin-regulated spectrin-associated [PF08683.13, score=139.5]} {Human: ENSG00000076826, CAMSAP3, calmodulin regulated spectrin associated protein family member 3, [Score=123, Expect=1e-27]; ENSG00000130559, CAMSAP1, calmodulin regulated spectrin associated protein 1, [Score=119, Expect=2e-26]} {Mouse: ENSMUSG00000044433, Camsap3, calmodulin regulated spectrin-associated protein family, member 3, [Score=123, Expect=8e-28]; ENSMUSG00000026933, Camsap1, calmodulin regulated spectrin-associated protein 1, [Score=119, Expect=3e-26]} {Dmel: FBgn0263197, Patronin, [Score=122, Expect=2e-27]} {Celegans: WBGene00004121, ptrn-1, Patronin (microtubule-binding protein) homolog, [Score=125, Expect=1e-30]} {Smed: dd_Smed_v6_7356_0_1, dd_Smed_v6_7356_0_1, [Score=158, Expect=8e-39]} {RNA1509_13577} {RNA1310_1488} {RNA815_13505} |
| 4. | MligTC455_25802 | 373 | 7.77 | Mlig455_020238, Mlig455_040926, Mlig455_040927, Mlig455_043949 | Neo: - Age: Up-Down-Up Region-enriched R4: 2.322/0.03456 |
NYNRIN | 0.969 | 0.969 | - | - | - | - | - | Mlig455_020238 {REF} {Length: 2535} {Pfam: RNase H-like domain found in reverse transcriptase [PF17919.3, score=110.8]; RNase H-like domain found in reverse transcriptase [PF17917.3, score=101.9]; Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=85.5]; Integrase zinc binding domain [PF17921.3, score=59.5]; Integrase core domain [PF00665.28, score=54.8]; H2C2 zinc finger [PF09337.12, score=19.6]} {Human: ENSG00000205978, NYNRIN, NYN domain and retroviral integrase containing, [Score=76.6, Expect=2e-13]} {Mouse: ENSMUSG00000098639, Rtl1, retrotransposon Gaglike 1, [Score=89.7, Expect=9e-18]; ENSMUSG00000085925, Rtl1, retrotransposon Gaglike 1, [Score=89.7, Expect=9e-18]} {Smed: dd_Smed_v6_3718_0_2, dd_Smed_v6_3718_0_2, [Score=299, Expect=9e-88]} {RNA1509_41126} {RNA1310_3178} {RNA815_42463} Mlig455_040926 {REF} {Length: 3407} {Pfam: RNase H-like domain found in reverse transcriptase [PF17919.3, score=110.3]; RNase H-like domain found in reverse transcriptase [PF17917.3, score=101.4]; Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=84.9]; Integrase zinc binding domain [PF17921.3, score=60.1]; Integrase core domain [PF00665.28, score=54.5]; gag-polyprotein putative aspartyl protease [PF13975.8, score=25.7]; H2C2 zinc finger [PF09337.12, score=23.0]; Retroviral aspartyl protease [PF00077.22, score=21.7]; Aspartyl protease [PF13650.8, score=21.3]; Integrase core domain [PF13683.8, score=20.7]} {Human: ENSG00000205978, NYNRIN, NYN domain and retroviral integrase containing, [Score=78.2, Expect=6e-14]} {Mouse: ENSMUSG00000085925, Rtl1, retrotransposon Gaglike 1, [Score=91.3, Expect=5e-18]; ENSMUSG00000098639, Rtl1, retrotransposon Gaglike 1, [Score=91.3, Expect=5e-18]} {Smed: dd_Smed_v6_3718_0_2, dd_Smed_v6_3718_0_2, [Score=324, Expect=5e-95]} {RNA1509_41126} {RNA1310_3178} {RNA815_42463} Mlig455_040927 {REF} {Length: 2674} {TRANSSPLICED} {Pfam: Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=126.2]; Endonuclease-reverse transcriptase [PF14529.8, score=76.5]} {RNA1509_32599} {RNA1310_1659} {RNA815_252.1} Mlig455_043949 {REF} {Length: 2236} {Pfam: RNase H-like domain found in reverse transcriptase [PF17919.3, score=111.4]; RNase H-like domain found in reverse transcriptase [PF17917.3, score=102.4]; Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=85.1]} {Mouse: ENSMUSG00000085925, Rtl1, retrotransposon Gaglike 1, [Score=89.4, Expect=6e-18]; ENSMUSG00000098639, Rtl1, retrotransposon Gaglike 1, [Score=89.4, Expect=6e-18]} {Smed: dd_Smed_v6_1574_6_44, dd_Smed_v6_1574_6_44, [Score=249, Expect=9e-75]} {RNA1509_41126} {RNA1310_3178} {RNA815_42463} |
| 5. | MligTC455_45859 | 237 | 4.95 | Mlig455_068697 | Neo: Int S/G2/M Age: - |
FARSB | 0.956 | 0.956 | - | - | - | - | - | Mlig455_068697 {REF} {Length: 2901} {TRANSSPLICED} {Pfam: Phenylalanyl tRNA synthetase beta chain CLM domain [PF17759.3, score=165.2]; Phe-tRNA synthetase beta subunit B1 domain [PF18262.3, score=103.5]; B3/4 domain [PF03483.19, score=82.1]; tRNA synthetase B5 domain [PF03484.17, score=60.4]} {Human: ENSG00000116120, FARSB, phenylalanyl-tRNA synthetase subunit beta, [RH, Score=681, Expect=0.0]} {Mouse: ENSMUSG00000026245, Farsb, phenylalanyl-tRNA synthetase, beta subunit, [RH, Score=681, Expect=0.0]} {Dmel: FBgn0039175, beta-PheRS, Phenylalanyl-tRNA synthetase, beta-subunit, [RH, Score=677, Expect=0.0]} {Celegans: WBGene00001498, fars-3, Phenylalanine--tRNA ligase beta subunit, [RH, Score=653, Expect=0.0]} {Smed: dd_Smed_v6_2020_0_1, dd_Smed_v6_2020_0_1, [RH, Score=510, Expect=1e-175]} {RNA1509_10740} {RNA1310_12802} {RNA815_4058} |
| 6. | MligTC455_51933 | 583 | 12.15 | Mlig455_024511 | Neo: - Age: logFC(26M/2M)=-0.429 Region-enriched R2: 2.089/0.00081 |
CBSL | 0.951 | 0.951 | - | - | - | - | - | Mlig455_024511 {REF} {Length: 1959} {Pfam: Pyridoxal-phosphate dependent enzyme [PF00291.27, score=138.0]; CBS domain [PF00571.30, score=48.9]} {Human: ENSG00000274276, CBSL, cystathionine-beta-synthase like, [Score=463, Expect=3e-160]; ENSG00000160200, CBS, cystathionine-beta-synthase, [Score=463, Expect=3e-160]} {Mouse: ENSMUSG00000024039, Cbs, cystathionine beta-synthase, [Score=467, Expect=6e-162]} {Dmel: FBgn0031148, Cbs, centrosomin's beautiful sister, [Score=327, Expect=2e-107]} {Celegans: WBGene00013866, cbs-1, Cystathionine Beta-Synthase, [Score=264, Expect=2e-81]} {Smed: dd_Smed_v6_1585_0_1, dd_Smed_v6_1585_0_1, [Score=511, Expect=6e-180]} {RNA1509_36721} {RNA1310_10809} {RNA815_3797.1} |
| 7. | MligTC455_46906 | 7598 | 158.29 | Mlig455_048917, Mlig455_048938 | Neo: Int S/G2/M Age: logFC(26M/2M)=0.232 Regeneration-upregulated BL: 1.675 Regeneration-enriched BL: 1.675 |
CCT6A | 0.95 | - | - | - | - | 0.950 | - | Mlig455_048917 {REF} {Length: 2315} {TRANSSPLICED} {Pfam: TCP-1/cpn60 chaperonin family [PF00118.26, score=537.5]} {Human: ENSG00000146731, CCT6A, chaperonin containing TCP1 subunit 6A, [RH, Score=755, Expect=0.0]; ENSG00000132141, CCT6B, chaperonin containing TCP1 subunit 6B, [RH, Score=727, Expect=0.0]} {Mouse: ENSMUSG00000020698, Cct6b, chaperonin containing Tcp1, subunit 6b (zeta), [RH, Score=689, Expect=0.0]} {Dmel: FBgn0027329, CCT6, Chaperonin containing TCP1 subunit 6, [RH, Score=690, Expect=0.0]} {Celegans: WBGene00000381, cct-6, T-complex protein 1 subunit zeta, [RH, Score=684, Expect=0.0]} {Smed: dd_Smed_v6_527_0_1, dd_Smed_v6_527_0_1, [RH, Score=720, Expect=0.0]} {RNA1509_20084, RNA1509_26540, RNA1509_919} {RNA1310_10081.1, RNA1509_20084, RNA1509_26540, RNA1509_919} {RNA1509_20084, RNA1509_26540, RNA1509_919, RNA815_2404.1} Mlig455_048938 {REF} {Length: 2351} {TRANSSPLICED} {Pfam: TCP-1/cpn60 chaperonin family [PF00118.26, score=536.5]} {Human: ENSG00000146731, CCT6A, chaperonin containing TCP1 subunit 6A, [RH, Score=755, Expect=0.0]; ENSG00000132141, CCT6B, chaperonin containing TCP1 subunit 6B, [RH, Score=724, Expect=0.0]} {Mouse: ENSMUSG00000020698, Cct6b, chaperonin containing Tcp1, subunit 6b (zeta), [RH, Score=687, Expect=0.0]} {Dmel: FBgn0027329, CCT6, Chaperonin containing TCP1 subunit 6, [RH, Score=689, Expect=0.0]} {Celegans: WBGene00000381, cct-6, T-complex protein 1 subunit zeta, [RH, Score=681, Expect=0.0]} {Smed: dd_Smed_v6_527_0_1, dd_Smed_v6_527_0_1, [RH, Score=719, Expect=0.0]} {RNA1509_19311, RNA1509_20084, RNA1509_27335} {RNA1310_10081.1, RNA1509_19311, RNA1509_27335} {RNA1509_19311, RNA1509_27335, RNA815_2404.1} |