M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_50803

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_50803 460 9.57 Mlig455_041302, Mlig455_056204

Neo: Int S/G2/M

Age: -

Mlig455_041302 {REF} {Length: 2338} {TRANSSPLICED} {Dmel: FBgn0032231, CG5056, [Score=47.8, Expect=5e-06]} {RNA1509_13988, RNA1509_25247, RNA1509_47902} {RNA1310_32681, RNA1509_13988, RNA1509_25247, RNA1509_47902} {RNA1509_13988, RNA1509_25247, RNA1509_47902, RNA815_13181}

Mlig455_056204 {REF} {Length: 247} {NoTransDecoderORF} {RNA1509_13988} {RNA1310_102661} {RNA815_52115}

Cumulative graph for MligTC455_50803

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 0.536 3.537 0.58499 1.00000
RegionR2 0.387 3.537 0.55797 0.92099
RegionR3 -0.398 3.537 0.42301 0.94550
RegionR4 -0.421 3.537 0.47187 0.79974
RegionR5 0.079 3.537 0.85205 1.00000
RegionR6 -0.431 3.537 0.38575 0.96288
RegionR7 -0.63 3.537 0.33167 0.96637
RegionR8 0.878 3.537 0.18875 0.77878

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -5.843 3.537 0.21990 0.95484
RegenerationR2 -0.328 3.537 0.60438 0.91742
RegenerationR3 0.239 3.537 0.72674 0.95671
RegenerationR4 -1.206 3.537 0.07218 0.42733
RegenerationR5 -0.595 3.537 0.33122 0.75232
RegenerationR6 0.049 3.537 0.94657 1.00000
RegenerationBL -1.044 3.537 0.31688 0.68350
RegenerationTP 0.535 3.537 0.50048 0.90104


Genes with expression patterns similar to MligTC455_50803

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_50803 460 9.57 Mlig455_041302, Mlig455_056204

Neo: Int S/G2/M

Age: -

 6 1.000 1.000 1.000 1.000 1.000 1.000

Mlig455_041302 {REF} {Length: 2338} {TRANSSPLICED} {Dmel: FBgn0032231, CG5056, [Score=47.8, Expect=5e-06]} {RNA1509_13988, RNA1509_25247, RNA1509_47902} {RNA1310_32681, RNA1509_13988, RNA1509_25247, RNA1509_47902} {RNA1509_13988, RNA1509_25247, RNA1509_47902, RNA815_13181}

Mlig455_056204 {REF} {Length: 247} {NoTransDecoderORF} {RNA1509_13988} {RNA1310_102661} {RNA815_52115}
2. MligTC455_43091 159 3.31 Mlig455_012706

Neo: -

Age: -

 SPAST 1.797 - - 0.842 - - 0.955 Mlig455_012706 {REF} {Length: 3310} {TRANSSPLICED} {Pfam: ATPase family associated with various cellular activities (AAA) [PF00004.31, score=127.2]; AAA+ lid domain [PF17862.3, score=38.6]; Holliday junction DNA helicase RuvB P-loop domain [PF05496.14, score=25.4]; AAA domain [PF13401.8, score=21.8]; TIP49 P-loop domain [PF06068.15, score=20.7]; IstB-like ATP binding protein [PF01695.19, score=20.2]; Bacterial TniB protein [PF05621.13, score=18.6]} {Human: ENSG00000021574, SPAST, spastin, [RH, Score=343, Expect=4e-113]} {Mouse: ENSMUSG00000024068, Spast, spastin, [RH, Score=339, Expect=2e-110]} {Dmel: FBgn0039141, spas, spastin, [RH, Score=327, Expect=8e-105]} {Celegans: WBGene00016045, spas-1, Probable spastin homolog spas-1, [RH, Score=306, Expect=2e-99]} {Smed: dd_Smed_v6_7472_0_1, dd_Smed_v6_7472_0_1, [RH, Score=323, Expect=3e-105]} {RNA1509_31393, RNA1509_60086} {RNA1310_17702, RNA1509_31393, RNA1509_60086} {RNA1509_31393, RNA1509_60086, RNA815_24923}
3. MligTC455_19686 199 4.15 Mlig455_037617

Neo: Int S/G2/M

Age: Down-Up-Down

 CCNQ 0.965 - - - - - 0.965 Mlig455_037617 {REF} {Length: 2073} {TRANSSPLICED} {Pfam: Cyclin, N-terminal domain [PF00134.25, score=29.6]} {Human: ENSG00000262919, CCNQ, cyclin Q, [RH, Score=126, Expect=1e-35]} {Mouse: ENSMUSG00000049489, Ccnq, cyclin Q, [RH, Score=126, Expect=2e-35]} {Dmel: FBgn0040394, CG16903, [Score=65.5, Expect=3e-12]} {Smed: dd_Smed_v6_9138_0_3, dd_Smed_v6_9138_0_3, [RH, Score=106, Expect=2e-28]} {RNA1509_34677} {RNA1310_40105.1} {RNA815_11835}
4. MligTC455_36496 283 5.89 Mlig455_018138

Neo: -

Age: Down-Up-Up

 TAF5 0.961 - - - - - 0.961 Mlig455_018138 {REF} {Length: 2151} {TRANSSPLICED} {Pfam: WD domain, G-beta repeat [PF00400.34, score=126.9]; WD40 associated region in TFIID subunit, NTD2 domain [PF04494.17, score=93.6]; Anaphase-promoting complex subunit 4 WD40 domain [PF12894.9, score=44.8]; WD40 region of Ge1, enhancer of mRNA-decapping protein [PF16529.7, score=18.3]} {Human: ENSG00000148835, TAF5, TATA-box binding protein associated factor 5, [RH, Score=424, Expect=8e-138]} {Mouse: ENSMUSG00000025049, Taf5, TATA-box binding protein associated factor 5, [RH, Score=423, Expect=1e-137]} {Dmel: FBgn0010356, Taf5, TBP-associated factor 5, [RH, Score=378, Expect=1e-121]} {Celegans: WBGene00006386, taf-5, TAF (TBP-associated transcription factor) family, [RH, Score=254, Expect=2e-75]} {Smed: dd_Smed_v6_7319_0_1, dd_Smed_v6_7319_0_1, [Score=310, Expect=8e-96]} {RNA1509_15120} {RNA1310_12001} {RNA815_9687}
5. MligTC455_53864 798 16.62 Mlig455_000259, Mlig455_058540

Neo: -

Age: Up-Down-Down

 0.96 - - - - 0.960 -

Mlig455_000259 {REF} {Length: 2927} {TRANSSPLICED} {RNA1509_45388} {RNA1310_23577} {RNA815_43499}

Mlig455_058540 {REF} {Length: 2095} {TRANSSPLICED} {RNA1509_45388} {RNA1310_23577} {RNA815_43499}
6. MligTC455_10713 613 12.78 Mlig455_006846, Mlig455_052188, Mlig455_063999, Mlig455_070416

Neo: -

Age: Up-Down-Down

 RTL1 0.95 - - - - - 0.950

Mlig455_006846 {REF} {Length: 248} {Pfam: Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=104.2]; RNase H-like domain found in reverse transcriptase [PF17917.3, score=100.1]; RNase H-like domain found in reverse transcriptase [PF17919.3, score=99.4]; Integrase core domain [PF00665.28, score=49.1]; Integrase zinc binding domain [PF17921.3, score=38.4]; Aspartyl protease [PF13650.8, score=25.0]; gag-polyprotein putative aspartyl protease [PF13975.8, score=24.0]} {Human: ENSG00000254656, RTL1, retrotransposon Gag like 1, [Score=112, Expect=6e-24]} {Mouse: ENSMUSG00000085925, Rtl1, retrotransposon Gaglike 1, [Score=91.3, Expect=9e-18]; ENSMUSG00000098639, Rtl1, retrotransposon Gaglike 1, [Score=91.3, Expect=9e-18]} {Smed: dd_Smed_v6_1574_6_44, dd_Smed_v6_1574_6_44, [Score=310, Expect=4e-92]} {RNA1509_18694} {RNA1310_109.1} {RNA815_187}

Mlig455_052188 {REF} {Length: 909} {Pfam: Retrotransposon gag protein [PF03732.19, score=19.3]} {RNA1509_18694} {RNA1310_109.1} {RNA815_187}

Mlig455_063999 {REF} {Length: 7708} {Pfam: Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=104.2]; RNase H-like domain found in reverse transcriptase [PF17917.3, score=100.1]; RNase H-like domain found in reverse transcriptase [PF17919.3, score=99.4]; Integrase core domain [PF00665.28, score=49.1]; Integrase zinc binding domain [PF17921.3, score=38.4]; Aspartyl protease [PF13650.8, score=25.0]; gag-polyprotein putative aspartyl protease [PF13975.8, score=24.0]} {Human: ENSG00000254656, RTL1, retrotransposon Gag like 1, [Score=112, Expect=6e-24]} {Mouse: ENSMUSG00000085925, Rtl1, retrotransposon Gaglike 1, [Score=91.3, Expect=9e-18]; ENSMUSG00000098639, Rtl1, retrotransposon Gaglike 1, [Score=91.3, Expect=9e-18]} {Smed: dd_Smed_v6_1574_6_44, dd_Smed_v6_1574_6_44, [Score=310, Expect=4e-92]} {RNA1509_15493, RNA1509_18694, RNA1509_3053} {RNA1310_109.1, RNA1509_15493, RNA1509_18694, RNA1509_3053} {RNA1509_15493, RNA1509_18694, RNA1509_3053, RNA815_187}

Mlig455_070416 {REF} {Length: 902} {Pfam: Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=104.2]; RNase H-like domain found in reverse transcriptase [PF17917.3, score=100.1]; RNase H-like domain found in reverse transcriptase [PF17919.3, score=99.4]; Integrase core domain [PF00665.28, score=49.1]; Integrase zinc binding domain [PF17921.3, score=38.4]; Aspartyl protease [PF13650.8, score=25.0]; gag-polyprotein putative aspartyl protease [PF13975.8, score=24.0]} {Human: ENSG00000254656, RTL1, retrotransposon Gag like 1, [Score=112, Expect=6e-24]} {Mouse: ENSMUSG00000085925, Rtl1, retrotransposon Gaglike 1, [Score=91.3, Expect=9e-18]; ENSMUSG00000098639, Rtl1, retrotransposon Gaglike 1, [Score=91.3, Expect=9e-18]} {Smed: dd_Smed_v6_1574_6_44, dd_Smed_v6_1574_6_44, [Score=310, Expect=4e-92]} {RNA1509_18694} {RNA1310_109.1} {RNA815_187}
7. MligTC455_19662 378 7.88 Mlig455_048088

Neo: -

Age: -

 0.95 - - 0.950 - - - Mlig455_048088 {REF} {Length: 1269} {TRANSSPLICED} {RNA1509_20403, RNA1509_27120} {RNA1310_37177, RNA1509_20403, RNA1509_27120} {RNA1509_20403, RNA1509_27120, RNA815_24197.1}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA