M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_50871

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_50871 2174 45.30 Mlig455_040828, Mlig455_040925

Neo: -

Age: Down-Up-Up

 LZTFL1

Mlig455_040828 {REF} {Length: 2208} {TRANSSPLICED} {Pfam: Leucine zipper [PF15294.8, score=247.8]; Laminin Domain II [PF06009.14, score=22.5]} {Human: ENSG00000163818, LZTFL1, leucine zipper transcription factor like 1, [RH, Score=237, Expect=5e-77]} {Mouse: ENSMUSG00000025245, Lztfl1, leucine zipper transcription factor-like 1, [RH, Score=244, Expect=1e-79]} {Smed: dd_Smed_v6_8415_0_1, dd_Smed_v6_8415_0_1, [RH, Score=224, Expect=4e-72]} {RNA1509_19172, RNA1509_23907, RNA1509_50120, RNA1509_9372} {RNA1310_27954, RNA1509_19172, RNA1509_23907, RNA1509_50120, RNA1509_9372} {RNA1509_19172, RNA1509_23907, RNA1509_50120, RNA1509_9372, RNA815_12109}

Mlig455_040925 {REF} {Length: 2208} {TRANSSPLICED} {Pfam: Leucine zipper [PF15294.8, score=249.5]; Laminin Domain II [PF06009.14, score=21.7]} {Human: ENSG00000163818, LZTFL1, leucine zipper transcription factor like 1, [RH, Score=238, Expect=4e-77]} {Mouse: ENSMUSG00000025245, Lztfl1, leucine zipper transcription factor-like 1, [RH, Score=244, Expect=5e-80]} {Smed: dd_Smed_v6_8415_0_1, dd_Smed_v6_8415_0_1, [RH, Score=224, Expect=2e-72]} {RNA1509_9372} {RNA1310_27954} {RNA815_12109}

Cumulative graph for MligTC455_50871

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -0.914 5.728 0.20529 0.84402
RegionR2 0.238 5.728 0.43753 0.82689
RegionR3 0.256 5.728 0.30767 0.84704
RegionR4 0.642 5.728 0.03640 0.15558
RegionR5 0.144 5.728 0.55171 0.91277
RegionR6 -0.118 5.728 0.65059 1.00000
RegionR7 0.143 5.728 0.62508 1.00000
RegionR8 -0.391 5.728 0.29420 0.92294

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -0.446 5.728 0.68974 1.00000
RegenerationR2 -0.284 5.728 0.29372 0.73666
RegenerationR3 -0.825 5.728 0.00557 0.13445
RegenerationR4 -0.56 5.728 0.06917 0.41898
RegenerationR5 -0.216 5.728 0.45057 0.83106
RegenerationR6 -0.551 5.728 0.07875 0.35044
RegenerationBL -0.366 5.728 0.27306 0.63287
RegenerationTP -0.861 5.728 0.02196 0.25194


Genes with expression patterns similar to MligTC455_50871

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_50871 2174 45.3 Mlig455_040828, Mlig455_040925

Neo: -

Age: Down-Up-Up

 LZTFL1 6 1.000 1.000 1.000 1.000 1.000 1.000

Mlig455_040828 {REF} {Length: 2208} {TRANSSPLICED} {Pfam: Leucine zipper [PF15294.8, score=247.8]; Laminin Domain II [PF06009.14, score=22.5]} {Human: ENSG00000163818, LZTFL1, leucine zipper transcription factor like 1, [RH, Score=237, Expect=5e-77]} {Mouse: ENSMUSG00000025245, Lztfl1, leucine zipper transcription factor-like 1, [RH, Score=244, Expect=1e-79]} {Smed: dd_Smed_v6_8415_0_1, dd_Smed_v6_8415_0_1, [RH, Score=224, Expect=4e-72]} {RNA1509_19172, RNA1509_23907, RNA1509_50120, RNA1509_9372} {RNA1310_27954, RNA1509_19172, RNA1509_23907, RNA1509_50120, RNA1509_9372} {RNA1509_19172, RNA1509_23907, RNA1509_50120, RNA1509_9372, RNA815_12109}

Mlig455_040925 {REF} {Length: 2208} {TRANSSPLICED} {Pfam: Leucine zipper [PF15294.8, score=249.5]; Laminin Domain II [PF06009.14, score=21.7]} {Human: ENSG00000163818, LZTFL1, leucine zipper transcription factor like 1, [RH, Score=238, Expect=4e-77]} {Mouse: ENSMUSG00000025245, Lztfl1, leucine zipper transcription factor-like 1, [RH, Score=244, Expect=5e-80]} {Smed: dd_Smed_v6_8415_0_1, dd_Smed_v6_8415_0_1, [RH, Score=224, Expect=2e-72]} {RNA1509_9372} {RNA1310_27954} {RNA815_12109}
2. MligTC455_31470 1339 27.91 Mlig455_002685

Neo: -

Age: logFC(26M/2M)=-0.799

 CCDC189 2.545 - 0.724 0.958 - - 0.863 Mlig455_002685 {REF} {Length: 1248} {Pfam: Flagellar C1a complex subunit C1a-32 [PF14769.8, score=115.2]} {Human: ENSG00000196118, CCDC189, coiled-coil domain containing 189, [RH, Score=129, Expect=1e-34]} {Mouse: ENSMUSG00000057176, Ccdc189, coiled-coil domain containing 189, [Score=133, Expect=3e-36]} {Smed: dd_Smed_v6_12703_0_1, dd_Smed_v6_12703_0_1, [RH, Score=162, Expect=4e-48]} {RNA1509_7747} {RNA1310_28715} {RNA815_12270.1}
3. MligTC455_53692 2518 52.45 Mlig455_040714

Neo: -

Age: -

 1.74 - - - - 0.952 0.788 Mlig455_040714 {REF} {Length: 844} {TRANSSPLICED} {RNA1509_41711, RNA1509_4919} {RNA1310_41175, RNA1509_41711, RNA1509_4919} {RNA1509_41711, RNA1509_4919, RNA815_21835}
4. MligTC455_17976 81 1.68 Mlig455_002059

Neo: -

Age: -

 0.962 - - - - 0.962 - Mlig455_002059 {REF} {Length: 730} {RNA1310_56725} {RNA815_29666}
5. MligTC455_38398 1841 38.35 Mlig455_047195

Neo: Int S/G2/M

Age: logFC(26M/2M)=0.714

 VCP 0.955 - - - 0.955 - - Mlig455_047195 {REF} {Length: 3282} {Pfam: ATPase family associated with various cellular activities (AAA) [PF00004.31, score=323.2]; AAA+ lid domain [PF17862.3, score=83.8]; Cell division protein 48 (CDC48), N-terminal domain [PF02359.20, score=75.5]; Holliday junction DNA helicase RuvB P-loop domain [PF05496.14, score=52.5]; AAA ATPase domain [PF13191.8, score=50.7]; AAA domain (Cdc48 subfamily) [PF07724.16, score=43.2]; AAA domain (dynein-related subfamily) [PF07728.16, score=41.5]; Cell division protein 48 (CDC48), domain 2 [PF02933.19, score=41.0]; AAA domain [PF13671.8, score=40.9]; Vps4 C terminal oligomerisation domain [PF09336.12, score=40.1]; AAA domain [PF13401.8, score=38.3]; TIP49 P-loop domain [PF06068.15, score=35.1]; AAA domain [PF13238.8, score=32.1]; RNA helicase [PF00910.24, score=31.2]; AAA domain [PF13173.8, score=29.7]; Magnesium chelatase, subunit ChlI [PF01078.23, score=29.0]; ABC transporter [PF00005.29, score=27.1]; IstB-like ATP binding protein [PF01695.19, score=27.1]; AAA domain [PF13521.8, score=27.0]; Parvovirus non-structural protein NS1 [PF01057.19, score=26.4]; P-loop containing dynein motor region [PF12775.9, score=26.1]; AAA domain [PF13207.8, score=25.5]; Bacterial dnaA protein [PF00308.20, score=24.8]; ATPase domain predominantly from Archaea [PF01637.20, score=24.3]; AAA domain [PF13481.8, score=23.5]; Threonylcarbamoyl adenosine biosynthesis protein TsaE [PF02367.19, score=23.1]; KaiC [PF06745.15, score=23.0]; AAA domain [PF13479.8, score=22.8]; Viral (Superfamily 1) RNA helicase [PF01443.20, score=22.2]; Sigma-54 interaction domain [PF00158.28, score=22.1]; NACHT domain [PF05729.14, score=21.1]; Zeta toxin [PF06414.14, score=21.1]; Protein of unknown function (DUF815) [PF05673.15, score=20.4]; Type III restriction enzyme, res subunit [PF04851.17, score=20.2]; NB-ARC domain [PF00931.24, score=20.0]; Sigma-54 interaction domain [PF14532.8, score=19.1]; ATPase family associated with various cellular activities (AAA) [PF07726.13, score=19.0]; Uncharacterized conserved protein (DUF2075) [PF09848.11, score=18.5]} {Human: ENSG00000165280, VCP, valosin containing protein, [RH, Score=1269, Expect=0.0]} {Mouse: ENSMUSG00000028452, Vcp, valosin containing protein, [RH, Score=1269, Expect=0.0]} {Dmel: FBgn0261014, TER94, [RH, Score=1271, Expect=0.0]} {Celegans: WBGene00008053, cdc-48.2, Transitional endoplasmic reticulum ATPase homolog 2, [RH, Score=1209, Expect=0.0]} {Smed: dd_Smed_v6_482_0_1, dd_Smed_v6_482_0_1, [RH, Score=1309, Expect=0.0]} {RNA1509_514} {RNA1310_4584} {RNA815_1672.2}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA