TomoSeq data search

Data search

Results for MligTC455_50934

Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Annotation
MligTC455_50934	258	5.38	Mlig455_022555, Mlig455_025473	Neo: - Age: -	PREX1	Mlig455_022555 {REF} {Length: 1711} {Pfam: RhoGEF domain [PF00621.22, score=89.1]} {Human: ENSG00000124126, PREX1, phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 1, [Score=60.8, Expect=2e-09]; ENSG00000114346, ECT2, epithelial cell transforming 2, [Score=58.5, Expect=1e-08]} {Mouse: ENSMUSG00000039621, Prex1, phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1, [Score=57.8, Expect=2e-08]; ENSMUSG00000037946, Fgd3, FYVE, RhoGEF and PH domain containing 3, [Score=55.5, Expect=6e-08]} {Dmel: FBgn0035761, RhoGEF4, Rho guanine nucleotide exchange factor 4, [Score=52.4, Expect=4e-07]} {Celegans: WBGene00019832, osg-1, Rho guanine nucleotide exchange factor osg-1, [Score=50.1, Expect=2e-06]} {Smed: dd_Smed_v6_102989_0_1, dd_Smed_v6_102989_0_1, [Score=45.8, Expect=1e-06]} {RNA1509_45595} {RNA1310_28855} {RNA815_52523} Mlig455_025473 {REF} {Length: 1888} {Pfam: RhoGEF domain [PF00621.22, score=112.2]} {Human: ENSG00000124126, PREX1, phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 1, [Score=75.5, Expect=1e-13]} {Mouse: ENSMUSG00000071392, Ect2l, epithelial cell transforming sequence 2 oncogene-like, [Score=77.0, Expect=2e-14]; ENSMUSG00000039621, Prex1, phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1, [Score=73.2, Expect=4e-13]} {Dmel: FBgn0035761, RhoGEF4, Rho guanine nucleotide exchange factor 4, [Score=72.4, Expect=3e-13]} {Celegans: WBGene00006431, tag-52, Putative protein tag-52, [Score=62.8, Expect=3e-10]} {Smed: dd_Smed_v6_2922_0_1, dd_Smed_v6_2922_0_1, [Score=56.2, Expect=3e-08]} {RNA1310_28855} {RNA815_32615}

Cluster

Total UMI counts

Global CPM

Transcripts

Categories

Human homolog

Annotation

MligTC455_50934

258

5.38

Mlig455_022555, Mlig455_025473

Neo: -

Age: -

PREX1

Mlig455_022555 {REF} {Length: 1711} {Pfam: RhoGEF domain [PF00621.22, score=89.1]} {Human: ENSG00000124126, PREX1, phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 1, [Score=60.8, Expect=2e-09]; ENSG00000114346, ECT2, epithelial cell transforming 2, [Score=58.5, Expect=1e-08]} {Mouse: ENSMUSG00000039621, Prex1, phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1, [Score=57.8, Expect=2e-08]; ENSMUSG00000037946, Fgd3, FYVE, RhoGEF and PH domain containing 3, [Score=55.5, Expect=6e-08]} {Dmel: FBgn0035761, RhoGEF4, Rho guanine nucleotide exchange factor 4, [Score=52.4, Expect=4e-07]} {Celegans: WBGene00019832, osg-1, Rho guanine nucleotide exchange factor osg-1, [Score=50.1, Expect=2e-06]} {Smed: dd_Smed_v6_102989_0_1, dd_Smed_v6_102989_0_1, [Score=45.8, Expect=1e-06]} {RNA1509_45595} {RNA1310_28855} {RNA815_52523}

Mlig455_025473 {REF} {Length: 1888} {Pfam: RhoGEF domain [PF00621.22, score=112.2]} {Human: ENSG00000124126, PREX1, phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 1, [Score=75.5, Expect=1e-13]} {Mouse: ENSMUSG00000071392, Ect2l, epithelial cell transforming sequence 2 oncogene-like, [Score=77.0, Expect=2e-14]; ENSMUSG00000039621, Prex1, phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1, [Score=73.2, Expect=4e-13]} {Dmel: FBgn0035761, RhoGEF4, Rho guanine nucleotide exchange factor 4, [Score=72.4, Expect=3e-13]} {Celegans: WBGene00006431, tag-52, Putative protein tag-52, [Score=62.8, Expect=3e-10]} {Smed: dd_Smed_v6_2922_0_1, dd_Smed_v6_2922_0_1, [Score=56.2, Expect=3e-08]} {RNA1310_28855} {RNA815_32615}

Cumulative graph for MligTC455_50934

Region-enriched expression

Region	logFC	logCPM	Pvalue	FDR
RegionR1	1.56	2.779	0.38273	1.00000
RegionR2	-0.327	2.779	0.63561	0.97516
RegionR3	-1.414	2.779	0.02758	0.28346
RegionR4	-0.234	2.779	0.76875	1.00000
RegionR5	-1.895	2.779	0.00362	0.02719
RegionR6	1.358	2.779	0.00779	0.14383
RegionR7	-0.847	2.779	0.34908	0.98592
RegionR8	1.8	2.779	0.01800	0.26118

Regeneration-enriched expression

Region	logFC	logCPM	PValue	FDR
RegenerationR1	-7.316	2.779	0.12260	0.85164
RegenerationR2	-0.677	2.779	0.25859	0.70524
RegenerationR3	-1.088	2.779	0.16443	0.59866
RegenerationR4	-1.838	2.779	0.02069	0.22809
RegenerationR5	0.047	2.779	0.93891	1.00000
RegenerationR6	-0.88	2.779	0.13680	0.45391
RegenerationBL	-2.064	2.779	0.01976	0.15183
RegenerationTP	0.132	2.779	0.87260	1.00000

Genes with expression patterns similar to MligTC455_50934

Nr.	Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Σ Spearman correlations	Int1	Int2	Int3	Reg1	Reg2	Reg3	Annotation
1.	MligTC455_50934	258	5.38	Mlig455_022555, Mlig455_025473	Neo: - Age: -	PREX1	6	1.000	1.000	1.000	1.000	1.000	1.000	Mlig455_022555 {REF} {Length: 1711} {Pfam: RhoGEF domain [PF00621.22, score=89.1]} {Human: ENSG00000124126, PREX1, phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 1, [Score=60.8, Expect=2e-09]; ENSG00000114346, ECT2, epithelial cell transforming 2, [Score=58.5, Expect=1e-08]} {Mouse: ENSMUSG00000039621, Prex1, phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1, [Score=57.8, Expect=2e-08]; ENSMUSG00000037946, Fgd3, FYVE, RhoGEF and PH domain containing 3, [Score=55.5, Expect=6e-08]} {Dmel: FBgn0035761, RhoGEF4, Rho guanine nucleotide exchange factor 4, [Score=52.4, Expect=4e-07]} {Celegans: WBGene00019832, osg-1, Rho guanine nucleotide exchange factor osg-1, [Score=50.1, Expect=2e-06]} {Smed: dd_Smed_v6_102989_0_1, dd_Smed_v6_102989_0_1, [Score=45.8, Expect=1e-06]} {RNA1509_45595} {RNA1310_28855} {RNA815_52523} Mlig455_025473 {REF} {Length: 1888} {Pfam: RhoGEF domain [PF00621.22, score=112.2]} {Human: ENSG00000124126, PREX1, phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 1, [Score=75.5, Expect=1e-13]} {Mouse: ENSMUSG00000071392, Ect2l, epithelial cell transforming sequence 2 oncogene-like, [Score=77.0, Expect=2e-14]; ENSMUSG00000039621, Prex1, phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1, [Score=73.2, Expect=4e-13]} {Dmel: FBgn0035761, RhoGEF4, Rho guanine nucleotide exchange factor 4, [Score=72.4, Expect=3e-13]} {Celegans: WBGene00006431, tag-52, Putative protein tag-52, [Score=62.8, Expect=3e-10]} {Smed: dd_Smed_v6_2922_0_1, dd_Smed_v6_2922_0_1, [Score=56.2, Expect=3e-08]} {RNA1310_28855} {RNA815_32615}
2.	MligTC455_18763	204	4.25	Mlig455_023704	Neo: - Age: - Region-enriched R6: 3.960/0.00001 Region-enriched R8: 3.900/0.02321	RASEF	2.576	0.916	-	0.956	0.704	-	-	Mlig455_023704 {REF} {Length: 2598} {Pfam: Ras family [PF00071.24, score=164.3]; Ras of Complex, Roc, domain of DAPkinase [PF08477.15, score=102.5]; ADP-ribosylation factor family [PF00025.23, score=59.0]; EF-hand domain pair [PF13499.8, score=47.9]; EF hand [PF00036.34, score=38.9]; EF-hand domain [PF13405.8, score=38.8]; 50S ribosome-binding GTPase [PF01926.25, score=37.4]; EF-hand domain pair [PF13833.8, score=32.3]; Elongation factor Tu GTP binding domain [PF00009.29, score=30.1]; EF hand [PF13202.8, score=24.9]; Gtr1/RagA G protein conserved region [PF04670.14, score=24.3]; RsgA GTPase [PF03193.18, score=22.2]} {Human: ENSG00000165105, RASEF, RAS and EF-hand domain containing, [Score=201, Expect=5e-55]} {Mouse: ENSMUSG00000043003, Rasef, RAS and EF hand domain containing, [Score=203, Expect=4e-57]} {Dmel: FBgn0086913, Rab26, [Score=144, Expect=3e-37]} {Celegans: WBGene00016344, rsef-1, Ras and EF-hand domain-containing protein homolog, [RH, Score=214, Expect=2e-60]} {Smed: dd_Smed_v6_4284_0_1, dd_Smed_v6_4284_0_1, [Score=209, Expect=8e-58]} {RNA1509_35225} {RNA1310_5487} {RNA815_12441}
3.	MligTC455_54178	434	9.04	Mlig455_020796	Neo: - Age: Down-Down-Up Region-enriched R7: 1.941/0.00397		1.783	-	-	-	-	0.829	0.954	Mlig455_020796 {REF} {Length: 2879} {Smed: dd_Smed_v6_5057_0_1, dd_Smed_v6_5057_0_1, [RH, Score=91.7, Expect=4e-20]} {RNA1509_10580} {RNA1310_9366, RNA1509_10580} {RNA1509_10580, RNA815_2566}
4.	MligTC455_24714	776	16.16	Mlig455_034613	Neo: - Age: Down-Up-Down		0.967	-	-	-	-	0.967	-	Mlig455_034613 {REF} {Length: 4206} {TRANSSPLICED} {RNA1509_23175, RNA1509_27911, RNA1509_28754, RNA1509_45584} {RNA1310_20001, RNA1509_27911, RNA1509_28754, RNA1509_45584} {RNA1509_27911, RNA1509_28754, RNA1509_45584, RNA815_11300}
5.	MligTC455_09916	99	2.06	Mlig455_041793	Neo: - Age: Up-Down-Up	SLC24A3	0.952	-	-	-	-	0.952	-	Mlig455_041793 {REF} {Length: 2836} {Pfam: Sodium/calcium exchanger protein [PF01699.26, score=164.2]} {Human: ENSG00000185052, SLC24A3, solute carrier family 24 member 3, [Score=273, Expect=3e-81]; ENSG00000140090, SLC24A4, solute carrier family 24 member 4, [Score=272, Expect=4e-81]; ENSG00000155886, SLC24A2, solute carrier family 24 member 2, [Score=266, Expect=1e-78]} {Mouse: ENSMUSG00000037996, Slc24a2, solute carrier family 24 (sodium/potassium/calcium exchanger), member 2, [Score=271, Expect=7e-80]; ENSMUSG00000063873, Slc24a3, solute carrier family 24 (sodium/potassium/calcium exchanger), member 3, [Score=268, Expect=5e-80]; ENSMUSG00000041771, Slc24a4, solute carrier family 24 (sodium/potassium/calcium exchanger), member 4, [Score=267, Expect=1e-79]} {Dmel: FBgn0028704, Nckx30C, [Score=256, Expect=1e-73]} {Celegans: WBGene00003569, ncx-4, Na/Ca eXchangers, [Score=143, Expect=9e-36]} {Smed: dd_Smed_v6_9736_0_1, dd_Smed_v6_9736_0_1, [Score=285, Expect=1e-86]} {RNA1310_23810} {RNA815_17580}
6.	MligTC455_50067	66	1.38	Mlig455_053514	Neo: - Age: logFC(26M/2M)=-0.733		0.951	-	-	0.951	-	-	-	Mlig455_053514 {REF} {Length: 2509} {RNA1509_46424} {RNA1310_8850} {RNA815_3382.1}
7.	MligTC455_50732	650	13.55	Mlig455_038869	Neo: - Age: - Region-enriched R7: 3.648/0.00002		0.951	-	-	-	0.951	-	-	Mlig455_038869 {REF} {Length: 922} {Dmel: FBgn0014024, Rnp4F, RNA-binding protein 4F, [Score=42.7, Expect=4e-06]} {RNA1509_37017} {RNA1310_48092.1, RNA1509_37017} {RNA1509_37017, RNA815_23660}