TomoSeq data search

Data search

Results for MligTC455_51166

Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Annotation
MligTC455_51166	247	5.14	Mlig455_002947	Neo: - Age: Up-Down-Down Region-enriched R2: 2.852/0.01808	UPF1	Mlig455_002947 {REF} {Length: 6709} {TRANSSPLICED} {Pfam: RNA dependent RNA polymerase [PF05183.14, score=349.2]; AAA domain [PF13086.8, score=48.0]; AAA domain [PF13087.8, score=25.7]} {Human: ENSG00000005007, UPF1, UPF1, RNA helicase and ATPase, [Score=87.8, Expect=2e-16]} {Mouse: ENSMUSG00000058301, Upf1, UPF1 regulator of nonsense transcripts homolog (yeast), [Score=88.6, Expect=6e-17]} {Dmel: FBgn0030354, Upf1, [Score=80.1, Expect=2e-14]} {Celegans: WBGene00004510, rrf-3, RNA-dependent RNA polymerase Family, [Score=180, Expect=5e-45]} {Smed: dd_Smed_v6_5185_0_1, dd_Smed_v6_5185_0_1, [Score=84.0, Expect=7e-16]} {RNA1509_13724} {RNA1310_1444} {RNA815_2820}

Cluster

Total UMI counts

Global CPM

Transcripts

Categories

Human homolog

Annotation

MligTC455_51166

247

5.14

Mlig455_002947

Neo: -

Age: Up-Down-Down

Region-enriched R2: 2.852/0.01808

UPF1

Mlig455_002947 {REF} {Length: 6709} {TRANSSPLICED} {Pfam: RNA dependent RNA polymerase [PF05183.14, score=349.2]; AAA domain [PF13086.8, score=48.0]; AAA domain [PF13087.8, score=25.7]} {Human: ENSG00000005007, UPF1, UPF1, RNA helicase and ATPase, [Score=87.8, Expect=2e-16]} {Mouse: ENSMUSG00000058301, Upf1, UPF1 regulator of nonsense transcripts homolog (yeast), [Score=88.6, Expect=6e-17]} {Dmel: FBgn0030354, Upf1, [Score=80.1, Expect=2e-14]} {Celegans: WBGene00004510, rrf-3, RNA-dependent RNA polymerase Family, [Score=180, Expect=5e-45]} {Smed: dd_Smed_v6_5185_0_1, dd_Smed_v6_5185_0_1, [Score=84.0, Expect=7e-16]} {RNA1509_13724} {RNA1310_1444} {RNA815_2820}

Cumulative graph for MligTC455_51166

Region-enriched expression

Region	logFC	logCPM	Pvalue	FDR
RegionR1	-7.835	2.916	0.02264	0.40709
RegionR2	2.852	2.916	0.00076	0.01808
RegionR3	1.319	2.916	0.12048	0.59981
RegionR4	-0.536	2.916	0.95962	1.00000
RegionR5	0.911	2.916	0.28867	0.61969
RegionR6	1.37	2.916	0.10838	0.60179
RegionR7	0.553	2.916	0.61067	1.00000
RegionR8	1.366	2.916	0.23029	0.84331

Regeneration-enriched expression

Region	logFC	logCPM	PValue	FDR
RegenerationR1	1.536	2.916	0.99981	1.00000
RegenerationR2	-0.479	2.916	0.38395	0.80411
RegenerationR3	0.434	2.916	0.49865	0.85699
RegenerationR4	0.966	2.916	0.14396	0.56895
RegenerationR5	0.779	2.916	0.18673	0.61744
RegenerationR6	0.056	2.916	0.92935	1.00000
RegenerationBL	0.273	2.916	0.73326	1.00000
RegenerationTP	0.497	2.916	0.56003	0.93888

Genes with expression patterns similar to MligTC455_51166

Nr.	Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Σ Spearman correlations	Int1	Int2	Int3	Reg1	Reg2	Reg3	Annotation
1.	MligTC455_51166	247	5.14	Mlig455_002947	Neo: - Age: Up-Down-Down Region-enriched R2: 2.852/0.01808	UPF1	6	1.000	1.000	1.000	1.000	1.000	1.000	Mlig455_002947 {REF} {Length: 6709} {TRANSSPLICED} {Pfam: RNA dependent RNA polymerase [PF05183.14, score=349.2]; AAA domain [PF13086.8, score=48.0]; AAA domain [PF13087.8, score=25.7]} {Human: ENSG00000005007, UPF1, UPF1, RNA helicase and ATPase, [Score=87.8, Expect=2e-16]} {Mouse: ENSMUSG00000058301, Upf1, UPF1 regulator of nonsense transcripts homolog (yeast), [Score=88.6, Expect=6e-17]} {Dmel: FBgn0030354, Upf1, [Score=80.1, Expect=2e-14]} {Celegans: WBGene00004510, rrf-3, RNA-dependent RNA polymerase Family, [Score=180, Expect=5e-45]} {Smed: dd_Smed_v6_5185_0_1, dd_Smed_v6_5185_0_1, [Score=84.0, Expect=7e-16]} {RNA1509_13724} {RNA1310_1444} {RNA815_2820}
2.	MligTC455_53587	775	16.15	Mlig455_012888	Neo: - Age: -	NR1I3	0.968	-	-	-	-	-	0.968	Mlig455_012888 {REF} {Length: 4025} {TRANSSPLICED} {Pfam: Zinc finger, C4 type (two domains) [PF00105.20, score=70.2]} {Human: ENSG00000143257, NR1I3, nuclear receptor subfamily 1 group I member 3, [Score=103, Expect=2e-23]} {Mouse: ENSMUSG00000022479, Vdr, vitamin D (1,25-dihydroxyvitamin D3) receptor, [Score=97.1, Expect=4e-21]; ENSMUSG00000005677, Nr1i3, nuclear receptor subfamily 1, group I, member 3, [Score=96.7, Expect=2e-21]; ENSMUSG00000022809, Nr1i2, nuclear receptor subfamily 1, group I, member 2, [Score=92.8, Expect=1e-19]} {Dmel: FBgn0015240, Hr96, Hormone receptor-like in 96, [Score=95.1, Expect=3e-20]} {Celegans: WBGene00000908, daf-12, Nuclear hormone receptor family member daf-12, [Score=95.5, Expect=2e-20]} {Smed: dd_Smed_v6_5200_0_1, dd_Smed_v6_5200_0_1, [Score=291, Expect=4e-92]} {RNA1509_12732} {RNA1310_15673.1, RNA1509_12732} {RNA1509_12732, RNA815_1809.1}
3.	MligTC455_15803	191	3.98	Mlig455_039323	Neo: - Age: -	RGS12	0.965	-	-	-	-	-	0.965	Mlig455_039323 {REF} {Length: 3633} {TRANSSPLICED} {Pfam: Regulator of G protein signaling domain [PF00615.21, score=106.4]; PDZ domain [PF00595.26, score=54.0]; PDZ domain [PF17820.3, score=47.7]; Raf-like Ras-binding domain [PF02196.17, score=45.1]; PDZ domain [PF13180.8, score=21.4]} {Human: ENSG00000159788, RGS12, regulator of G protein signaling 12, [RH, Score=183, Expect=2e-47]} {Mouse: ENSMUSG00000029101, Rgs12, regulator of G-protein signaling 12, [RH, Score=186, Expect=3e-48]} {Dmel: FBgn0020278, loco, locomotion defects, [Score=147, Expect=6e-36]} {Celegans: WBGene00004345, rgs-2, Regulator of G-protein signaling rgs-2, [Score=99.4, Expect=6e-24]} {Smed: dd_Smed_v6_8463_0_2, dd_Smed_v6_8463_0_2, [Score=105, Expect=2e-24]} {RNA1509_57496} {RNA1310_5606} {RNA815_31965}

Nr.

Cluster

Total UMI counts

Global CPM

Transcripts

Categories

Human homolog

Σ Spearman correlations

Int1

Int2

Int3

Reg1

Reg2

Reg3

Annotation

MligTC455_51166

247

5.14

Mlig455_002947

Neo: -

Age: Up-Down-Down

Region-enriched R2: 2.852/0.01808

UPF1

1.000

MligTC455_53587

775

16.15

Mlig455_012888

Neo: -

Age: -

NR1I3

0.968

Mlig455_012888 {REF} {Length: 4025} {TRANSSPLICED} {Pfam: Zinc finger, C4 type (two domains) [PF00105.20, score=70.2]} {Human: ENSG00000143257, NR1I3, nuclear receptor subfamily 1 group I member 3, [Score=103, Expect=2e-23]} {Mouse: ENSMUSG00000022479, Vdr, vitamin D (1,25-dihydroxyvitamin D3) receptor, [Score=97.1, Expect=4e-21]; ENSMUSG00000005677, Nr1i3, nuclear receptor subfamily 1, group I, member 3, [Score=96.7, Expect=2e-21]; ENSMUSG00000022809, Nr1i2, nuclear receptor subfamily 1, group I, member 2, [Score=92.8, Expect=1e-19]} {Dmel: FBgn0015240, Hr96, Hormone receptor-like in 96, [Score=95.1, Expect=3e-20]} {Celegans: WBGene00000908, daf-12, Nuclear hormone receptor family member daf-12, [Score=95.5, Expect=2e-20]} {Smed: dd_Smed_v6_5200_0_1, dd_Smed_v6_5200_0_1, [Score=291, Expect=4e-92]} {RNA1509_12732} {RNA1310_15673.1, RNA1509_12732} {RNA1509_12732, RNA815_1809.1}

MligTC455_15803

191

3.98

Mlig455_039323

Neo: -

Age: -

RGS12

0.965

Mlig455_039323 {REF} {Length: 3633} {TRANSSPLICED} {Pfam: Regulator of G protein signaling domain [PF00615.21, score=106.4]; PDZ domain [PF00595.26, score=54.0]; PDZ domain [PF17820.3, score=47.7]; Raf-like Ras-binding domain [PF02196.17, score=45.1]; PDZ domain [PF13180.8, score=21.4]} {Human: ENSG00000159788, RGS12, regulator of G protein signaling 12, [RH, Score=183, Expect=2e-47]} {Mouse: ENSMUSG00000029101, Rgs12, regulator of G-protein signaling 12, [RH, Score=186, Expect=3e-48]} {Dmel: FBgn0020278, loco, locomotion defects, [Score=147, Expect=6e-36]} {Celegans: WBGene00004345, rgs-2, Regulator of G-protein signaling rgs-2, [Score=99.4, Expect=6e-24]} {Smed: dd_Smed_v6_8463_0_2, dd_Smed_v6_8463_0_2, [Score=105, Expect=2e-24]} {RNA1509_57496} {RNA1310_5606} {RNA815_31965}