M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_51230

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_51230 3357 69.94 Mlig455_021132

Neo: -

Age: Down-Up-Up, logFC(26M/2M)=0.674

 Mlig455_021132 {REF} {Length: 1214} {RNA1509_43926, RNA1509_51817} {RNA1310_39956.1, RNA1509_51817} {RNA1509_51817, RNA815_20485}

Cumulative graph for MligTC455_51230

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -0.844 6.205 0.32279 0.97242
RegionR2 0.27 6.205 0.63773 0.97635
RegionR3 -0.127 6.205 0.80332 1.00000
RegionR4 0.074 6.205 0.89611 1.00000
RegionR5 -0.78 6.205 0.13729 0.38000
RegionR6 0.692 6.205 0.14884 0.68778
RegionR7 0.149 6.205 0.76977 1.00000
RegionR8 0.566 6.205 0.28557 0.91294

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -0.693 6.205 0.52371 1.00000
RegenerationR2 0.772 6.205 0.20801 0.65595
RegenerationR3 0.334 6.205 0.59404 0.90538
RegenerationR4 0.381 6.205 0.54861 0.89212
RegenerationR5 0.932 6.205 0.13927 0.55118
RegenerationR6 -0.173 6.205 0.78579 0.97034
RegenerationBL -0.301 6.205 0.58668 0.93718
RegenerationTP -0.186 6.205 0.75229 1.00000


Genes with expression patterns similar to MligTC455_51230

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_51230 3357 69.94 Mlig455_021132

Neo: -

Age: Down-Up-Up, logFC(26M/2M)=0.674

 6 1.000 1.000 1.000 1.000 1.000 1.000 Mlig455_021132 {REF} {Length: 1214} {RNA1509_43926, RNA1509_51817} {RNA1310_39956.1, RNA1509_51817} {RNA1509_51817, RNA815_20485}
2. MligTC455_20440 7716 160.76 Mlig455_034502

Neo: -

Age: Down-Up-Down, logFC(26M/2M)=-0.410

 TSPAN16 3.98 - 0.731 0.799 0.951 0.735 0.764 Mlig455_034502 {REF} {Length: 1176} {Pfam: Tetraspanin family [PF00335.22, score=77.6]} {Human: ENSG00000130167, TSPAN16, tetraspanin 16, [Score=49.3, Expect=2e-06]} {Mouse: ENSMUSG00000067377, Tspan6, tetraspanin 6, [Score=48.1, Expect=4e-06]} {Dmel: FBgn0035936, Tsp66E, Tetraspanin 66E, [Score=67.0, Expect=1e-12]} {Smed: dd_Smed_v6_3175_0_1, dd_Smed_v6_3175_0_1, [RH, Score=105, Expect=2e-26]} {RNA1509_1984, RNA1509_52808} {RNA1310_20011, RNA1509_52808} {RNA1509_52808, RNA815_7057.1}
3. MligTC455_48561 779 16.24 Mlig455_034702, Mlig455_034755

Neo: -

Age: -

 FABP4 2.487 - - 0.722 0.803 - 0.962

Mlig455_034702 {REF} {Length: 723} {Human: ENSG00000170323, FABP4, fatty acid binding protein 4, [Score=43.9, Expect=8e-06]} {RNA1509_39777} {RNA1310_54956} {RNA815_27929.1}

Mlig455_034755 {REF} {Length: 924} {Human: ENSG00000170323, FABP4, fatty acid binding protein 4, [Score=43.9, Expect=8e-06]} {RNA1509_39777} {RNA1310_54956, RNA1509_39777} {RNA1509_39777, RNA815_27929.1}
4. MligTC455_42646 265 5.53 Mlig455_046692

Neo: -

Age: -

Region-enriched R2: 2.509/0.02015

 KRT8 0.968 - - - - - 0.968 Mlig455_046692 {REF} {Length: 3581} {TRANSSPLICED} {Pfam: Intermediate filament protein [PF00038.23, score=144.4]; Protein of unknown function (DUF3450) [PF11932.10, score=22.6]; BRE1 E3 ubiquitin ligase [PF08647.13, score=19.7]; Bacillus haemolytic enterotoxin (HBL) [PF05791.13, score=18.9]; Afadin- and alpha -actinin-Binding [PF11559.10, score=18.7]; Crescentin protein [PF19220.2, score=18.6]} {Human: ENSG00000170421, KRT8, keratin 8, [RH, Score=111, Expect=2e-25]} {Mouse: ENSMUSG00000063661, Krt73, keratin 73, [RH, Score=107, Expect=3e-24]} {Dmel: FBgn0010397, LamC, Lamin C, [Score=140, Expect=4e-35]} {Celegans: WBGene00002050, ifa-1, Intermediate filament protein ifa-1, [Score=251, Expect=7e-76]} {Smed: dd_Smed_v6_3871_0_1, dd_Smed_v6_3871_0_1, [Score=275, Expect=4e-85]} {RNA1310_10400} {RNA815_12264}
5. MligTC455_02375 31 0.64 Mlig455_023809

Neo: -

Age: -

 0.967 - - - - - 0.967 Mlig455_023809 {REF} {Length: 555} {Pfam: RNase H [PF00075.26, score=28.7]} {RNA1310_49685}
6. MligTC455_36009 420 8.74 Mlig455_055465

Neo: -

Age: -

 EPB41L3 0.956 - - - - 0.956 - Mlig455_055465 {REF} {Length: 6945} {TRANSSPLICED} {Pfam: FERM C-terminal PH-like domain [PF09380.12, score=64.5]; FERM central domain [PF00373.20, score=30.9]} {Human: ENSG00000082397, EPB41L3, erythrocyte membrane protein band 4.1 like 3, [Score=182, Expect=8e-50]; ENSG00000088367, EPB41L1, erythrocyte membrane protein band 4.1 like 1, [Score=175, Expect=6e-48]} {Mouse: ENSMUSG00000024044, Epb41l3, erythrocyte membrane protein band 4.1 like 3, [Score=182, Expect=3e-50]; ENSMUSG00000027624, Epb41l1, erythrocyte membrane protein band 4.1 like 1, [Score=176, Expect=4e-48]; ENSMUSG00000019978, Epb41l2, erythrocyte membrane protein band 4.1 like 2, [Score=173, Expect=9e-47]} {Dmel: FBgn0010434, cora, coracle, [Score=171, Expect=1e-46]} {Celegans: WBGene00001490, frm-3, FERM domain (Protein4.1-ezrin-radixin-moesin) family, [Score=109, Expect=2e-25]} {Smed: dd_Smed_v6_1613_0_1, dd_Smed_v6_1613_0_1, [Score=157, Expect=2e-41]} {RNA1509_6972} {RNA1310_8636} {RNA815_8378}
7. MligTC455_36008 404 8.41 Mlig455_055395

Neo: -

Age: logFC(26M/2M)=0.738

 0.954 - - - - 0.954 - Mlig455_055395 {REF} {Length: 2036} {RNA1509_14528} {RNA1310_31437} {RNA815_14226}
8. MligTC455_34655 89 1.86 Mlig455_058020, Mlig455_058176

Neo: -

Age: -

Region-enriched R2: 5.798/0.00826

 PPEF1 0.951 - - - - - 0.951

Mlig455_058020 {REF} {Length: 3007} {Pfam: Calcineurin-like phosphoesterase [PF00149.30, score=84.9]; EF-hand domain pair [PF13499.8, score=77.8]; EF hand [PF00036.34, score=66.0]; EF-hand domain pair [PF13833.8, score=52.1]; EF-hand domain [PF13405.8, score=48.4]; EF hand [PF13202.8, score=38.2]; PPP5 TPR repeat region [PF08321.14, score=37.0]; EF-hand domain [PF14658.8, score=23.0]; Cytoskeletal-regulatory complex EF hand [PF12763.9, score=20.4]} {Human: ENSG00000086717, PPEF1, protein phosphatase with EF-hand domain 1, [Score=416, Expect=2e-138]} {Mouse: ENSMUSG00000062168, Ppef1, protein phosphatase with EF hand calcium-binding domain 1, [Score=413, Expect=9e-138]} {Dmel: FBgn0265959, rdgC, retinal degeneration C, [Score=404, Expect=3e-134]} {Celegans: WBGene00003969, pef-1, Serine/threonine-protein phosphatase with EF-hands pef-1, [Score=455, Expect=2e-155]} {Smed: dd_Smed_v6_11874_0_2, dd_Smed_v6_11874_0_2, [Score=516, Expect=2e-178]} {RNA1509_3508} {RNA1310_10928.2} {RNA815_11707}

Mlig455_058176 {REF} {Length: 3371} {Pfam: Calcineurin-like phosphoesterase [PF00149.30, score=102.6]; EF-hand domain pair [PF13499.8, score=72.6]; EF hand [PF00036.34, score=64.2]; EF-hand domain pair [PF13833.8, score=51.3]; EF-hand domain [PF13405.8, score=46.1]; EF hand [PF13202.8, score=36.7]; PPP5 TPR repeat region [PF08321.14, score=36.6]; EF-hand domain [PF14658.8, score=26.5]; IQ calmodulin-binding motif [PF00612.29, score=21.3]; Cytoskeletal-regulatory complex EF hand [PF12763.9, score=19.8]} {Human: ENSG00000086717, PPEF1, protein phosphatase with EF-hand domain 1, [RH, Score=546, Expect=0.0]} {Mouse: ENSMUSG00000062168, Ppef1, protein phosphatase with EF hand calcium-binding domain 1, [Score=520, Expect=3e-177]} {Dmel: FBgn0265959, rdgC, retinal degeneration C, [Score=529, Expect=2e-180]} {Celegans: WBGene00003969, pef-1, Serine/threonine-protein phosphatase with EF-hands pef-1, [Score=598, Expect=0.0]} {Smed: dd_Smed_v6_11874_0_1, dd_Smed_v6_11874_0_1, [Score=671, Expect=0.0]} {RNA1509_3508} {RNA1310_10928.2} {RNA815_11707}
9. MligTC455_54517 38 0.78 Mlig455_049988

Neo: -

Age: -

 0.95 - - - - - 0.950 Mlig455_049988 {REF} {Length: 738} {NoTransDecoderORF} {RNA1509_57004} {RNA1310_13614.1} {RNA815_15623}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA