TomoSeq data search

Data search

Results for MligTC455_51267

Cluster

Total UMI counts

Global CPM

Transcripts

Categories

Human homolog

Annotation

MligTC455_51267

47

0.99

Mlig455_029381

Neo: -

Age: Down-Up-Down

Mlig455_029381 {REF} {Length: 2035} {TRANSSPLICED} {RNA1509_47091} {RNA1310_34479} {RNA815_9578.1}

Cumulative graph for MligTC455_51267

Region-enriched expression

Region	logFC	logCPM	Pvalue	FDR	Specificity
RegionR1	-4.569	1.352	1.00000	1.00000
RegionR2	2.631	1.352	0.08841	0.36519
RegionR3	1.278	1.352	0.33412	0.87195
RegionR4	-0.927	1.352	0.92693	1.00000
RegionR5	-0.054	1.352	0.79430	1.00000
RegionR6	0.835	1.352	0.52027	1.00000
RegionR7	3.38	1.352	0.01516	0.22267
RegionR8	-2.574	1.352	1.00000	1.00000

Regeneration-enriched expression

Region	logFC	logCPM	PValue	FDR	Specificity
RegenerationR1	1.294	1.352	1.00000	1.00000
RegenerationR2	0.712	1.352	0.45541	0.85018
RegenerationR3	0.838	1.352	0.47668	0.84772
RegenerationR4	0.566	1.352	0.67044	0.94265
RegenerationR5	0.817	1.352	0.46779	0.84096
RegenerationR6	0.246	1.352	0.85661	1.00000
RegenerationBL	-3.161	1.352	1.00000	1.00000
RegenerationTP	1.985	1.352	0.37654	0.81267

Genes with expression patterns similar to MligTC455_51267

Nr.	Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Σ Spearman correlations	Int1	Int2	Int3	Reg1	Reg2	Reg3	Annotation
1.	MligTC455_51267	47	0.99	Mlig455_029381	Neo: - Age: Down-Up-Down		5	1.000	-	1.000	1.000	1.000	1.000	Mlig455_029381 {REF} {Length: 2035} {TRANSSPLICED} {RNA1509_47091} {RNA1310_34479} {RNA815_9578.1}
2.	MligTC455_30130	62	1.29	Mlig455_040669, Mlig455_068784, Mlig455_068802	Neo: Irradiation Age: Up-Down-Down		1.775	0.950	-	-	-	-	0.825	Mlig455_040669 {REF} {Length: 3166} {TRANSSPLICED} {RNA1509_20007} {RNA1310_780.1} {RNA815_353.1} Mlig455_068784 {REF} {Length: 3176} {TRANSSPLICED} {RNA1509_20007} {RNA1310_780.1, RNA1509_20007} {RNA1509_20007, RNA815_353.1} Mlig455_068802 {REF} {Length: 3206} {TRANSSPLICED} {RNA1509_20007} {RNA1310_780.1} {RNA815_353.1}
3.	MligTC455_13611	55	1.14	Mlig455_005961, Mlig455_005966	Neo: - Age: Down-Down-Up		0.998	-	-	0.998	-	-	-	Mlig455_005961 {REF} {Length: 2509} {Pfam: NPH3 family [PF03000.16, score=49.4]; BTB/POZ domain [PF00651.33, score=25.3]} {Smed: dd_Smed_v6_8081_0_1, dd_Smed_v6_8081_0_1, [Score=165, Expect=2e-43]} {RNA1310_11638} {RNA815_12936} Mlig455_005966 {REF} {Length: 927} {RNA1509_27849} {RNA1310_5087} {RNA815_12936}
4.	MligTC455_16817	24	0.49	Mlig455_005563	Neo: - Age: Down-Up-Down	TNR	0.996	-	-	0.996	-	-	-	Mlig455_005563 {REF} {Length: 1503} {Pfam: Fibrinogen beta and gamma chains, C-terminal globular domain [PF00147.20, score=140.4]} {Human: ENSG00000116147, TNR, tenascin R, [Score=111, Expect=7e-27]; ENSG00000085265, FCN1, ficolin 1, [Score=107, Expect=1e-26]; ENSG00000142748, FCN3, ficolin 3, [Score=106, Expect=2e-26]} {Mouse: ENSMUSG00000015829, Tnr, tenascin R, [Score=113, Expect=1e-27]; ENSMUSG00000026725, Tnn, tenascin N, [Score=112, Expect=3e-27]; ENSMUSG00000026835, Fcnb, ficolin B, [Score=112, Expect=1e-28]} {Dmel: FBgn0034160, CG5550, [Score=80.9, Expect=1e-17]} {Celegans: WBGene00020516, T15B7.1, [Score=55.5, Expect=1e-08]} {Smed: dd_Smed_v6_18326_0_1, dd_Smed_v6_18326_0_1, [Score=84.3, Expect=4e-18]} {RNA1310_33047} {RNA815_49193}
5.	MligTC455_16079	136	2.84	Mlig455_042498	Neo: - Age: logFC(26M/2M)=0.797		0.991	-	-	0.991	-	-	-	Mlig455_042498 {REF} {Length: 2366} {RNA1509_55486} {RNA1310_26714.2, RNA1509_55486} {RNA1509_55486, RNA815_22393}
6.	MligTC455_10104	12	0.25	Mlig455_001753	Neo: - Age: -		0.988	-	-	0.988	-	-	-	Mlig455_001753 {REF} {Length: 477} {NoTransDecoderORF} {RNA1310_58661} {RNA815_42046}
7.	MligTC455_49506	29	0.6	Mlig455_054978	Neo: - Age: Up-Down-Down	EGR1	0.983	-	-	-	-	-	0.983	Mlig455_054978 {REF} {Length: 2310} {TRANSSPLICED} {Pfam: Zinc finger, C2H2 type [PF00096.28, score=53.0]; Zinc-finger double domain [PF13465.8, score=45.5]; C2H2-type zinc finger [PF13894.8, score=40.2]; C2H2-type zinc finger [PF13912.8, score=23.5]} {Human: ENSG00000120738, EGR1, early growth response 1, [Score=90.1, Expect=5e-20]; ENSG00000124613, ZNF391, zinc finger protein 391, [Score=89.0, Expect=6e-20]; ENSG00000272602, ZNF595, zinc finger protein 595, [Score=88.6, Expect=2e-19]; ENSG00000131845, ZNF304, zinc finger protein 304, [Score=88.6, Expect=2e-19]; ENSG00000179388, EGR3, early growth response 3, [Score=87.4, Expect=3e-19]; ENSG00000188283, ZNF383, zinc finger protein 383, [Score=87.0, Expect=5e-19]; ENSG00000197608, ZNF841, zinc finger protein 841, [Score=87.0, Expect=6e-19]; ENSG00000197050, ZNF420, zinc finger protein 420, [Score=87.0, Expect=6e-19]; ENSG00000235109, ZSCAN31, zinc finger and SCAN domain containing 31, [Score=86.7, Expect=5e-19]; ENSG00000170631, ZNF16, zinc finger protein 16, [Score=86.7, Expect=1e-18]; ENSG00000122877, EGR2, early growth response 2, [Score=86.3, Expect=9e-19]; ENSG00000196172, ZNF681, zinc finger protein 681, [Score=86.3, Expect=1e-18]; ENSG00000167384, ZNF180, zinc finger protein 180, [Score=86.3, Expect=1e-18]} {Mouse: ENSMUSG00000078861, Zfp931, zinc finger protein 931, [Score=92.0, Expect=2e-21]; ENSMUSG00000078877, Gm14295, predicted gene 14295, [Score=91.7, Expect=1e-20]; ENSMUSG00000078875, Gm14419, predicted gene 14419, [Score=91.3, Expect=1e-20]; ENSMUSG00000095648, Gm2004, predicted gene 2004, [Score=91.3, Expect=1e-20]; ENSMUSG00000078868, Gm14412, predicted gene 14412, [Score=90.9, Expect=2e-20]; ENSMUSG00000038418, Egr1, early growth response 1, [Score=90.1, Expect=3e-20]; ENSMUSG00000078869, Gm14409, predicted gene 14409, [Score=88.2, Expect=7e-20]; ENSMUSG00000078872, Gm14401, predicted gene 14401, [Score=88.2, Expect=4e-20]} {Dmel: FBgn0013469, klu, klumpfuss, [Score=113, Expect=3e-28]} {Celegans: WBGene00013970, klu-1, KLUmpfuss related, [Score=109, Expect=4e-27]} {Smed: dd_Smed_v6_16277_0_1, dd_Smed_v6_16277_0_1, [Score=112, Expect=4e-29]} {RNA1310_32154} {RNA815_27227}
8.	MligTC455_31204	16	0.33	Mlig455_005908	Neo: - Age: -		0.978	-	-	0.978	-	-	-	Mlig455_005908 {REF} {Length: 523} {NoTransDecoderORF} {RNA1310_121136} {RNA815_54362}
9.	MligTC455_53129	224	4.66	Mlig455_002408, Mlig455_057628	Neo: - Age: Down-Down-Up, logFC(26M/2M)=4.948	REG1A	0.978	-	-	0.978	-	-	-	Mlig455_002408 {REF} {Length: 1777} {Pfam: Lectin C-type domain [PF00059.23, score=40.5]; UL45 protein, carbohydrate-binding C-type lectin-like [PF05473.14, score=24.1]} {Human: ENSG00000115386, REG1A, regenerating family member 1 alpha, [Score=57.4, Expect=5e-10]} {Mouse: ENSMUSG00000023140, Reg2, regenerating islet-derived 2, [Score=52.0, Expect=3e-08]} {RNA1509_7169} {RNA1310_18329} {RNA815_9235} Mlig455_057628 {REF} {Length: 1695} {Pfam: Lectin C-type domain [PF00059.23, score=65.0]; UL45 protein, carbohydrate-binding C-type lectin-like [PF05473.14, score=24.5]} {Human: ENSG00000115386, REG1A, regenerating family member 1 alpha, [Score=57.0, Expect=3e-09]} {Mouse: ENSMUSG00000023140, Reg2, regenerating islet-derived 2, [Score=51.6, Expect=1e-07]} {RNA1509_7169} {RNA1310_18329} {RNA815_9235}
10.	MligTC455_52340	34	0.71	Mlig455_012358, Mlig455_012736	Neo: - Age: Up-Down-Up	SCNN1B	0.962	-	-	0.962	-	-	-	Mlig455_012358 {REF} {Length: 3412} {Pfam: Amiloride-sensitive sodium channel [PF00858.26, score=180.9]} {Human: ENSG00000168447, SCNN1B, sodium channel epithelial 1 beta subunit, [Score=58.9, Expect=2e-08]} {Celegans: WBGene00009073, delm-1, DEgenerin Linked to Mechanosensation, [Score=55.8, Expect=7e-08]} {Smed: dd_Smed_v6_16274_0_1, dd_Smed_v6_16274_0_1, [Score=404, Expect=3e-133]} {RNA1310_40062.1} {RNA815_16192} Mlig455_012736 {REF} {Length: 3026} {Pfam: Amiloride-sensitive sodium channel [PF00858.26, score=180.6]} {Human: ENSG00000168447, SCNN1B, sodium channel epithelial 1 beta subunit, [Score=58.9, Expect=2e-08]} {Celegans: WBGene00009073, delm-1, DEgenerin Linked to Mechanosensation, [Score=55.8, Expect=7e-08]} {Smed: dd_Smed_v6_16274_0_1, dd_Smed_v6_16274_0_1, [Score=405, Expect=2e-133]} {RNA1310_40062.1} {RNA815_16192}
11.	MligTC455_12128	236	4.91	Mlig455_022096, Mlig455_053634	Neo: - Age: - Region-enriched R5: 2.162/0.01635		0.958	-	-	0.958	-	-	-	Mlig455_022096 {REF} {Length: 2464} {TRANSSPLICED} {Pfam: F-box-like [PF12937.9, score=21.8]; F-box domain [PF00646.35, score=21.6]} {RNA1509_24923} {RNA1310_14282} {RNA815_5392} Mlig455_053634 {REF} {Length: 2470} {TRANSSPLICED} {Pfam: F-box-like [PF12937.9, score=21.8]; F-box domain [PF00646.35, score=21.6]} {RNA1509_24923} {RNA1310_14282, RNA1509_24923} {RNA1509_24923, RNA815_5392}
12.	MligTC455_22290	183	3.81	Mlig455_040348, Mlig455_052968	Neo: - Age: -		0.957	-	-	-	-	0.957	-	Mlig455_040348 {REF} {Length: 4187} {NoTransDecoderORF} {RNA1509_42337} {RNA1310_42816} {RNA815_26632} Mlig455_052968 {REF} {Length: 105} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_42337} {RNA1310_27723} {RNA815_11170.1}
13.	MligTC455_48860	266	5.54	Mlig455_053885, Mlig455_055410	Neo: - Age: Down-Up-Down		0.957	-	-	-	-	0.957	-	Mlig455_053885 {REF} {Length: 2736} {Pfam: Fes/CIP4, and EFC/F-BAR homology domain [PF00611.25, score=40.8]; SH3 domain [PF00018.30, score=20.7]} {Smed: dd_Smed_v6_834_0_1, dd_Smed_v6_834_0_1, [Score=57.0, Expect=1e-08]} {RNA1509_11823} {RNA1310_16283, RNA1509_11823} {RNA1509_11823, RNA815_6206.1} Mlig455_055410 {REF} {Length: 2712} {Pfam: Fes/CIP4, and EFC/F-BAR homology domain [PF00611.25, score=40.8]; SH3 domain [PF00018.30, score=20.1]; Autophagy protein 16 (ATG16) [PF08614.13, score=20.0]} {Smed: dd_Smed_v6_834_0_1, dd_Smed_v6_834_0_1, [Score=56.6, Expect=2e-08]} {RNA1509_54914} {RNA1310_16283, RNA1509_54914} {RNA1509_54914, RNA815_6206.1}
14.	MligTC455_45095	685	14.28	Mlig455_027545	Neo: - Age: Down-Up-Up Region-enriched R8: 2.453/0.00108 Region-enriched R2: 2.319/0.00368 Regeneration-downregulated BL: -7.982 Regeneration-depleted BL: -7.982		0.953	-	-	-	-	0.953	-	Mlig455_027545 {REF} {Length: 449} {RNA1509_40580} {RNA1310_73550} {RNA815_38029}
15.	MligTC455_51994	31	0.64	Mlig455_050852	Neo: - Age: -		0.952	0.952	-	-	-	-	-	Mlig455_050852 {REF} {Length: 1722} {Smed: dd_Smed_v6_14508_0_1, dd_Smed_v6_14508_0_1, [Score=64.3, Expect=3e-12]} {RNA1509_41080} {RNA1310_48966} {RNA815_1736.1}

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