M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_51295

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_51295 179 3.72 Mlig455_020481

Neo: -

Age: -

 Mlig455_020481 {REF} {Length: 2318} {TRANSSPLICED} {RNA1310_28891} {RNA815_46584}

Cumulative graph for MligTC455_51295

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -5.23 2.508 0.24808 0.89443
RegionR2 0.754 2.508 0.46377 0.85060
RegionR3 0.632 2.508 0.49468 0.99138
RegionR4 0.129 2.508 0.80977 1.00000
RegionR5 0.702 2.508 0.42645 0.78638
RegionR6 0.207 2.508 0.76840 1.00000
RegionR7 1.466 2.508 0.13776 0.69562
RegionR8 1.341 2.508 0.27322 0.89639

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 5.653 2.508 0.25100 0.96682
RegenerationR2 -0.732 2.508 0.18859 0.63207
RegenerationR3 0.225 2.508 0.70977 0.95139
RegenerationR4 -0.35 2.508 0.60468 0.91512
RegenerationR5 0.8 2.508 0.12232 0.52336
RegenerationR6 0.088 2.508 0.89644 1.00000
RegenerationBL -0.652 2.508 0.44571 0.81292
RegenerationTP -0.405 2.508 0.62542 0.97474


Genes with expression patterns similar to MligTC455_51295

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_51295 179 3.72 Mlig455_020481

Neo: -

Age: -

 6 1.000 1.000 1.000 1.000 1.000 1.000 Mlig455_020481 {REF} {Length: 2318} {TRANSSPLICED} {RNA1310_28891} {RNA815_46584}
2. MligTC455_37744 102 2.13 Mlig455_060048

Neo: -

Age: Down-Up-Up, logFC(26M/2M)=1.195

Region-enriched R4: 3.222/0.03182

 1.695 - - 0.741 - - 0.954 Mlig455_060048 {REF} {Length: 3100} {RNA1509_20857} {RNA1310_14135} {RNA815_7399.1}
3. MligTC455_20683 234 4.87 Mlig455_002576, Mlig455_057895

Neo: -

Age: -

 EXT2 0.979 - - - - 0.979 -

Mlig455_002576 {REF} {Length: 2511} {TRANSSPLICED} {Pfam: Glycosyl transferase family 64 domain [PF09258.12, score=113.4]; Exostosin family [PF03016.17, score=99.1]} {Human: ENSG00000151348, EXT2, exostosin glycosyltransferase 2, [RH, Score=320, Expect=3e-98]} {Mouse: ENSMUSG00000027198, Ext2, exostoses (multiple) 2, [RH, Score=325, Expect=2e-100]} {Dmel: FBgn0029175, Ext2, [RH, Score=261, Expect=8e-77]} {Celegans: WBGene00004361, rib-2, Exostosin-2 homolog, [Score=125, Expect=1e-29]} {Smed: dd_Smed_v6_11944_0_3, dd_Smed_v6_11944_0_3, [Score=113, Expect=2e-26]} {RNA1509_34566, RNA1509_53908} {RNA1310_9797, RNA1509_34566, RNA1509_53908} {RNA1509_34566, RNA1509_53908, RNA815_3327}

Mlig455_057895 {REF} {Length: 2388} {TRANSSPLICED} {Pfam: Glycosyl transferase family 64 domain [PF09258.12, score=111.4]; Exostosin family [PF03016.17, score=94.6]} {Human: ENSG00000151348, EXT2, exostosin glycosyltransferase 2, [RH, Score=318, Expect=1e-97]} {Mouse: ENSMUSG00000027198, Ext2, exostoses (multiple) 2, [RH, Score=323, Expect=1e-99]} {Dmel: FBgn0029175, Ext2, [RH, Score=263, Expect=1e-77]} {Celegans: WBGene00004361, rib-2, Exostosin-2 homolog, [Score=124, Expect=3e-29]} {Smed: dd_Smed_v6_11944_0_3, dd_Smed_v6_11944_0_3, [Score=109, Expect=3e-25]} {RNA1509_53908} {RNA1310_9797} {RNA815_3327}
4. MligTC455_51855 73 1.52 Mlig455_045651

Neo: -

Age: Up-Up-Down

Region-enriched R4: 3.953/0.00972
Region-enriched R5: 2.666/0.01710

 0.979 - - - - - 0.979 Mlig455_045651 {REF} {Length: 976} {NoTransDecoderORF} {RNA1509_57695} {RNA1310_42783} {RNA815_21212}
5. MligTC455_37945 128 2.66 Mlig455_050331

Neo: -

Age: Down-Up-Down

 0.967 - - - - - 0.967 Mlig455_050331 {REF} {Length: 4704} {TRANSSPLICED} {RNA1509_35022, RNA1509_59283} {RNA1310_6390.1, RNA1509_35022, RNA1509_59283} {RNA1509_35022, RNA1509_59283, RNA815_7453}
6. MligTC455_32124 332 6.91 Mlig455_016428

Neo: -

Age: -

 0.963 - - 0.963 - - - Mlig455_016428 {REF} {Length: 4611} {RNA1509_33226, RNA1509_35332} {RNA1310_5669.1, RNA1509_33226, RNA1509_35332} {RNA1509_33226, RNA1509_35332, RNA815_13512}
7. MligTC455_52945 209 4.36 Mlig455_049748, Mlig455_052857

Neo: -

Age: -

 0.955 - - - - - 0.955

Mlig455_049748 {REF} {Length: 1155} {TRANSSPLICED} {Pfam: RecQ-mediated genome instability protein 2 [PF16100.7, score=60.4]} {RNA1310_51640} {RNA815_38291}

Mlig455_052857 {REF} {Length: 1937} {TRANSSPLICED} {Pfam: RecQ-mediated genome instability protein 2 [PF16100.7, score=60.6]} {RNA1310_51640} {RNA815_38291}
8. MligTC455_48841 1027 21.4 Mlig455_011191, Mlig455_011220, Mlig455_024752

Neo: -

Age: Up-Down-Up, logFC(26M/2M)=0.739

 RPF1 0.954 - - - - - 0.954

Mlig455_011191 {REF} {Length: 5251} {TRANSSPLICED} {Pfam: Brix domain [PF04427.20, score=63.3]} {Human: ENSG00000117133, RPF1, ribosome production factor 1 homolog, [RH, Score=210, Expect=9e-65]} {Mouse: ENSMUSG00000028187, Rpf1, ribosome production factor 1 homolog, [RH, Score=207, Expect=8e-64]} {Dmel: FBgn0032408, CG6712, [RH, Score=190, Expect=1e-56]} {Celegans: WBGene00009711, F44G4.1, Brix domain-containing protein F44G4.1, [RH, Score=195, Expect=6e-59]} {Smed: dd_Smed_v6_9839_0_1, dd_Smed_v6_9839_0_1, [RH, Score=166, Expect=8e-49]} {RNA1509_15262} {RNA1310_12113.1} {RNA815_12759}

Mlig455_011220 {REF} {Length: 5225} {TRANSSPLICED} {Pfam: Brix domain [PF04427.20, score=63.3]} {Human: ENSG00000117133, RPF1, ribosome production factor 1 homolog, [RH, Score=210, Expect=9e-65]} {Mouse: ENSMUSG00000028187, Rpf1, ribosome production factor 1 homolog, [RH, Score=207, Expect=8e-64]} {Dmel: FBgn0032408, CG6712, [RH, Score=190, Expect=1e-56]} {Celegans: WBGene00009711, F44G4.1, Brix domain-containing protein F44G4.1, [RH, Score=195, Expect=6e-59]} {Smed: dd_Smed_v6_9839_0_1, dd_Smed_v6_9839_0_1, [RH, Score=166, Expect=8e-49]} {RNA1509_15262} {RNA1310_12113.1} {RNA815_12759}

Mlig455_024752 {REF} {Length: 4561} {Pfam: Brix domain [PF04427.20, score=63.4]} {Human: ENSG00000117133, RPF1, ribosome production factor 1 homolog, [RH, Score=211, Expect=3e-65]} {Mouse: ENSMUSG00000028187, Rpf1, ribosome production factor 1 homolog, [RH, Score=207, Expect=3e-64]} {Dmel: FBgn0032408, CG6712, [RH, Score=190, Expect=4e-57]} {Celegans: WBGene00009711, F44G4.1, Brix domain-containing protein F44G4.1, [RH, Score=195, Expect=4e-59]} {Smed: dd_Smed_v6_9839_0_1, dd_Smed_v6_9839_0_1, [RH, Score=167, Expect=3e-49]} {RNA1509_15262} {RNA1310_12113.1} {RNA815_12759}
9. MligTC455_53080 183 3.81 Mlig455_033529

Neo: Irradiation

Age: Up-Down-Up

 FANCD2 0.951 - - - - - 0.951 Mlig455_033529 {REF} {Length: 5286} {TRANSSPLICED} {Pfam: Fanconi anaemia protein FancD2 nuclease [PF14631.8, score=216.3]} {Human: ENSG00000144554, FANCD2, FA complementation group D2, [RH, Score=131, Expect=6e-30]} {Mouse: ENSMUSG00000034023, Fancd2, Fanconi anemia, complementation group D2, [RH, Score=132, Expect=2e-30]} {Smed: dd_Smed_v6_12881_0_1, dd_Smed_v6_12881_0_1, [RH, Score=70.9, Expect=5e-12]} {RNA1509_14338, RNA1509_52086, RNA1509_57752} {RNA1310_1038, RNA1509_14338, RNA1509_52086, RNA1509_57752} {RNA1509_14338, RNA1509_52086, RNA1509_57752, RNA815_21338}
10. MligTC455_15269 45 0.94 Mlig455_044168

Neo: Irradiation

Age: Down-Down-Up

 0.95 - - - 0.950 - - Mlig455_044168 {REF} {Length: 754} {TRANSSPLICED} {RNA1509_43197} {RNA1310_34733.2} {RNA815_16407}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA