TomoSeq data search

Data search

Results for MligTC455_51376

Cluster

Total UMI counts

Global CPM

Transcripts

Categories

Human homolog

Annotation

MligTC455_51376

440

9.17

Mlig455_065689, Mlig455_065695

Neo: Irradiation

Age: -

SPTLC2

Mlig455_065689 {REF} {Length: 4266} {TRANSSPLICED} {Pfam: Aminotransferase class I and II [PF00155.23, score=177.2]; Aminotransferase class-V [PF00266.21, score=20.2]} {Human: ENSG00000100596, SPTLC2, serine palmitoyltransferase long chain base subunit 2, [RH, Score=596, Expect=0.0]} {Mouse: ENSMUSG00000021036, Sptlc2, serine palmitoyltransferase, long chain base subunit 2, [RH, Score=599, Expect=0.0]} {Dmel: FBgn0002524, lace, [RH, Score=496, Expect=1e-170]} {Celegans: WBGene00018398, sptl-2, Serine palmitoyltransferase 2, [RH, Score=516, Expect=9e-179]} {Smed: dd_Smed_v6_4337_0_1, dd_Smed_v6_4337_0_1, [RH, Score=613, Expect=0.0]} {RNA1509_12323, RNA1509_27460, RNA1509_28113, RNA1509_35106, RNA1509_40619, RNA1509_42651} {RNA1310_12862.1, RNA1509_12323, RNA1509_27460, RNA1509_28113, RNA1509_35106, RNA1509_40619, RNA1509_42651} {RNA1509_12323, RNA1509_27460, RNA1509_28113, RNA1509_35106, RNA1509_40619, RNA1509_42651, RNA815_9910}

Mlig455_065695 {REF} {Length: 1643} {Human: ENSG00000100596, SPTLC2, serine palmitoyltransferase long chain base subunit 2, [Score=64.7, Expect=2e-13]; ENSG00000172296, SPTLC3, serine palmitoyltransferase long chain base subunit 3, [Score=63.9, Expect=3e-13]} {Mouse: ENSMUSG00000021036, Sptlc2, serine palmitoyltransferase, long chain base subunit 2, [Score=63.9, Expect=2e-13]} {Dmel: FBgn0002524, lace, [Score=57.4, Expect=3e-11]} {Celegans: WBGene00011932, sptl-3, Serine palmitoyltransferase 3, [Score=63.2, Expect=2e-13]} {Smed: dd_Smed_v6_4337_0_1, dd_Smed_v6_4337_0_1, [Score=71.6, Expect=2e-16]} {RNA1509_12323} {RNA1310_12862.2} {RNA815_9910}

Cumulative graph for MligTC455_51376

Region-enriched expression

Region	logFC	logCPM	Pvalue	FDR	Specificity
RegionR1	0.336	3.446	0.76668	1.00000
RegionR2	0.622	3.446	0.36331	0.75798
RegionR3	0.058	3.446	0.92635	1.00000
RegionR4	-1.045	3.446	0.12611	0.35854
RegionR5	0.03	3.446	0.95274	1.00000
RegionR6	0.258	3.446	0.64468	1.00000
RegionR7	-0.567	3.446	0.42414	1.00000
RegionR8	0.309	3.446	0.68279	1.00000

Regeneration-enriched expression

Region	logFC	logCPM	PValue	FDR	Specificity
RegenerationR1	-6.56	3.446	0.13578	0.87134
RegenerationR2	0.391	3.446	0.53679	0.88681
RegenerationR3	-0.095	3.446	0.89628	1.00000
RegenerationR4	0.376	3.446	0.60932	0.91703
RegenerationR5	0.474	3.446	0.46194	0.83724
RegenerationR6	-0.436	3.446	0.54882	0.83839
RegenerationBL	0.229	3.446	0.75873	1.00000
RegenerationTP	0.52	3.446	0.51627	0.91162

Genes with expression patterns similar to MligTC455_51376

Nr.	Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Σ Spearman correlations	Int1	Int2	Int3	Reg1	Reg2	Reg3	Annotation
1.	MligTC455_51376	440	9.17	Mlig455_065689, Mlig455_065695	Neo: Irradiation Age: -	SPTLC2	6	1.000	1.000	1.000	1.000	1.000	1.000	Mlig455_065689 {REF} {Length: 4266} {TRANSSPLICED} {Pfam: Aminotransferase class I and II [PF00155.23, score=177.2]; Aminotransferase class-V [PF00266.21, score=20.2]} {Human: ENSG00000100596, SPTLC2, serine palmitoyltransferase long chain base subunit 2, [RH, Score=596, Expect=0.0]} {Mouse: ENSMUSG00000021036, Sptlc2, serine palmitoyltransferase, long chain base subunit 2, [RH, Score=599, Expect=0.0]} {Dmel: FBgn0002524, lace, [RH, Score=496, Expect=1e-170]} {Celegans: WBGene00018398, sptl-2, Serine palmitoyltransferase 2, [RH, Score=516, Expect=9e-179]} {Smed: dd_Smed_v6_4337_0_1, dd_Smed_v6_4337_0_1, [RH, Score=613, Expect=0.0]} {RNA1509_12323, RNA1509_27460, RNA1509_28113, RNA1509_35106, RNA1509_40619, RNA1509_42651} {RNA1310_12862.1, RNA1509_12323, RNA1509_27460, RNA1509_28113, RNA1509_35106, RNA1509_40619, RNA1509_42651} {RNA1509_12323, RNA1509_27460, RNA1509_28113, RNA1509_35106, RNA1509_40619, RNA1509_42651, RNA815_9910} Mlig455_065695 {REF} {Length: 1643} {Human: ENSG00000100596, SPTLC2, serine palmitoyltransferase long chain base subunit 2, [Score=64.7, Expect=2e-13]; ENSG00000172296, SPTLC3, serine palmitoyltransferase long chain base subunit 3, [Score=63.9, Expect=3e-13]} {Mouse: ENSMUSG00000021036, Sptlc2, serine palmitoyltransferase, long chain base subunit 2, [Score=63.9, Expect=2e-13]} {Dmel: FBgn0002524, lace, [Score=57.4, Expect=3e-11]} {Celegans: WBGene00011932, sptl-3, Serine palmitoyltransferase 3, [Score=63.2, Expect=2e-13]} {Smed: dd_Smed_v6_4337_0_1, dd_Smed_v6_4337_0_1, [Score=71.6, Expect=2e-16]} {RNA1509_12323} {RNA1310_12862.2} {RNA815_9910}
2.	MligTC455_49233	685	14.27	Mlig455_069309	Neo: Irradiation Age: Up-Up-Down	PRKAG1	0.964	-	-	-	-	-	0.964	Mlig455_069309 {REF} {Length: 4161} {Pfam: CBS domain [PF00571.30, score=40.6]} {Human: ENSG00000181929, PRKAG1, protein kinase AMP-activated non-catalytic subunit gamma 1, [Score=251, Expect=1e-76]; ENSG00000106617, PRKAG2, protein kinase AMP-activated non-catalytic subunit gamma 2, [Score=248, Expect=8e-73]} {Mouse: ENSMUSG00000067713, Prkag1, protein kinase, AMP-activated, gamma 1 non-catalytic subunit, [Score=251, Expect=1e-76]; ENSMUSG00000028944, Prkag2, protein kinase, AMP-activated, gamma 2 non-catalytic subunit, [Score=247, Expect=2e-72]} {Dmel: FBgn0264357, SNF4Agamma, SNF4/AMP-activated protein kinase gamma subunit, [Score=276, Expect=7e-83]} {Celegans: WBGene00013732, aakg-1, AMP-Activated protein Kinase Gamma subunit, [Score=220, Expect=1e-63]} {Smed: dd_Smed_v6_4877_0_1, dd_Smed_v6_4877_0_1, [Score=205, Expect=2e-59]} {RNA1509_13211} {RNA1310_6732.1, RNA1509_13211} {RNA1509_13211, RNA815_8244.1}
3.	MligTC455_38751	286	5.97	Mlig455_041346	Neo: Germline Age: -	AP3M1	0.959	-	-	-	-	-	0.959	Mlig455_041346 {REF} {Length: 2725} {TRANSSPLICED} {Pfam: Adaptor complexes medium subunit family [PF00928.23, score=210.9]; Clathrin adaptor complex small chain [PF01217.22, score=41.7]} {Human: ENSG00000185009, AP3M1, adaptor related protein complex 3 subunit mu 1, [RH, Score=531, Expect=0.0]} {Mouse: ENSMUSG00000021824, Ap3m1, adaptor-related protein complex 3, mu 1 subunit, [RH, Score=530, Expect=0.0]} {Dmel: FBgn0000330, cm, carmine, [RH, Score=503, Expect=5e-178]} {Celegans: WBGene00000164, apm-3, AdaPtin, Mu/medium chain (Clathrin associated complex), [RH, Score=481, Expect=3e-169]} {Smed: dd_Smed_v6_6368_0_1, dd_Smed_v6_6368_0_1, [Score=447, Expect=2e-156]} {RNA1509_42193} {RNA1310_18368} {RNA815_13395}
4.	MligTC455_48685	235	4.9	Mlig455_029936	Neo: - Age: Down-Up-Down Region-enriched R5: 2.194/0.00270	B4GALT4	0.958	-	-	-	-	-	0.958	Mlig455_029936 {REF} {Length: 2172} {TRANSSPLICED} {Pfam: N-terminal region of glycosyl transferase group 7 [PF13733.8, score=107.0]; N-terminal domain of galactosyltransferase [PF02709.16, score=59.1]} {Human: ENSG00000121578, B4GALT4, beta-1,4-galactosyltransferase 4, [Score=161, Expect=5e-46]} {Mouse: ENSMUSG00000022793, B4galt4, UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 4, [Score=155, Expect=4e-44]} {Dmel: FBgn0027538, beta4GalNAcTA, [Score=153, Expect=1e-42]} {Celegans: WBGene00000269, bre-4, Beta-1,4-N-acetylgalactosaminyltransferase bre-4, [Score=157, Expect=2e-44]} {Smed: dd_Smed_v6_9651_0_1, dd_Smed_v6_9651_0_1, [Score=160, Expect=3e-45]} {RNA1509_50662} {RNA1310_19457} {RNA815_4062}
5.	MligTC455_48833	702	14.62	Mlig455_006923, Mlig455_017937	Neo: - Age: - Region-enriched R5: 1.677/0.02053	RNF2	0.956	-	-	-	-	-	0.956	Mlig455_006923 {REF} {Length: 2956} {TRANSSPLICED} {Pfam: Zinc finger, C3HC4 type (RING finger) [PF13923.8, score=53.5]; RAWUL domain RING finger- and WD40-associated ubiquitin-like [PF16207.7, score=40.8]; Zinc finger, C3HC4 type (RING finger) [PF00097.27, score=35.9]; Ring finger domain [PF13639.8, score=32.7]; Zinc finger, C3HC4 type (RING finger) [PF13920.8, score=27.2]; RING-type zinc-finger [PF13445.8, score=22.4]; zinc-RING finger domain [PF14634.8, score=20.2]; zinc finger of C3HC4-type, RING [PF15227.8, score=20.1]; Zinc-finger of the MIZ type in Nse subunit [PF11789.10, score=19.4]} {Human: ENSG00000121481, RNF2, ring finger protein 2, [RH, Score=252, Expect=1e-80]} {Mouse: ENSMUSG00000026484, Rnf2, ring finger protein 2, [RH, Score=252, Expect=9e-81]; ENSMUSG00000024325, Ring1, ring finger protein 1, [RH, Score=242, Expect=6e-76]} {Dmel: FBgn0003330, Sce, Sex combs extra, [RH, Score=226, Expect=9e-70]} {Celegans: WBGene00020496, spat-3, Suppressor of PAr-Two defect, [RH, Score=82.8, Expect=9e-17]} {Smed: dd_Smed_v6_8989_0_1, dd_Smed_v6_8989_0_1, [RH, Score=191, Expect=2e-56]} {RNA1509_26957} {RNA1310_17990, RNA1509_26957} {RNA1509_26957, RNA815_16348} Mlig455_017937 {REF} {Length: 2921} {TRANSSPLICED} {Pfam: Zinc finger, C3HC4 type (RING finger) [PF13923.8, score=53.5]; RAWUL domain RING finger- and WD40-associated ubiquitin-like [PF16207.7, score=40.8]; Zinc finger, C3HC4 type (RING finger) [PF00097.27, score=35.9]; Ring finger domain [PF13639.8, score=32.7]; Zinc finger, C3HC4 type (RING finger) [PF13920.8, score=27.2]; RING-type zinc-finger [PF13445.8, score=22.4]; zinc-RING finger domain [PF14634.8, score=20.2]; zinc finger of C3HC4-type, RING [PF15227.8, score=20.1]; Zinc-finger of the MIZ type in Nse subunit [PF11789.10, score=19.4]} {Human: ENSG00000121481, RNF2, ring finger protein 2, [RH, Score=252, Expect=1e-80]} {Mouse: ENSMUSG00000026484, Rnf2, ring finger protein 2, [RH, Score=252, Expect=9e-81]; ENSMUSG00000024325, Ring1, ring finger protein 1, [RH, Score=242, Expect=6e-76]} {Dmel: FBgn0003330, Sce, Sex combs extra, [RH, Score=226, Expect=9e-70]} {Celegans: WBGene00020496, spat-3, Suppressor of PAr-Two defect, [RH, Score=82.8, Expect=9e-17]} {Smed: dd_Smed_v6_8989_0_1, dd_Smed_v6_8989_0_1, [RH, Score=191, Expect=2e-56]} {RNA1509_26957} {RNA1310_17990} {RNA815_16348}
6.	MligTC455_50309	756	15.76	Mlig455_009133	Neo: Irradiation Age: logFC(26M/2M)=0.305	SLC26A5	0.956	-	-	-	-	-	0.956	Mlig455_009133 {REF} {Length: 7468} {TRANSSPLICED} {Pfam: Sulfate permease family [PF00916.22, score=347.9]; STAS domain [PF01740.23, score=95.6]} {Human: ENSG00000170615, SLC26A5, solute carrier family 26 member 5, [RH, Score=433, Expect=1e-139]} {Mouse: ENSMUSG00000029015, Slc26a5, solute carrier family 26, member 5, [RH, Score=444, Expect=8e-144]} {Dmel: FBgn0036770, Prestin, [RH, Score=363, Expect=3e-113]} {Celegans: WBGene00020914, sulp-6, SULfate Permease family, [RH, Score=375, Expect=5e-117]} {Smed: dd_Smed_v6_4250_0_2, dd_Smed_v6_4250_0_2, [Score=470, Expect=3e-154]} {RNA1509_33426, RNA1509_33898, RNA1509_9370} {RNA1310_7265, RNA1509_33426, RNA1509_33898, RNA1509_9370} {RNA1509_33426, RNA1509_33898, RNA1509_9370, RNA815_2295}
7.	MligTC455_21092	581	12.11	Mlig455_014955	Neo: - Age: -	LRP3	0.955	-	-	-	-	-	0.955	Mlig455_014955 {REF} {Length: 2087} {TRANSSPLICED} {Pfam: Low-density lipoprotein receptor domain class A [PF00057.20, score=53.2]} {Human: ENSG00000130881, LRP3, LDL receptor related protein 3, [Score=115, Expect=1e-27]} {Mouse: ENSMUSG00000001802, Lrp3, low density lipoprotein receptor-related protein 3, [RH, Score=114, Expect=1e-27]} {Dmel: FBgn0053087, LRP1, LDL receptor protein 1, [Score=71.6, Expect=3e-13]} {Celegans: WBGene00003072, lrp-2, Low-density lipoprotein RecePtor related, [Score=73.6, Expect=6e-14]} {Smed: dd_Smed_v6_6784_0_1, dd_Smed_v6_6784_0_1, [RH, Score=155, Expect=2e-43]} {RNA1509_31076} {RNA1310_16875.1} {RNA815_33006}
8.	MligTC455_09945	517	10.78	Mlig455_024073	Neo: - Age: -	NT5C2	0.952	-	-	-	-	-	0.952	Mlig455_024073 {REF} {Length: 2077} {TRANSSPLICED} {Pfam: 5' nucleotidase family [PF05761.16, score=458.1]; Haloacid dehalogenase-like hydrolase [PF13419.8, score=19.5]} {Human: ENSG00000076685, NT5C2, 5'-nucleotidase, cytosolic II, [Score=419, Expect=7e-141]} {Mouse: ENSMUSG00000025041, Nt5c2, 5'-nucleotidase, cytosolic II, [Score=419, Expect=7e-141]} {Dmel: FBgn0052549, CG32549, [Score=445, Expect=2e-150]} {Celegans: WBGene00022201, Y71H10B.1, [Score=420, Expect=8e-142]} {Smed: dd_Smed_v6_8710_0_1, dd_Smed_v6_8710_0_1, [Score=410, Expect=3e-138]} {RNA1509_30059, RNA1509_49265, RNA1509_50971} {RNA1310_102.1, RNA1509_49265, RNA1509_50971} {RNA1509_49265, RNA1509_50971, RNA815_4187.1}
9.	MligTC455_49232	695	14.48	Mlig455_047348	Neo: Irradiation Age: Up-Down-Down	PRKAG1	0.95	-	-	-	-	-	0.950	Mlig455_047348 {REF} {Length: 6342} {Pfam: CBS domain [PF00571.30, score=99.7]} {Human: ENSG00000181929, PRKAG1, protein kinase AMP-activated non-catalytic subunit gamma 1, [RH, Score=379, Expect=5e-125]; ENSG00000106617, PRKAG2, protein kinase AMP-activated non-catalytic subunit gamma 2, [RH, Score=370, Expect=2e-118]} {Mouse: ENSMUSG00000067713, Prkag1, protein kinase, AMP-activated, gamma 1 non-catalytic subunit, [RH, Score=379, Expect=6e-125]; ENSMUSG00000028944, Prkag2, protein kinase, AMP-activated, gamma 2 non-catalytic subunit, [RH, Score=371, Expect=1e-118]} {Dmel: FBgn0264357, SNF4Agamma, SNF4/AMP-activated protein kinase gamma subunit, [RH, Score=402, Expect=6e-123]} {Celegans: WBGene00013732, aakg-1, AMP-Activated protein Kinase Gamma subunit, [RH, Score=345, Expect=1e-106]} {Smed: dd_Smed_v6_4877_0_1, dd_Smed_v6_4877_0_1, [RH, Score=317, Expect=4e-101]} {RNA1509_27693, RNA1509_35401, RNA1509_39318, RNA1509_47295, RNA1509_7168} {RNA1310_6732.1, RNA1509_27693, RNA1509_35401, RNA1509_39318, RNA1509_47295, RNA1509_7168} {RNA1509_27693, RNA1509_35401, RNA1509_39318, RNA1509_47295, RNA1509_7168, RNA815_8244.1}

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