TomoSeq data search

Data search

Results for MligTC455_51494

Cluster

Total UMI counts

Global CPM

Transcripts

Categories

Human homolog

Annotation

MligTC455_51494

322

6.71

Mlig455_047169, Mlig455_048513

Neo: -

Age: Down-Down-Up, logFC(26M/2M)=0.412

Region-enriched R4: 2.661/0.02793

RHOG

Mlig455_047169 {REF} {Length: 2692} {Pfam: Ras family [PF00071.24, score=167.1]; Caspase domain [PF00656.24, score=111.0]; Ras of Complex, Roc, domain of DAPkinase [PF08477.15, score=82.0]; RsgA GTPase [PF03193.18, score=24.6]; AAA ATPase domain [PF13191.8, score=21.3]; MCM P-loop domain [PF00493.25, score=18.3]} {Human: ENSG00000177105, RHOG, ras homolog family member G, [Score=152, Expect=9e-42]; ENSG00000136238, RAC1, Rac family small GTPase 1, [Score=151, Expect=2e-41]; ENSG00000169750, RAC3, Rac family small GTPase 3, [Score=149, Expect=1e-40]; ENSG00000128340, RAC2, Rac family small GTPase 2, [Score=146, Expect=6e-40]} {Mouse: ENSMUSG00000073982, Rhog, ras homolog family member G, [Score=152, Expect=6e-42]; ENSMUSG00000001847, Rac1, Rac family small GTPase 1, [Score=151, Expect=1e-41]; ENSMUSG00000018012, Rac3, Rac family small GTPase 3, [Score=149, Expect=8e-41]} {Dmel: FBgn0010333, Rac1, [Score=149, Expect=3e-41]} {Celegans: WBGene00000424, ced-10, Ras-related protein ced-10, [Score=153, Expect=9e-43]} {Smed: dd_Smed_v6_610_0_1, dd_Smed_v6_610_0_1, [Score=139, Expect=9e-38]} {RNA1509_20909} {RNA1310_6172} {RNA815_2232}

Mlig455_048513 {REF} {Length: 2755} {Pfam: Ras family [PF00071.24, score=185.1]; Caspase domain [PF00656.24, score=110.9]; Ras of Complex, Roc, domain of DAPkinase [PF08477.15, score=82.0]; RsgA GTPase [PF03193.18, score=23.9]; AAA ATPase domain [PF13191.8, score=20.9]} {Human: ENSG00000177105, RHOG, ras homolog family member G, [Score=166, Expect=7e-47]; ENSG00000136238, RAC1, Rac family small GTPase 1, [Score=164, Expect=3e-46]; ENSG00000169750, RAC3, Rac family small GTPase 3, [Score=162, Expect=3e-45]; ENSG00000128340, RAC2, Rac family small GTPase 2, [Score=159, Expect=2e-44]} {Mouse: ENSMUSG00000073982, Rhog, ras homolog family member G, [Score=166, Expect=5e-47]; ENSMUSG00000001847, Rac1, Rac family small GTPase 1, [Score=164, Expect=2e-46]; ENSMUSG00000018012, Rac3, Rac family small GTPase 3, [Score=162, Expect=2e-45]} {Dmel: FBgn0010333, Rac1, [Score=163, Expect=5e-46]} {Celegans: WBGene00000424, ced-10, Ras-related protein ced-10, [Score=167, Expect=9e-48]} {Smed: dd_Smed_v6_610_0_1, dd_Smed_v6_610_0_1, [Score=153, Expect=1e-42]} {RNA1509_20909} {RNA1310_6172, RNA1509_20909} {RNA1509_20909, RNA815_2232}

Cumulative graph for MligTC455_51494

Region-enriched expression

Region	logFC	logCPM	Pvalue	FDR	Specificity
RegionR1	0.565	3.137	0.71440	1.00000
RegionR2	-2.483	3.137	0.01336	0.12085
RegionR3	0.682	3.137	0.34300	0.87871
RegionR4	2.661	3.137	0.00357	0.02793
RegionR5	-0.212	3.137	0.79012	1.00000
RegionR6	-0.394	3.137	0.62559	1.00000
RegionR7	-0.874	3.137	0.39274	1.00000
RegionR8	0.055	3.137	0.95935	1.00000

Regeneration-enriched expression

Region	logFC	logCPM	PValue	FDR	Specificity
RegenerationR1	-6.853	3.137	0.13617	0.87134
RegenerationR2	1.901	3.137	0.03857	0.32385
RegenerationR3	-0.07	3.137	0.93004	1.00000
RegenerationR4	-0.507	3.137	0.58064	0.90556
RegenerationR5	0.915	3.137	0.29271	0.72076
RegenerationR6	-0.524	3.137	0.57790	0.85655
RegenerationBL	-0.013	3.137	0.99155	1.00000
RegenerationTP	-0.076	3.137	0.95050	1.00000

Genes with expression patterns similar to MligTC455_51494

Nr.	Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Σ Spearman correlations	Int1	Int2	Int3	Reg1	Reg2	Reg3	Annotation
1.	MligTC455_51494	322	6.71	Mlig455_047169, Mlig455_048513	Neo: - Age: Down-Down-Up, logFC(26M/2M)=0.412 Region-enriched R4: 2.661/0.02793	RHOG	6	1.000	1.000	1.000	1.000	1.000	1.000	Mlig455_047169 {REF} {Length: 2692} {Pfam: Ras family [PF00071.24, score=167.1]; Caspase domain [PF00656.24, score=111.0]; Ras of Complex, Roc, domain of DAPkinase [PF08477.15, score=82.0]; RsgA GTPase [PF03193.18, score=24.6]; AAA ATPase domain [PF13191.8, score=21.3]; MCM P-loop domain [PF00493.25, score=18.3]} {Human: ENSG00000177105, RHOG, ras homolog family member G, [Score=152, Expect=9e-42]; ENSG00000136238, RAC1, Rac family small GTPase 1, [Score=151, Expect=2e-41]; ENSG00000169750, RAC3, Rac family small GTPase 3, [Score=149, Expect=1e-40]; ENSG00000128340, RAC2, Rac family small GTPase 2, [Score=146, Expect=6e-40]} {Mouse: ENSMUSG00000073982, Rhog, ras homolog family member G, [Score=152, Expect=6e-42]; ENSMUSG00000001847, Rac1, Rac family small GTPase 1, [Score=151, Expect=1e-41]; ENSMUSG00000018012, Rac3, Rac family small GTPase 3, [Score=149, Expect=8e-41]} {Dmel: FBgn0010333, Rac1, [Score=149, Expect=3e-41]} {Celegans: WBGene00000424, ced-10, Ras-related protein ced-10, [Score=153, Expect=9e-43]} {Smed: dd_Smed_v6_610_0_1, dd_Smed_v6_610_0_1, [Score=139, Expect=9e-38]} {RNA1509_20909} {RNA1310_6172} {RNA815_2232} Mlig455_048513 {REF} {Length: 2755} {Pfam: Ras family [PF00071.24, score=185.1]; Caspase domain [PF00656.24, score=110.9]; Ras of Complex, Roc, domain of DAPkinase [PF08477.15, score=82.0]; RsgA GTPase [PF03193.18, score=23.9]; AAA ATPase domain [PF13191.8, score=20.9]} {Human: ENSG00000177105, RHOG, ras homolog family member G, [Score=166, Expect=7e-47]; ENSG00000136238, RAC1, Rac family small GTPase 1, [Score=164, Expect=3e-46]; ENSG00000169750, RAC3, Rac family small GTPase 3, [Score=162, Expect=3e-45]; ENSG00000128340, RAC2, Rac family small GTPase 2, [Score=159, Expect=2e-44]} {Mouse: ENSMUSG00000073982, Rhog, ras homolog family member G, [Score=166, Expect=5e-47]; ENSMUSG00000001847, Rac1, Rac family small GTPase 1, [Score=164, Expect=2e-46]; ENSMUSG00000018012, Rac3, Rac family small GTPase 3, [Score=162, Expect=2e-45]} {Dmel: FBgn0010333, Rac1, [Score=163, Expect=5e-46]} {Celegans: WBGene00000424, ced-10, Ras-related protein ced-10, [Score=167, Expect=9e-48]} {Smed: dd_Smed_v6_610_0_1, dd_Smed_v6_610_0_1, [Score=153, Expect=1e-42]} {RNA1509_20909} {RNA1310_6172, RNA1509_20909} {RNA1509_20909, RNA815_2232}
2.	MligTC455_25231	272	5.67	Mlig455_028467	Neo: - Age: -	TRPM6	1.809	-	-	0.856	-	0.953	-	Mlig455_028467 {REF} {Length: 8293} {TRANSSPLICED} {Pfam: SLOG in TRPM [PF18139.3, score=289.6]; SLOG in TRPM, prokaryote [PF18171.3, score=53.5]; Ion transport protein [PF00520.33, score=27.5]} {Human: ENSG00000119121, TRPM6, transient receptor potential cation channel subfamily M member 6, [Score=452, Expect=2e-129]} {Mouse: ENSMUSG00000027365, Trpm7, transient receptor potential cation channel, subfamily M, member 7, [Score=465, Expect=2e-134]; ENSMUSG00000024727, Trpm6, transient receptor potential cation channel, subfamily M, member 6, [Score=459, Expect=5e-132]} {Dmel: FBgn0265194, Trpm, Transient receptor potential cation channel, subfamily M, [Score=412, Expect=5e-121]} {Celegans: WBGene00001651, gon-2, Transient receptor potential channel, [Score=649, Expect=0.0]} {Smed: dd_Smed_v6_11377_0_1, dd_Smed_v6_11377_0_1, [RH, Score=434, Expect=3e-128]} {RNA1509_4632, RNA1509_49677} {RNA1310_693.1, RNA1509_49677} {RNA1509_49677, RNA815_645}
3.	MligTC455_38075	513	10.69	Mlig455_037147	Neo: - Age: Down-Down-Up		1.711	-	-	0.952	-	-	0.759	Mlig455_037147 {REF} {Length: 3140} {Pfam: Zona pellucida-like domain [PF00100.25, score=46.9]; Scavenger receptor cysteine-rich domain [PF00530.20, score=43.8]} {RNA1509_39101} {RNA1310_14098} {RNA815_2224.1}
4.	MligTC455_33392	79	1.65	Mlig455_020352	Neo: - Age: -		1.707	-	-	-	0.750	0.957	-	Mlig455_020352 {REF} {Length: 2840} {TRANSSPLICED} {RNA1509_27913, RNA1509_43079} {RNA1310_6536, RNA1509_27913, RNA1509_43079} {RNA1509_27913, RNA1509_43079, RNA815_19665}
5.	MligTC455_33560	444	9.26	Mlig455_007436	Neo: Neoblast, stringent Age: - Region-enriched R5: 1.486/0.00400	MCM3	0.98	-	-	0.980	-	-	-	Mlig455_007436 {REF} {Length: 4446} {Pfam: MCM P-loop domain [PF00493.25, score=315.6]; MCM OB domain [PF17207.5, score=111.7]; MCM AAA-lid domain [PF17855.3, score=68.3]; Magnesium chelatase, subunit ChlI [PF01078.23, score=29.7]; MCM N-terminal domain [PF14551.8, score=23.0]} {Human: ENSG00000112118, MCM3, minichromosome maintenance complex component 3, [RH, Score=854, Expect=0.0]} {Mouse: ENSMUSG00000041859, Mcm3, minichromosome maintenance complex component 3, [RH, Score=853, Expect=0.0]} {Dmel: FBgn0284442, Mcm3, Minichromosome maintenance 3, [RH, Score=861, Expect=0.0]} {Celegans: WBGene00003155, mcm-3, DNA helicase, [RH, Score=725, Expect=0.0]} {Smed: dd_Smed_v6_6734_0_1, dd_Smed_v6_6734_0_1, [RH, Score=821, Expect=0.0]} {RNA1509_3186, RNA1509_54546} {RNA1310_2519.1, RNA1509_54546} {RNA1509_54546, RNA815_3149.1}
6.	MligTC455_45077	180	3.75	Mlig455_003172	Neo: - Age: -		0.97	-	-	0.970	-	-	-	Mlig455_003172 {REF} {Length: 1465} {NoTransDecoderORF} {RNA1509_19053} {RNA1310_32160.1, RNA1509_19053} {RNA1509_19053, RNA815_42095}
7.	MligTC455_07270	95	1.98	Mlig455_038251, Mlig455_038392	Neo: - Age: logFC(26M/2M)=0.389	CYFIP1	0.957	-	-	0.957	-	-	-	Mlig455_038251 {REF} {Length: 615} {TRANSSPLICED} {Human: ENSG00000273749, CYFIP1, cytoplasmic FMR1 interacting protein 1, [Score=161, Expect=8e-51]; ENSG00000280618, CYFIP1, cytoplasmic FMR1 interacting protein 1, [Score=161, Expect=8e-51]; ENSG00000055163, CYFIP2, cytoplasmic FMR1 interacting protein 2, [Score=156, Expect=7e-44]} {Mouse: ENSMUSG00000030447, Cyfip1, cytoplasmic FMR1 interacting protein 1, [Score=160, Expect=3e-45]; ENSMUSG00000020340, Cyfip2, cytoplasmic FMR1 interacting protein 2, [Score=153, Expect=6e-43]} {Dmel: FBgn0038320, Sra-1, specifically Rac1-associated protein 1, [Score=150, Expect=2e-42]} {Celegans: WBGene00001579, gex-2, Cytoplasmic FMR1-interacting protein homolog, [Score=134, Expect=1e-36]} {Smed: dd_Smed_v6_1814_0_1, dd_Smed_v6_1814_0_1, [Score=131, Expect=1e-35]} {RNA1509_7802} {RNA1310_2044.1} {RNA815_586} Mlig455_038392 {REF} {Length: 5322} {TRANSSPLICED} {Pfam: Cytoplasmic Fragile-X interacting family [PF05994.13, score=985.8]; CYRIA/CYRIB Rac1 binding domain [PF07159.14, score=31.7]} {Human: ENSG00000273749, CYFIP1, cytoplasmic FMR1 interacting protein 1, [RH, Score=1258, Expect=0.0]; ENSG00000055163, CYFIP2, cytoplasmic FMR1 interacting protein 2, [RH, Score=1255, Expect=0.0]} {Mouse: ENSMUSG00000030447, Cyfip1, cytoplasmic FMR1 interacting protein 1, [RH, Score=1256, Expect=0.0]; ENSMUSG00000020340, Cyfip2, cytoplasmic FMR1 interacting protein 2, [RH, Score=1254, Expect=0.0]} {Dmel: FBgn0038320, Sra-1, specifically Rac1-associated protein 1, [RH, Score=1242, Expect=0.0]} {Celegans: WBGene00001579, gex-2, Cytoplasmic FMR1-interacting protein homolog, [RH, Score=1056, Expect=0.0]} {Smed: dd_Smed_v6_1814_0_1, dd_Smed_v6_1814_0_1, [RH, Score=1166, Expect=0.0]} {RNA1509_13260, RNA1509_36415, RNA1509_7802} {RNA1310_2044.1, RNA1509_13260, RNA1509_36415, RNA1509_7802} {RNA1509_13260, RNA1509_36415, RNA1509_7802, RNA815_586}
8.	MligTC455_40485	354	7.37	Mlig455_043700, Mlig455_047453	Neo: - Age: Down-Up-Down	DOCK1	0.955	-	-	-	-	0.955	-	Mlig455_043700 {REF} {Length: 5968} {Pfam: C2 domain in Dock180 and Zizimin proteins [PF14429.8, score=33.1]} {Human: ENSG00000150760, DOCK1, dedicator of cytokinesis 1, [Score=56.2, Expect=5e-07]} {Mouse: ENSMUSG00000058325, Dock1, dedicator of cytokinesis 1, [Score=55.8, Expect=5e-07]} {RNA1509_19446} {RNA1310_1320} {RNA815_27032} Mlig455_047453 {REF} {Length: 5912} {Pfam: C2 domain in Dock180 and Zizimin proteins [PF14429.8, score=33.1]} {Human: ENSG00000150760, DOCK1, dedicator of cytokinesis 1, [Score=56.2, Expect=5e-07]} {Mouse: ENSMUSG00000058325, Dock1, dedicator of cytokinesis 1, [Score=55.8, Expect=5e-07]} {RNA1509_19446} {RNA1310_1320} {RNA815_27032}
9.	MligTC455_31087	48	1	Mlig455_062502	Neo: - Age: Up-Down-Down	INSR	0.952	-	-	-	-	0.952	-	Mlig455_062502 {REF} {Length: 6430} {TRANSSPLICED} {Pfam: Protein tyrosine and serine/threonine kinase [PF07714.19, score=266.2]; Protein kinase domain [PF00069.27, score=158.2]; Receptor family ligand binding region [PF01094.30, score=62.3]; Kinase-like [PF14531.8, score=19.5]} {Human: ENSG00000171105, INSR, insulin receptor, [Score=207, Expect=1e-53]; ENSG00000027644, INSRR, insulin receptor related receptor, [Score=206, Expect=2e-53]; ENSG00000140443, IGF1R, insulin like growth factor 1 receptor, [Score=202, Expect=4e-52]} {Mouse: ENSMUSG00000005534, Insr, insulin receptor, [Score=211, Expect=7e-55]; ENSMUSG00000005640, Insrr, insulin receptor-related receptor, [Score=201, Expect=5e-52]; ENSMUSG00000005533, Igf1r, insulin-like growth factor I receptor, [Score=201, Expect=4e-52]} {Dmel: FBgn0020391, Nrk, Neurospecific receptor kinase, [Score=199, Expect=1e-52]} {Celegans: WBGene00000898, daf-2, Insulin-like receptor Insulin-like receptor subunit alpha Insulin-like receptor subunit beta, [Score=182, Expect=8e-48]} {Smed: dd_Smed_v6_6633_0_1, dd_Smed_v6_6633_0_1, [RH, Score=293, Expect=1e-81]} {RNA1509_41714, RNA1509_57237} {RNA1310_2554, RNA1509_41714, RNA1509_57237} {RNA1509_41714, RNA1509_57237, RNA815_1524}

Berezikov Lab - 2020-2021 © ERIBA