M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_51514

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_51514 55 1.15 Mlig455_052200

Neo: Int S/G2/M

Age: Down-Up-Down

 Mlig455_052200 {REF} {Length: 2486} {TRANSSPLICED} {RNA1509_37154} {RNA1310_37300} {RNA815_23625}

Cumulative graph for MligTC455_51514

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -4.407 1.484 0.99968 1.00000
RegionR2 1.58 1.484 0.27113 0.65552
RegionR3 2.055 1.484 0.06278 0.44313
RegionR4 1.058 1.484 0.39556 0.72236
RegionR5 1.965 1.484 0.05335 0.19652
RegionR6 0.436 1.484 0.64718 1.00000
RegionR7 1.495 1.484 0.30296 0.93801
RegionR8 -4.182 1.484 0.99953 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 0.462 1.484 0.99994 1.00000
RegenerationR2 -0.028 1.484 0.97282 1.00000
RegenerationR3 -0.59 1.484 0.50003 0.85716
RegenerationR4 -0.362 1.484 0.71248 0.95841
RegenerationR5 -0.046 1.484 0.95649 1.00000
RegenerationR6 -0.353 1.484 0.75824 0.95612
RegenerationBL 1.744 1.484 0.34639 0.71372
RegenerationTP 1.266 1.484 0.58144 0.95050


Genes with expression patterns similar to MligTC455_51514

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_51514 55 1.15 Mlig455_052200

Neo: Int S/G2/M

Age: Down-Up-Down

 4 1.000 1.000 - - 1.000 1.000 Mlig455_052200 {REF} {Length: 2486} {TRANSSPLICED} {RNA1509_37154} {RNA1310_37300} {RNA815_23625}
2. MligTC455_27934 359 7.47 Mlig455_004677, Mlig455_004740

Neo: -

Age: logFC(26M/2M)=0.636

Region-enriched R6: 1.975/0.01711

 1.797 0.840 - - - - 0.957

Mlig455_004677 {REF} {Length: 3198} {RNA1509_31206, RNA1509_31286} {RNA1310_19115, RNA1509_31286} {RNA1509_31286, RNA815_41683}

Mlig455_004740 {REF} {Length: 3058} {RNA1509_31206, RNA1509_37445} {RNA1310_19115, RNA1509_37445} {RNA1509_37445, RNA815_52424}
3. MligTC455_41377 2420 50.43 Mlig455_004786, Mlig455_004803, Mlig455_004871

Neo: -

Age: -

 KDM5A 1.767 0.953 - - - - 0.814

Mlig455_004786 {REF} {Length: 5408} {TRANSSPLICED} {Pfam: JmjC domain, hydroxylase [PF02373.24, score=143.4]; PLU-1-like protein [PF08429.13, score=74.7]; ARID/BRIGHT DNA binding domain [PF01388.23, score=61.2]; PHD-finger [PF00628.31, score=38.8]; C5HC2 zinc finger [PF02928.18, score=38.1]; jmjN domain [PF02375.19, score=35.2]} {Human: ENSG00000073614, KDM5A, lysine demethylase 5A, [RH, Score=748, Expect=0.0]} {Mouse: ENSMUSG00000030180, Kdm5a, lysine (K)-specific demethylase 5A, [RH, Score=746, Expect=0.0]} {Dmel: FBgn0031759, lid, little imaginal discs, [Score=642, Expect=0.0]} {Celegans: WBGene00004319, rbr-2, Lysine-specific demethylase rbr-2, [RH, Score=452, Expect=5e-135]} {Smed: dd_Smed_v6_3334_0_1, dd_Smed_v6_3334_0_1, [RH, Score=652, Expect=0.0]} {RNA1509_3266} {RNA1310_946} {RNA815_2037}

Mlig455_004803 {REF} {Length: 5402} {TRANSSPLICED} {Pfam: JmjC domain, hydroxylase [PF02373.24, score=143.4]; PLU-1-like protein [PF08429.13, score=74.3]; ARID/BRIGHT DNA binding domain [PF01388.23, score=61.5]; PHD-finger [PF00628.31, score=38.8]; C5HC2 zinc finger [PF02928.18, score=38.1]; jmjN domain [PF02375.19, score=35.4]} {Human: ENSG00000073614, KDM5A, lysine demethylase 5A, [RH, Score=743, Expect=0.0]} {Mouse: ENSMUSG00000030180, Kdm5a, lysine (K)-specific demethylase 5A, [RH, Score=742, Expect=0.0]} {Dmel: FBgn0031759, lid, little imaginal discs, [Score=638, Expect=0.0]} {Celegans: WBGene00004319, rbr-2, Lysine-specific demethylase rbr-2, [RH, Score=452, Expect=9e-135]} {Smed: dd_Smed_v6_3334_0_1, dd_Smed_v6_3334_0_1, [RH, Score=655, Expect=0.0]} {RNA1509_3266} {RNA1310_946, RNA1509_3266} {RNA1509_3266, RNA815_2037}

Mlig455_004871 {REF} {Length: 5402} {TRANSSPLICED} {Pfam: JmjC domain, hydroxylase [PF02373.24, score=143.4]; PLU-1-like protein [PF08429.13, score=73.7]; ARID/BRIGHT DNA binding domain [PF01388.23, score=61.5]; PHD-finger [PF00628.31, score=38.8]; C5HC2 zinc finger [PF02928.18, score=38.1]; jmjN domain [PF02375.19, score=35.3]} {Human: ENSG00000073614, KDM5A, lysine demethylase 5A, [RH, Score=741, Expect=0.0]} {Mouse: ENSMUSG00000030180, Kdm5a, lysine (K)-specific demethylase 5A, [RH, Score=740, Expect=0.0]} {Dmel: FBgn0031759, lid, little imaginal discs, [Score=638, Expect=0.0]} {Celegans: WBGene00004319, rbr-2, Lysine-specific demethylase rbr-2, [RH, Score=452, Expect=8e-135]} {Smed: dd_Smed_v6_3334_0_1, dd_Smed_v6_3334_0_1, [RH, Score=653, Expect=0.0]} {RNA1509_3266, RNA1509_57885} {RNA1310_946, RNA1509_57885} {RNA1509_57885, RNA815_2037}
4. MligTC455_33691 237 4.94 Mlig455_012285

Neo: -

Age: Down-Up-Up

Region-enriched R5: 1.703/0.04093

 DGKE 1.668 0.953 - - - 0.715 - Mlig455_012285 {REF} {Length: 3876} {TRANSSPLICED} {Pfam: Diacylglycerol kinase accessory domain [PF00609.21, score=152.4]; Diacylglycerol kinase catalytic domain [PF00781.26, score=90.6]; Phorbol esters/diacylglycerol binding domain (C1 domain) [PF00130.24, score=32.3]} {Human: ENSG00000153933, DGKE, diacylglycerol kinase epsilon, [RH, Score=389, Expect=3e-125]} {Mouse: ENSMUSG00000000276, Dgke, diacylglycerol kinase, epsilon, [RH, Score=383, Expect=5e-123]} {Dmel: FBgn0020930, Dgkepsilon, Diacyl glycerol kinase epsilon, [RH, Score=291, Expect=1e-88]} {Celegans: WBGene00000959, dgk-2, Diacylglycerol kinase, [RH, Score=314, Expect=2e-97]} {Smed: dd_Smed_v6_7792_0_3, dd_Smed_v6_7792_0_3, [Score=262, Expect=5e-74]} {RNA1509_58846} {RNA1310_15343.1, RNA1509_58846} {RNA1509_58846, RNA815_16655}
5. MligTC455_39420 105 2.18 Mlig455_026401

Neo: -

Age: Down-Up-Down

 DIDO1 0.977 0.977 - - - - - Mlig455_026401 {REF} {Length: 4026} {TRANSSPLICED} {Pfam: SPOC domain [PF07744.15, score=43.7]; PHD-finger [PF00628.31, score=22.2]} {Human: ENSG00000101191, DIDO1, death inducer-obliterator 1, [RH, Score=90.9, Expect=6e-18]} {Mouse: ENSMUSG00000038914, Dido1, death inducer-obliterator 1, [RH, Score=93.2, Expect=1e-18]; ENSMUSG00000048874, Phf3, PHD finger protein 3, [RH, Score=88.6, Expect=2e-17]} {Smed: dd_Smed_v6_7712_0_2, dd_Smed_v6_7712_0_2, [Score=75.1, Expect=9e-14]} {RNA1509_29481} {RNA1310_13018} {RNA815_5509}
6. MligTC455_41609 1411 29.4 Mlig455_005643, Mlig455_008677, Mlig455_008681

Neo: -

Age: Down-Up-Down

Region-enriched R5: 2.013/0.00317

 0.97 0.970 - - - - -

Mlig455_005643 {REF} {Length: 2329} {TRANSSPLICED} {RNA1509_20030} {RNA1310_15398} {RNA815_6047}

Mlig455_008677 {REF} {Length: 1876} {TRANSSPLICED} {RNA1509_20030} {RNA1310_15398, RNA1509_20030} {RNA1509_20030, RNA815_6047}

Mlig455_008681 {REF} {Length: 2131} {TRANSSPLICED} {RNA1509_20030} {RNA1310_15398} {RNA815_6047}
7. MligTC455_33267 101 2.1 Mlig455_069231

Neo: -

Age: -

 ZFYVE1 0.965 0.965 - - - - - Mlig455_069231 {REF} {Length: 5589} {TRANSSPLICED} {Pfam: FYVE zinc finger [PF01363.23, score=89.8]} {Human: ENSG00000165861, ZFYVE1, zinc finger FYVE-type containing 1, [Score=425, Expect=1e-135]} {Mouse: ENSMUSG00000042628, Zfyve1, zinc finger, FYVE domain containing 1, [Score=424, Expect=1e-135]} {Dmel: FBgn0051064, CG31064, [Score=55.1, Expect=3e-07]} {Celegans: WBGene00004101, hgrs-1, Hepatocyte Growth factor-Regulated TK Substrate (HRS) family, [Score=55.8, Expect=1e-07]} {Smed: dd_Smed_v6_7922_0_1, dd_Smed_v6_7922_0_1, [Score=311, Expect=1e-93]} {RNA1509_28482, RNA1509_52189} {RNA1310_4737.1, RNA1509_28482, RNA1509_52189} {RNA1509_28482, RNA1509_52189, RNA815_3538}
8. MligTC455_39160 68 1.42 Mlig455_045969

Neo: -

Age: -

 KLHL8 0.962 0.962 - - - - - Mlig455_045969 {REF} {Length: 5355} {TRANSSPLICED} {Pfam: Kelch motif [PF01344.27, score=235.8]; Kelch motif [PF13964.8, score=146.7]; Galactose oxidase, central domain [PF13418.8, score=89.7]; BTB/POZ domain [PF00651.33, score=86.6]; BTB And C-terminal Kelch [PF07707.17, score=85.2]; Kelch motif [PF07646.17, score=75.9]; Galactose oxidase, central domain [PF13415.8, score=65.0]; Kelch motif [PF13854.8, score=25.3]} {Human: ENSG00000145332, KLHL8, kelch like family member 8, [RH, Score=494, Expect=2e-158]} {Mouse: ENSMUSG00000029312, Klhl8, kelch-like 8, [RH, Score=489, Expect=1e-156]} {Dmel: FBgn0040230, dbo, diablo, [Score=379, Expect=4e-116]} {Celegans: WBGene00020952, kel-8, Kelch-like protein 8, [RH, Score=461, Expect=3e-145]} {Smed: dd_Smed_v6_6164_0_1, dd_Smed_v6_6164_0_1, [Score=395, Expect=6e-122]} {RNA1509_23317} {RNA1310_2332} {RNA815_4928}
9. MligTC455_30951 136 2.82 Mlig455_008420

Neo: -

Age: Down-Up-Down

 0.958 0.958 - - - - - Mlig455_008420 {REF} {Length: 3114} {Pfam: Cupin superfamily (DUF985) [PF06172.13, score=101.5]} {RNA1509_40232} {RNA1310_31259} {RNA815_14468}
10. MligTC455_21865 166 3.46 Mlig455_019581

Neo: Irradiation

Age: -

Region-enriched R5: 2.468/0.04551

 FOS 0.957 0.957 - - - - - Mlig455_019581 {REF} {Length: 4500} {Pfam: bZIP transcription factor [PF00170.23, score=45.7]; Basic region leucine zipper [PF07716.17, score=30.7]; bZIP Maf transcription factor [PF03131.19, score=23.8]} {Human: ENSG00000170345, FOS, Fos proto-oncogene, AP-1 transcription factor subunit, [RH, Score=61.2, Expect=2e-09]} {Mouse: ENSMUSG00000021250, Fos, FBJ osteosarcoma oncogene, [RH, Score=59.3, Expect=6e-09]} {Dmel: FBgn0001297, kay, kayak, [RH, Score=74.7, Expect=1e-13]} {Celegans: WBGene00001345, fos-1, Transcription factor fos-1, [Score=57.0, Expect=2e-08]} {Smed: dd_Smed_v6_8835_0_1, dd_Smed_v6_8835_0_1, [RH, Score=53.9, Expect=1e-07]} {RNA1509_24169} {RNA1310_17929.1} {RNA815_15089}
11. MligTC455_28594 49 1.02 Mlig455_013080

Neo: -

Age: Up-Up-Down

 0.957 - - - - - 0.957 Mlig455_013080 {REF} {Length: 2167} {NoTransDecoderORF} {RNA1509_57922} {RNA1310_17062} {RNA815_22796.1}
12. MligTC455_18776 85 1.78 Mlig455_049100

Neo: -

Age: Down-Down-Up

 0.956 0.956 - - - - - Mlig455_049100 {REF} {Length: 1873} {Pfam: AAA domain [PF13166.8, score=19.3]} {RNA1509_51530} {RNA1310_16595} {RNA815_17973}
13. MligTC455_19372 108 2.25 Mlig455_040134

Neo: -

Age: -

 0.956 0.956 - - - - - Mlig455_040134 {REF} {Length: 760} {NoTransDecoderORF} {RNA1509_49196} {RNA1310_22309.2} {RNA815_54078}
14. MligTC455_28952 592 12.34 Mlig455_037010

Neo: -

Age: logFC(26M/2M)=0.401

Region-enriched R4: 2.860/0.00102
Region-enriched R5: 2.505/0.00148
Region-enriched R3: 2.480/0.00869
Region-enriched R6: 2.401/0.02879

 0.956 0.956 - - - - - Mlig455_037010 {REF} {Length: 1626} {RNA1509_47002} {RNA1310_19138.2, RNA1509_47002} {RNA1509_47002, RNA815_6311.2}
15. MligTC455_42701 30 0.61 Mlig455_060802

Neo: -

Age: logFC(26M/2M)=0.299

 ABCB10 0.956 0.956 - - - - - Mlig455_060802 {REF} {Length: 3747} {TRANSSPLICED} {Pfam: ABC transporter transmembrane region [PF00664.25, score=200.6]; ABC transporter [PF00005.29, score=112.0]; RecF/RecN/SMC N terminal domain [PF02463.21, score=23.8]; AAA ATPase domain [PF13191.8, score=19.7]; P-loop containing region of AAA domain [PF13555.8, score=18.9]} {Human: ENSG00000135776, ABCB10, ATP binding cassette subfamily B member 10, [RH, Score=623, Expect=0.0]} {Mouse: ENSMUSG00000031974, Abcb10, ATP-binding cassette, sub-family B (MDR/TAP), member 10, [RH, Score=628, Expect=0.0]} {Dmel: FBgn0023536, CG3156, [RH, Score=535, Expect=0.0]} {Celegans: WBGene00001813, haf-3, HAlF transporter (PGP related), [RH, Score=468, Expect=3e-157]} {Smed: dd_Smed_v6_12570_0_1, dd_Smed_v6_12570_0_1, [RH, Score=446, Expect=3e-149]} {RNA1509_40661} {RNA1310_12689.1, RNA1509_40661} {RNA1509_40661, RNA815_25513}
16. MligTC455_48028 185 3.85 Mlig455_007274

Neo: -

Age: Down-Up-Down

Regeneration-upregulated BL: 4.108

Regeneration-enriched BL: 4.108

 SPSB4 0.956 0.956 - - - - - Mlig455_007274 {REF} {Length: 2130} {Human: ENSG00000175093, SPSB4, splA/ryanodine receptor domain and SOCS box containing 4, [Score=104, Expect=7e-27]; ENSG00000171621, SPSB1, splA/ryanodine receptor domain and SOCS box containing 1, [Score=103, Expect=4e-27]} {Mouse: ENSMUSG00000039911, Spsb1, splA/ryanodine receptor domain and SOCS box containing 1, [Score=103, Expect=2e-27]; ENSMUSG00000046997, Spsb4, splA/ryanodine receptor domain and SOCS box containing 4, [Score=103, Expect=1e-26]} {Dmel: FBgn0026238, gus, gustavus, [Score=107, Expect=5e-28]} {Celegans: WBGene00021597, spsb-1, SPSB (SPry and Socs Box) family, [Score=94.7, Expect=5e-23]} {Smed: dd_Smed_v6_9905_0_1, dd_Smed_v6_9905_0_1, [Score=77.0, Expect=8e-17]} {RNA1509_16638} {RNA1310_11847} {RNA815_5105}
17. MligTC455_51011 108 2.26 Mlig455_028317

Neo: Irradiation

Age: Up-Down-Down

 RABGAP1 0.956 0.956 - - - - - Mlig455_028317 {REF} {Length: 6575} {TRANSSPLICED} {Pfam: Rab-GTPase-TBC domain [PF00566.20, score=168.4]; Kinesin protein [PF12473.10, score=25.5]} {Human: ENSG00000011454, RABGAP1, RAB GTPase activating protein 1, [RH, Score=424, Expect=4e-131]} {Mouse: ENSMUSG00000035437, Rabgap1, RAB GTPase activating protein 1, [RH, Score=444, Expect=1e-138]} {Dmel: FBgn0035879, GAPcenA, GTPase activating protein and centrosome-associated, [RH, Score=335, Expect=5e-99]} {Celegans: WBGene00018075, tbc-11, TBC (Tre-2/Bub2/Cdc16) domain family, [RH, Score=354, Expect=1e-106]} {Smed: dd_Smed_v6_3940_0_3, dd_Smed_v6_3940_0_3, [RH, Score=401, Expect=4e-123]} {RNA1509_58329, RNA1509_8557} {RNA1310_691.1, RNA1509_58329} {RNA1509_58329, RNA815_1795}
18. MligTC455_52227 303 6.32 Mlig455_060574

Neo: -

Age: -

 MAPK10 0.956 0.956 - - - - - Mlig455_060574 {REF} {Length: 2333} {TRANSSPLICED} {Pfam: Protein kinase domain [PF00069.27, score=202.8]; Protein tyrosine and serine/threonine kinase [PF07714.19, score=99.0]; ABC1 atypical kinase-like domain [PF03109.18, score=23.3]; Lipopolysaccharide kinase (Kdo/WaaP) family [PF06293.16, score=20.1]} {Human: ENSG00000109339, MAPK10, mitogen-activated protein kinase 10, [RH, Score=588, Expect=0.0]; ENSG00000107643, MAPK8, mitogen-activated protein kinase 8, [RH, Score=579, Expect=0.0]} {Mouse: ENSMUSG00000046709, Mapk10, mitogen-activated protein kinase 10, [RH, Score=588, Expect=0.0]; ENSMUSG00000021936, Mapk8, mitogen-activated protein kinase 8, [RH, Score=579, Expect=0.0]} {Dmel: FBgn0000229, bsk, basket, [RH, Score=580, Expect=0.0]} {Celegans: WBGene00002178, jnk-1, Stress-activated protein kinase jnk-1, [RH, Score=546, Expect=0.0]} {Smed: dd_Smed_v6_5924_0_1, dd_Smed_v6_5924_0_1, [RH, Score=556, Expect=0.0]} {RNA1509_19128, RNA1509_32566} {RNA1310_10146, RNA1509_19128, RNA1509_32566} {RNA1509_19128, RNA1509_32566, RNA815_12041}
19. MligTC455_15249 717 14.93 Mlig455_066749

Neo: -

Age: -

 RBM12 0.955 0.955 - - - - - Mlig455_066749 {REF} {Length: 3255} {TRANSSPLICED} {Pfam: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) [PF00076.24, score=27.4]} {Human: ENSG00000244462, RBM12, RNA binding motif protein 12, [Score=94.0, Expect=6e-19]; ENSG00000183808, RBM12B, RNA binding motif protein 12B, [Score=89.4, Expect=2e-17]} {Mouse: ENSMUSG00000089824, Rbm12, RNA binding motif protein 12, [Score=94.7, Expect=3e-19]; ENSMUSG00000098950, Gm28036, predicted gene, 28036, [Score=92.8, Expect=8e-19]} {Dmel: FBgn0035235, CG7879, [RH, Score=117, Expect=1e-26]} {Celegans: WBGene00013703, Y106G6D.7, [RH, Score=98.2, Expect=1e-20]} {Smed: dd_Smed_v6_5908_0_1, dd_Smed_v6_5908_0_1, [RH, Score=106, Expect=2e-23]} {RNA1509_7941} {RNA1310_4040.1} {RNA815_10772}
20. MligTC455_29402 182 3.79 Mlig455_063253

Neo: -

Age: Up-Down-Down, logFC(26M/2M)=-0.319

 PSD3 0.955 - - - - - 0.955 Mlig455_063253 {REF} {Length: 5600} {Pfam: Sec7 domain [PF01369.22, score=124.2]; Pleckstrin homology domain [PF15410.8, score=93.2]; PH domain [PF00169.31, score=40.2]} {Human: ENSG00000156011, PSD3, pleckstrin and Sec7 domain containing 3, [RH, Score=266, Expect=4e-77]} {Mouse: ENSMUSG00000030465, Psd3, pleckstrin and Sec7 domain containing 3, [RH, Score=263, Expect=4e-80]} {Dmel: FBgn0051158, Efa6, Exchange factor for Arf 6, [RH, Score=326, Expect=6e-97]} {Celegans: WBGene00013223, efa-6, Exchange factor for Arf-6, [Score=234, Expect=3e-68]} {Smed: dd_Smed_v6_9018_0_1, dd_Smed_v6_9018_0_1, [RH, Score=231, Expect=4e-65]} {RNA1509_37014, RNA1509_42489} {RNA1310_9417, RNA1509_37014, RNA1509_42489} {RNA1509_37014, RNA1509_42489, RNA815_7053}
21. MligTC455_50900 133 2.76 Mlig455_041030

Neo: -

Age: -

 NEK7 0.955 0.955 - - - - - Mlig455_041030 {REF} {Length: 1887} {TRANSSPLICED} {Pfam: Protein kinase domain [PF00069.27, score=219.1]; Protein tyrosine and serine/threonine kinase [PF07714.19, score=160.1]; Kinase-like [PF14531.8, score=25.3]; Fungal protein kinase [PF17667.3, score=23.1]} {Human: ENSG00000151414, NEK7, NIMA related kinase 7, [RH, Score=473, Expect=1e-169]} {Mouse: ENSMUSG00000026393, Nek7, NIMA (never in mitosis gene a)-related expressed kinase 7, [RH, Score=473, Expect=1e-169]} {Dmel: FBgn0029970, Nek2, [Score=184, Expect=5e-53]} {Celegans: WBGene00008956, nekl-3, Serine/threonine-protein kinase nekl-3, [RH, Score=426, Expect=2e-151]} {Smed: dd_Smed_v6_8347_0_2, dd_Smed_v6_8347_0_2, [RH, Score=461, Expect=2e-165]} {RNA1509_12360} {RNA1310_14883.1} {RNA815_3869.1}
22. MligTC455_51289 116 2.42 Mlig455_030637

Neo: -

Age: -

Region-enriched R4: 3.680/0.01034
Region-enriched R5: 2.324/0.03635

 0.955 0.955 - - - - - Mlig455_030637 {REF} {Length: 1703} {TRANSSPLICED} {Pfam: Transmembrane family 220, helix [PF15071.8, score=74.2]} {RNA1509_52987} {RNA1310_37259, RNA1509_52987} {RNA1509_52987, RNA815_33266.1}
23. MligTC455_00722 98 2.04 Mlig455_029527

Neo: -

Age: -

 0.954 0.954 - - - - - Mlig455_029527 {REF} {Length: 63} {NoTransDecoderORF}
24. MligTC455_33773 156 3.25 Mlig455_029342

Neo: Int S/G2/M

Age: -

Region-enriched R5: 3.115/0.00124

 ZNF383 0.953 0.953 - - - - - Mlig455_029342 {REF} {Length: 1584} {TRANSSPLICED} {Pfam: Zinc-finger double domain [PF13465.8, score=220.6]; Zinc finger, C2H2 type [PF00096.28, score=141.7]; C2H2-type zinc finger [PF13894.8, score=120.7]; C2H2-type zinc finger [PF13912.8, score=83.2]; Zinc-finger double-stranded RNA-binding [PF12171.10, score=78.4]; Zinc-finger of C2H2 type [PF12874.9, score=58.1]; Zinc finger C2H2-type, 3 repeats [PF18868.3, score=35.9]; zinc-finger C2H2-type [PF16622.7, score=33.9]; Ubiquitin-Binding Zinc Finger [PF18439.3, score=30.1]; KIAA1045 RING finger [PF16744.7, score=29.3]; AN1-like Zinc finger [PF01428.18, score=29.2]; BolA-like protein [PF01722.20, score=28.8]; BED zinc finger [PF02892.17, score=27.6]; Zinc ribbon domain [PF09723.12, score=25.4]; Family of unknown function (DUF5830) [PF19148.2, score=23.0]; zinc-ribbon family [PF17032.7, score=22.5]; CB1 cannabinoid receptor-interacting protein 1 [PF15043.8, score=20.0]; Family of unknown function (DUF5810) [PF19126.2, score=19.4]; C2H2 type zinc-finger (2 copies) [PF12756.9, score=19.3]; Zinc-finger domain [PF10276.11, score=18.6]} {Human: ENSG00000188283, ZNF383, zinc finger protein 383, [Score=275, Expect=1e-88]; ENSG00000198939, ZFP2, ZFP2 zinc finger protein, [Score=271, Expect=2e-87]; ENSG00000197050, ZNF420, zinc finger protein 420, [Score=268, Expect=3e-85]; ENSG00000171827, ZNF570, zinc finger protein 570, [Score=268, Expect=2e-84]; ENSG00000124613, ZNF391, zinc finger protein 391, [Score=267, Expect=6e-87]; ENSG00000251247, ZNF345, zinc finger protein 345, [Score=266, Expect=6e-85]; ENSG00000196263, ZNF471, zinc finger protein 471, [Score=265, Expect=6e-83]; ENSG00000168661, ZNF30, zinc finger protein 30, [Score=265, Expect=5e-83]; ENSG00000185869, ZNF829, zinc finger protein 829, [Score=265, Expect=4e-85]; ENSG00000196081, ZNF724, zinc finger protein 724, [Score=263, Expect=3e-82]; ENSG00000197016, ZNF470, zinc finger protein 470, [Score=262, Expect=5e-81]; ENSG00000283009, ZNF436, zinc finger protein 436, [Score=262, Expect=2e-83]; ENSG00000125945, ZNF436, zinc finger protein 436, [Score=262, Expect=2e-83]; ENSG00000196357, ZNF565, zinc finger protein 565, [Score=262, Expect=8e-83]} {Mouse: ENSMUSG00000099689, Zfp383, zinc finger protein 383, [Score=273, Expect=7e-88]; ENSMUSG00000049321, Zfp2, zinc finger protein 2, [Score=271, Expect=2e-87]; ENSMUSG00000058402, Zfp420, zinc finger protein 420, [Score=269, Expect=2e-85]; ENSMUSG00000078906, Gm14444, predicted gene 14444, [Score=266, Expect=8e-86]; ENSMUSG00000059897, Zfp930, zinc finger protein 930, [Score=266, Expect=1e-85]; ENSMUSG00000078865, Gm14406, predicted gene 14406, [Score=266, Expect=7e-86]; ENSMUSG00000078902, Gm14443, predicted gene 14443, [Score=264, Expect=7e-83]; ENSMUSG00000078875, Gm14419, predicted gene 14419, [Score=264, Expect=3e-83]; ENSMUSG00000095648, Gm2004, predicted gene 2004, [Score=264, Expect=3e-83]; ENSMUSG00000037007, Zfp113, zinc finger protein 113, [Score=262, Expect=5e-84]; ENSMUSG00000078877, Gm14295, predicted gene 14295, [Score=261, Expect=4e-80]; ENSMUSG00000072623, Zfp9, zinc finger protein 9, [Score=260, Expect=3e-83]; ENSMUSG00000055305, Zfp93, zinc finger protein 93, [Score=260, Expect=5e-81]} {Dmel: FBgn0032295, CG12299, [Score=202, Expect=9e-59]} {Celegans: WBGene00012639, fezf-1, FEZ Family zinc finger protein, [Score=149, Expect=2e-43]} {Smed: dd_Smed_v6_14824_0_1, dd_Smed_v6_14824_0_1, [Score=162, Expect=7e-47]} {RNA1509_7336} {RNA1310_55319} {RNA815_11426.2}
25. MligTC455_50902 114 2.37 Mlig455_041191

Neo: -

Age: -

 0.953 0.953 - - - - - Mlig455_041191 {REF} {Length: 1000} {Smed: dd_Smed_v6_9041_0_1, dd_Smed_v6_9041_0_1, [Score=44.7, Expect=8e-07]} {RNA1509_12360} {RNA1310_14883.2} {RNA815_3869.1}
26. MligTC455_17527 350 7.29 Mlig455_035180

Neo: -

Age: Up-Down-Down, logFC(26M/2M)=-0.457

Region-enriched R3: 3.704/0.00032

 SLC1A6 0.952 0.952 - - - - - Mlig455_035180 {REF} {Length: 1854} {Pfam: Sodium:dicarboxylate symporter family [PF00375.20, score=298.7]} {Human: ENSG00000105143, SLC1A6, solute carrier family 1 member 6, [Score=226, Expect=1e-66]} {Mouse: ENSMUSG00000020142, Slc1a4, solute carrier family 1 (glutamate/neutral amino acid transporter), member 4, [Score=230, Expect=1e-68]; ENSMUSG00000005089, Slc1a2, solute carrier family 1 (glial high affinity glutamate transporter), member 2, [Score=223, Expect=2e-65]; ENSMUSG00000005357, Slc1a6, solute carrier family 1 (high affinity aspartate/glutamate transporter), member 6, [Score=219, Expect=3e-64]} {Dmel: FBgn0026438, Eaat2, Excitatory amino acid transporter 2, [Score=222, Expect=2e-65]} {Celegans: WBGene00001623, glt-5, Amino acid transporter, [Score=245, Expect=3e-75]} {Smed: dd_Smed_v6_1106_0_1, dd_Smed_v6_1106_0_1, [Score=249, Expect=7e-77]} {RNA1509_34565} {RNA1310_17641.1, RNA1509_34565} {RNA1509_34565, RNA815_6804}
27. MligTC455_43702 231 4.82 Mlig455_023865

Neo: Irradiation

Age: -

 SLIT1 0.952 0.952 - - - - - Mlig455_023865 {REF} {Length: 4963} {Pfam: Leucine rich repeat [PF13855.8, score=60.6]; Leucine Rich repeats (2 copies) [PF12799.9, score=29.2]; Leucine Rich Repeat [PF00560.35, score=25.9]} {Human: ENSG00000187122, SLIT1, slit guidance ligand 1, [Score=84.7, Expect=6e-17]} {Mouse: ENSMUSG00000036334, Igsf10, immunoglobulin superfamily, member 10, [Score=80.5, Expect=3e-15]; ENSMUSG00000025020, Slit1, slit guidance ligand 1, [Score=78.6, Expect=1e-14]} {Dmel: FBgn0034083, lbk, lambik, [Score=58.2, Expect=2e-08]} {Smed: dd_Smed_v6_9128_0_1, dd_Smed_v6_9128_0_1, [RH, Score=134, Expect=1e-33]} {RNA1509_13979, RNA1509_41843, RNA1509_57264} {RNA1310_10154.1, RNA1509_41843, RNA1509_57264} {RNA1509_41843, RNA1509_57264, RNA815_4611}
28. MligTC455_17891 471 9.82 Mlig455_045940

Neo: -

Age: -

Region-enriched R4: 1.761/0.00497
Region-enriched R5: 1.062/0.03282

 DCAF10 0.951 0.951 - - - - - Mlig455_045940 {REF} {Length: 2619} {Human: ENSG00000122741, DCAF10, DDB1 and CUL4 associated factor 10, [RH, Score=89.0, Expect=1e-18]} {Mouse: ENSMUSG00000035572, Dcaf10, DDB1 and CUL4 associated factor 10, [RH, Score=74.7, Expect=9e-14]} {Dmel: FBgn0039601, CG1523, [RH, Score=87.4, Expect=6e-18]} {RNA1509_41304, RNA1509_46888} {RNA1310_2332, RNA1509_41304, RNA1509_46888} {RNA1509_41304, RNA1509_46888, RNA815_18927}
29. MligTC455_23515 3110 64.78 Mlig455_014201, Mlig455_014219, Mlig455_070571

Neo: -

Age: -

Region-enriched R4: 1.097/0.00291

 ARHGAP12 0.951 0.951 - - - - -

Mlig455_014201 {REF} {Length: 2854} {TRANSSPLICED} {Pfam: RhoGAP domain [PF00620.29, score=66.3]} {Human: ENSG00000165322, ARHGAP12, Rho GTPase activating protein 12, [Score=75.5, Expect=3e-14]} {Mouse: ENSMUSG00000034255, Arhgap27, Rho GTPase activating protein 27, [Score=85.9, Expect=8e-18]} {Celegans: WBGene00008006, tag-325, WW domain-containing protein tag-325, [Score=66.6, Expect=3e-12]} {Smed: dd_Smed_v6_3975_0_1, dd_Smed_v6_3975_0_1, [Score=58.2, Expect=3e-09]} {RNA1509_35177} {RNA1310_26661.2} {RNA815_12168.1}

Mlig455_014219 {REF} {Length: 1225} {NoTransDecoderORF} {RNA1509_35177} {RNA1310_26661.2} {RNA815_12168.1}

Mlig455_070571 {REF} {Length: 1394} {NoTransDecoderORF} {RNA1509_31135, RNA1509_35177, RNA1509_42492, RNA1509_52320} {RNA1310_26661.1, RNA1509_31135, RNA1509_35177, RNA1509_42492, RNA1509_52320} {RNA1509_31135, RNA1509_35177, RNA1509_42492, RNA1509_52320, RNA815_12168.1}
30. MligTC455_35955 122 2.54 Mlig455_026547

Neo: -

Age: logFC(26M/2M)=0.689

 HIGD2A 0.951 0.951 - - - - - Mlig455_026547 {REF} {Length: 3183} {TRANSSPLICED} {Pfam: Hypoxia induced protein conserved region [PF04588.15, score=62.4]} {Human: ENSG00000146066, HIGD2A, HIG1 hypoxia inducible domain family member 2A, [RH, Score=56.6, Expect=7e-11]; ENSG00000175202, HIGD2B, HIG1 hypoxia inducible domain family member 2B, [RH, Score=54.3, Expect=5e-10]} {Mouse: ENSMUSG00000025868, Higd2a, HIG1 domain family, member 2A, [RH, Score=53.9, Expect=5e-10]} {Dmel: FBgn0030743, CG9921, [RH, Score=56.6, Expect=3e-11]} {Celegans: WBGene00011859, T20D3.6, [RH, Score=50.4, Expect=1e-08]} {Smed: dd_Smed_v6_4375_0_1, dd_Smed_v6_4375_0_1, [RH, Score=55.8, Expect=5e-11]} {RNA1509_18135} {RNA1310_2701, RNA1509_18135} {RNA1509_18135, RNA815_12023}
31. MligTC455_22474 660 13.76 Mlig455_001924

Neo: Int S/G2/M

Age: -

Region-enriched R4: 3.509/0.00004

 DHRS1 0.95 0.950 - - - - - Mlig455_001924 {REF} {Length: 1486} {TRANSSPLICED} {Pfam: short chain dehydrogenase [PF00106.27, score=124.1]; Enoyl-(Acyl carrier protein) reductase [PF13561.8, score=98.4]; KR domain [PF08659.12, score=29.1]} {Human: ENSG00000157379, DHRS1, dehydrogenase/reductase 1, [RH, Score=296, Expect=2e-99]; ENSG00000284868, DHRS1, dehydrogenase/reductase 1, [RH, Score=296, Expect=2e-99]} {Mouse: ENSMUSG00000002332, Dhrs1, dehydrogenase/reductase (SDR family) member 1, [RH, Score=302, Expect=5e-102]} {Dmel: FBgn0040349, CG3699, [Score=84.7, Expect=6e-19]} {Celegans: WBGene00000973, dhs-9, DeHydrogenases, Short chain, [RH, Score=318, Expect=1e-108]} {Smed: dd_Smed_v6_956_0_1, dd_Smed_v6_956_0_1, [Score=87.0, Expect=4e-19]} {RNA1509_18311, RNA1509_58296} {RNA1310_19029.1, RNA1509_58296} {RNA1509_58296, RNA815_9160}
32. MligTC455_31621 181 3.76 Mlig455_027745

Neo: -

Age: -

 0.95 0.950 - - - - - Mlig455_027745 {REF} {Length: 2899} {Pfam: Zinc finger, C2H2 type [PF00096.28, score=39.8]; C2H2-type zinc finger [PF13894.8, score=25.4]; C2HE / C2H2 / C2HC zinc-binding finger [PF16278.7, score=21.0]} {Dmel: FBgn0003963, ush, u-shaped, [Score=59.3, Expect=1e-08]} {RNA1509_20943} {RNA1310_6862} {RNA815_17333}
33. MligTC455_37549 88 1.83 Mlig455_048739

Neo: -

Age: Down-Down-Down, logFC(26M/2M)=-2.657

 0.95 0.950 - - - - - Mlig455_048739 {REF} {Length: 1455} {TRANSSPLICED} {RNA1509_32517} {RNA1310_30798.1, RNA1509_32517} {RNA1509_32517, RNA815_17198}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA