TomoSeq data search

Data search

Results for MligTC455_51586

Cluster

Total UMI counts

Global CPM

Transcripts

Categories

Human homolog

Annotation

MligTC455_51586

2967

61.80

Mlig455_020711

Neo: -

Age: -

GPC6

Mlig455_020711 {REF} {Length: 5293} {TRANSSPLICED} {Pfam: Glypican [PF01153.21, score=258.7]} {Human: ENSG00000183098, GPC6, glypican 6, [RH, Score=172, Expect=8e-45]; ENSG00000076716, GPC4, glypican 4, [RH, Score=170, Expect=4e-44]} {Mouse: ENSMUSG00000058571, Gpc6, glypican 6, [RH, Score=171, Expect=8e-45]; ENSMUSG00000034220, Gpc1, glypican 1, [RH, Score=164, Expect=2e-42]} {RNA1509_15748, RNA1509_28534, RNA1509_31804, RNA1509_52825} {RNA1310_3104.2, RNA1509_15748, RNA1509_31804, RNA1509_52825} {RNA1509_15748, RNA1509_31804, RNA1509_52825, RNA815_1362}

Cumulative graph for MligTC455_51586

Region-enriched expression

Region	logFC	logCPM	Pvalue	FDR	Specificity
RegionR1	-0.961	6.05	0.13865	0.74477
RegionR2	0.457	6.05	0.15064	0.48469
RegionR3	-0.021	6.05	0.93728	1.00000
RegionR4	-0.711	6.05	0.02454	0.11782
RegionR5	-0.5	6.05	0.05661	0.20480
RegionR6	0.438	6.05	0.09228	0.55871
RegionR7	0.352	6.05	0.23343	0.85746
RegionR8	0.945	6.05	0.00313	0.09737

Regeneration-enriched expression

Region	logFC	logCPM	PValue	FDR	Specificity
RegenerationR1	-0.343	6.05	0.73229	1.00000
RegenerationR2	-0.097	6.05	0.75054	0.97351
RegenerationR3	0.214	6.05	0.51113	0.86193
RegenerationR4	0.191	6.05	0.56567	0.89920
RegenerationR5	0.435	6.05	0.16934	0.59633
RegenerationR6	0.182	6.05	0.56785	0.85031
RegenerationBL	0.004	6.05	0.99043	1.00000
RegenerationTP	-0.656	6.05	0.06160	0.40188

Genes with expression patterns similar to MligTC455_51586

Nr.	Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Σ Spearman correlations	Int1	Int2	Int3	Reg1	Reg2	Reg3	Annotation
1.	MligTC455_51586	2967	61.8	Mlig455_020711	Neo: - Age: -	GPC6	6	1.000	1.000	1.000	1.000	1.000	1.000	Mlig455_020711 {REF} {Length: 5293} {TRANSSPLICED} {Pfam: Glypican [PF01153.21, score=258.7]} {Human: ENSG00000183098, GPC6, glypican 6, [RH, Score=172, Expect=8e-45]; ENSG00000076716, GPC4, glypican 4, [RH, Score=170, Expect=4e-44]} {Mouse: ENSMUSG00000058571, Gpc6, glypican 6, [RH, Score=171, Expect=8e-45]; ENSMUSG00000034220, Gpc1, glypican 1, [RH, Score=164, Expect=2e-42]} {RNA1509_15748, RNA1509_28534, RNA1509_31804, RNA1509_52825} {RNA1310_3104.2, RNA1509_15748, RNA1509_31804, RNA1509_52825} {RNA1509_15748, RNA1509_31804, RNA1509_52825, RNA815_1362}
2.	MligTC455_51587	2263	47.14	Mlig455_020781	Neo: - Age: - Region-enriched R8: 1.404/0.01185	GPC6	5.361	0.805	0.913	0.858	0.870	0.991	0.924	Mlig455_020781 {REF} {Length: 6061} {TRANSSPLICED} {Pfam: Glypican [PF01153.21, score=258.6]} {Human: ENSG00000183098, GPC6, glypican 6, [RH, Score=172, Expect=7e-45]} {Mouse: ENSMUSG00000058571, Gpc6, glypican 6, [RH, Score=171, Expect=9e-45]; ENSMUSG00000034220, Gpc1, glypican 1, [RH, Score=164, Expect=2e-42]} {RNA1509_28534, RNA1509_2898, RNA1509_32937} {RNA1310_3104.2, RNA1509_28534, RNA1509_2898, RNA1509_32937} {RNA1509_28534, RNA1509_2898, RNA1509_32937, RNA815_1362}
3.	MligTC455_44057	140	2.92	Mlig455_007132	Neo: - Age: -	PBX4	1.687	-	-	0.736	-	0.951	-	Mlig455_007132 {REF} {Length: 2410} {Pfam: Homeobox KN domain [PF05920.13, score=45.0]; Homeodomain [PF00046.31, score=44.6]} {Human: ENSG00000105717, PBX4, PBX homeobox 4, [Score=57.0, Expect=4e-08]; ENSG00000225987, PBX2, PBX homeobox 2, [Score=55.8, Expect=1e-07]; ENSG00000224952, PBX2, PBX homeobox 2, [Score=55.8, Expect=1e-07]; ENSG00000206315, PBX2, PBX homeobox 2, [Score=55.8, Expect=1e-07]; ENSG00000204304, PBX2, PBX homeobox 2, [Score=55.8, Expect=1e-07]; ENSG00000232005, PBX2, PBX homeobox 2, [Score=55.8, Expect=1e-07]; ENSG00000236353, PBX2, PBX homeobox 2, [Score=55.8, Expect=1e-07]; ENSG00000237344, PBX2, PBX homeobox 2, [Score=55.8, Expect=1e-07]; ENSG00000185630, PBX1, PBX homeobox 1, [Score=55.1, Expect=2e-07]} {Mouse: ENSMUSG00000034673, Pbx2, pre B cell leukemia homeobox 2, [Score=55.5, Expect=8e-08]; ENSMUSG00000031860, Pbx4, pre B cell leukemia homeobox 4, [Score=55.1, Expect=1e-07]; ENSMUSG00000052534, Pbx1, pre B cell leukemia homeobox 1, [Score=55.1, Expect=1e-07]; ENSMUSG00000038718, Pbx3, pre B cell leukemia homeobox 3, [Score=53.1, Expect=4e-07]} {Dmel: FBgn0000611, exd, extradenticle, [Score=56.2, Expect=4e-08]} {Celegans: WBGene00000443, ceh-20, Homeobox protein ceh-20, [Score=49.7, Expect=3e-06]} {Smed: dd_Smed_v6_7324_0_1, dd_Smed_v6_7324_0_1, [RH, Score=98.6, Expect=4e-22]} {RNA1310_13235} {RNA815_16233}
4.	MligTC455_03566	521	10.86	Mlig455_056152	Neo: - Age: Down-Down-Up	DDX46	0.969	-	-	-	-	0.969	-	Mlig455_056152 {REF} {Length: 4411} {Pfam: DEAD/DEAH box helicase [PF00270.31, score=165.7]; Helicase conserved C-terminal domain [PF00271.33, score=91.1]} {Human: ENSG00000145833, DDX46, DEAD-box helicase 46, [RH, Score=762, Expect=0.0]} {Mouse: ENSMUSG00000021500, Ddx46, DEAD (Asp-Glu-Ala-Asp) box polypeptide 46, [RH, Score=766, Expect=0.0]} {Dmel: FBgn0030631, CG6227, [RH, Score=731, Expect=0.0]} {Celegans: WBGene00018776, F53H1.1, [RH, Score=621, Expect=0.0]} {Smed: dd_Smed_v6_3181_0_1, dd_Smed_v6_3181_0_1, [RH, Score=781, Expect=0.0]} {RNA1509_14771} {RNA1310_1133.1, RNA1509_14771} {RNA1509_14771, RNA815_5757}
5.	MligTC455_43747	186	3.88	Mlig455_019998	Neo: - Age: - Region-enriched R2: 3.849/0.00050	GLRA3	0.968	-	-	-	-	0.968	-	Mlig455_019998 {REF} {Length: 2977} {Pfam: Neurotransmitter-gated ion-channel ligand binding domain [PF02931.25, score=148.5]; Neurotransmitter-gated ion-channel transmembrane region [PF02932.18, score=117.6]} {Human: ENSG00000145451, GLRA3, glycine receptor alpha 3, [RH, Score=337, Expect=2e-111]; ENSG00000145888, GLRA1, glycine receptor alpha 1, [RH, Score=332, Expect=1e-109]} {Mouse: ENSMUSG00000038257, Glra3, glycine receptor, alpha 3 subunit, [RH, Score=338, Expect=1e-111]; ENSMUSG00000000263, Glra1, glycine receptor, alpha 1 subunit, [RH, Score=330, Expect=5e-109]} {Dmel: FBgn0024963, GluClalpha, [RH, Score=292, Expect=2e-94]} {Celegans: WBGene00001586, ggr-1, Glycine receptor subunit beta-type 4, [RH, Score=260, Expect=1e-81]} {Smed: dd_Smed_v6_11342_0_1, dd_Smed_v6_11342_0_1, [Score=254, Expect=4e-80]} {RNA1509_22140} {RNA1310_19557.2} {RNA815_6481}
6.	MligTC455_45339	2696	56.16	Mlig455_052793	Neo: - Age: - Regeneration-upregulated BL: 1.238 Regeneration-enriched BL: 1.238		0.955	-	-	-	0.955	-	-	Mlig455_052793 {REF} {Length: 4378} {TRANSSPLICED} {RNA1509_2931, RNA1509_3619, RNA1509_36191} {RNA1310_9318.1, RNA1509_2931, RNA1509_3619, RNA1509_36191} {RNA1509_2931, RNA1509_3619, RNA1509_36191, RNA815_5029.1}
7.	MligTC455_32810	1118	23.3	Mlig455_053373	Neo: - Age: -	WLS	0.954	-	-	-	0.954	-	-	Mlig455_053373 {REF} {Length: 3703} {TRANSSPLICED} {Pfam: Wnt-binding factor required for Wnt secretion [PF06664.14, score=249.2]} {Human: ENSG00000116729, WLS, wntless Wnt ligand secretion mediator, [RH, Score=404, Expect=4e-134]} {Mouse: ENSMUSG00000028173, Wls, wntless WNT ligand secretion mediator, [RH, Score=396, Expect=2e-131]} {Dmel: FBgn0036141, wls, wntless, [RH, Score=400, Expect=9e-133]} {Celegans: WBGene00003246, mig-14, Protein wntless homolog, [RH, Score=309, Expect=6e-98]} {Smed: dd_Smed_v6_9546_0_1, dd_Smed_v6_9546_0_1, [RH, Score=325, Expect=1e-105]} {RNA1509_11679, RNA1509_47528} {RNA1310_8508, RNA1509_11679, RNA1509_47528} {RNA1509_11679, RNA1509_47528, RNA815_6300}
8.	MligTC455_48014	1089	22.69	Mlig455_020705	Neo: - Age: - Regeneration-upregulated BL: 1.643 Regeneration-enriched BL: 1.643	TMED5	0.952	-	-	-	0.952	-	-	Mlig455_020705 {REF} {Length: 2298} {TRANSSPLICED} {Pfam: emp24/gp25L/p24 family/GOLD [PF01105.26, score=90.2]} {Human: ENSG00000117500, TMED5, transmembrane p24 trafficking protein 5, [RH, Score=89.7, Expect=6e-20]} {Mouse: ENSMUSG00000063406, Tmed5, transmembrane p24 trafficking protein 5, [RH, Score=89.4, Expect=7e-20]} {Dmel: FBgn0264389, opm, opossum, [RH, Score=75.5, Expect=3e-15]} {Celegans: WBGene00010670, K08E4.6, [RH, Score=91.7, Expect=6e-21]} {Smed: dd_Smed_v6_3127_0_1, dd_Smed_v6_3127_0_1, [RH, Score=99.4, Expect=3e-23]} {RNA1509_5946} {RNA1310_10367} {RNA815_5040.1}
9.	MligTC455_53474	1252	26.08	Mlig455_036568	Neo: - Age: logFC(26M/2M)=0.466	TLE1	0.952	-	-	-	-	0.952	-	Mlig455_036568 {REF} {Length: 3871} {Pfam: Groucho/TLE N-terminal Q-rich domain [PF03920.17, score=184.3]; WD domain, G-beta repeat [PF00400.34, score=68.0]; Anaphase-promoting complex subunit 4 WD40 domain [PF12894.9, score=43.6]} {Human: ENSG00000196781, TLE1, transducin like enhancer of split 1, [Score=566, Expect=0.0]; ENSG00000106829, TLE4, transducin like enhancer of split 4, [Score=565, Expect=0.0]; ENSG00000140332, TLE3, transducin like enhancer of split 3, [Score=563, Expect=0.0]; ENSG00000065717, TLE2, transducin like enhancer of split 2, [Score=546, Expect=0.0]} {Mouse: ENSMUSG00000024642, Tle4, transducin-like enhancer of split 4, [Score=565, Expect=0.0]; ENSMUSG00000008305, Tle1, transducin-like enhancer of split 1, [Score=565, Expect=0.0]; ENSMUSG00000032280, Tle3, transducin-like enhancer of split 3, [Score=563, Expect=0.0]; ENSMUSG00000034771, Tle2, transducin-like enhancer of split 2, [Score=542, Expect=0.0]} {Dmel: FBgn0001139, gro, groucho, [Score=570, Expect=0.0]} {Celegans: WBGene00006773, unc-37, Transcription factor unc-37, [Score=406, Expect=1e-131]} {Smed: dd_Smed_v6_4112_0_1, dd_Smed_v6_4112_0_1, [Score=668, Expect=0.0]} {RNA1509_4766} {RNA1310_6051} {RNA815_7108.1}

Berezikov Lab - 2020-2021 © ERIBA