M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_51610

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_51610 580 12.09 Mlig455_023608

Neo: -

Age: -

 DERA Mlig455_023608 {REF} {Length: 2408} {TRANSSPLICED} {Pfam: DeoC/LacD family aldolase [PF01791.11, score=91.5]} {Human: ENSG00000023697, DERA, deoxyribose-phosphate aldolase, [RH, Score=293, Expect=4e-98]} {Mouse: ENSMUSG00000030225, Dera, deoxyribose-phosphate aldolase (putative), [RH, Score=300, Expect=8e-101]} {Dmel: FBgn0033735, CG8525, [RH, Score=277, Expect=2e-91]} {Celegans: WBGene00017283, F09E5.3, Putative deoxyribose-phosphate aldolase, [RH, Score=218, Expect=6e-69]} {Smed: dd_Smed_v6_8440_0_1, dd_Smed_v6_8440_0_1, [RH, Score=288, Expect=2e-96]} {RNA1509_17749} {RNA1310_29973, RNA1509_17749} {RNA1509_17749, RNA815_13722}

Cumulative graph for MligTC455_51610

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -0.36 3.998 0.74486 1.00000
RegionR2 -0.121 3.998 0.81935 1.00000
RegionR3 0.5 3.998 0.19139 0.72860
RegionR4 -0.083 3.998 0.87380 1.00000
RegionR5 0.261 3.998 0.45187 0.81363
RegionR6 -0.166 3.998 0.68782 1.00000
RegionR7 -0.011 3.998 0.98233 1.00000
RegionR8 -0.019 3.998 0.97456 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -5.257 3.998 0.30603 0.99987
RegenerationR2 -0.229 3.998 0.64205 0.93218
RegenerationR3 -0.244 3.998 0.62622 0.91855
RegenerationR4 0.23 3.998 0.64747 0.93189
RegenerationR5 -0.1 3.998 0.83201 0.99819
RegenerationR6 1.203 3.998 0.01229 0.13631
RegenerationBL 0.655 3.998 0.29047 0.65249
RegenerationTP -0.862 3.998 0.23687 0.68263


Genes with expression patterns similar to MligTC455_51610

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_51610 580 12.09 Mlig455_023608

Neo: -

Age: -

 DERA 6 1.000 1.000 1.000 1.000 1.000 1.000 Mlig455_023608 {REF} {Length: 2408} {TRANSSPLICED} {Pfam: DeoC/LacD family aldolase [PF01791.11, score=91.5]} {Human: ENSG00000023697, DERA, deoxyribose-phosphate aldolase, [RH, Score=293, Expect=4e-98]} {Mouse: ENSMUSG00000030225, Dera, deoxyribose-phosphate aldolase (putative), [RH, Score=300, Expect=8e-101]} {Dmel: FBgn0033735, CG8525, [RH, Score=277, Expect=2e-91]} {Celegans: WBGene00017283, F09E5.3, Putative deoxyribose-phosphate aldolase, [RH, Score=218, Expect=6e-69]} {Smed: dd_Smed_v6_8440_0_1, dd_Smed_v6_8440_0_1, [RH, Score=288, Expect=2e-96]} {RNA1509_17749} {RNA1310_29973, RNA1509_17749} {RNA1509_17749, RNA815_13722}
2. MligTC455_48054 142 2.96 Mlig455_020670

Neo: -

Age: Up-Down-Down

 1.81 - - 0.855 - 0.955 - Mlig455_020670 {REF} {Length: 5197} {Pfam: PX domain [PF00787.26, score=33.9]} {RNA1509_29567} {RNA1310_1542.1} {RNA815_21449}
3. MligTC455_50606 286 5.96 Mlig455_048997, Mlig455_067752

Neo: Int S/G2/M

Age: -

 CDC45 1.682 - - 0.725 - 0.957 -

Mlig455_048997 {REF} {Length: 2916} {TRANSSPLICED} {Pfam: CDC45-like protein [PF02724.16, score=218.2]} {Human: ENSG00000093009, CDC45, cell division cycle 45, [Score=253, Expect=3e-76]} {Mouse: ENSMUSG00000000028, Cdc45, cell division cycle 45, [Score=237, Expect=2e-70]} {Dmel: FBgn0026143, CDC45L, [Score=244, Expect=2e-73]} {Celegans: WBGene00009372, evl-18, [RH, Score=111, Expect=9e-26]} {Smed: dd_Smed_v6_16942_0_1, dd_Smed_v6_16942_0_1, [Score=198, Expect=2e-56]} {RNA1509_27402} {RNA1310_23745.1} {RNA815_20917}

Mlig455_067752 {REF} {Length: 3329} {TRANSSPLICED} {Pfam: CDC45-like protein [PF02724.16, score=222.9]} {Human: ENSG00000093009, CDC45, cell division cycle 45, [RH, Score=280, Expect=1e-86]} {Mouse: ENSMUSG00000000028, Cdc45, cell division cycle 45, [RH, Score=265, Expect=5e-81]} {Dmel: FBgn0026143, CDC45L, [RH, Score=272, Expect=6e-84]} {Celegans: WBGene00009372, evl-18, [RH, Score=121, Expect=6e-29]} {Smed: dd_Smed_v6_16942_0_1, dd_Smed_v6_16942_0_1, [RH, Score=211, Expect=5e-61]} {RNA1509_27402} {RNA1310_23745.1} {RNA815_20917}
4. MligTC455_26244 28 0.57 Mlig455_066470

Neo: Int S/G2/M

Age: -

 0.973 - - - 0.973 - - Mlig455_066470 {REF} {Length: 1045} {NoTransDecoderORF} {RNA1509_23272} {RNA1310_33493} {RNA815_15952}
5. MligTC455_46921 2034 42.37 Mlig455_066083, Mlig455_066129

Neo: Int S/G2/M

Age: logFC(26M/2M)=0.247

 MRPL46 0.97 - - - - 0.970 -

Mlig455_066083 {REF} {Length: 866} {TRANSSPLICED} {Pfam: 39S mitochondrial ribosomal protein L46 [PF11788.10, score=24.5]} {Human: ENSG00000259494, MRPL46, mitochondrial ribosomal protein L46, [RH, Score=56.2, Expect=7e-09]} {Mouse: ENSMUSG00000030612, Mrpl46, mitochondrial ribosomal protein L46, [RH, Score=52.8, Expect=7e-08]} {Dmel: FBgn0035272, mRpL46, mitochondrial ribosomal protein L46, [RH, Score=69.7, Expect=6e-14]} {RNA1509_42218, RNA1509_54626} {RNA1310_8085.1, RNA1509_42218, RNA1509_54626} {RNA1509_42218, RNA1509_54626, RNA815_16774}

Mlig455_066129 {REF} {Length: 866} {TRANSSPLICED} {Pfam: 39S mitochondrial ribosomal protein L46 [PF11788.10, score=24.5]} {Human: ENSG00000259494, MRPL46, mitochondrial ribosomal protein L46, [RH, Score=56.2, Expect=7e-09]} {Mouse: ENSMUSG00000030612, Mrpl46, mitochondrial ribosomal protein L46, [RH, Score=52.8, Expect=7e-08]} {Dmel: FBgn0035272, mRpL46, mitochondrial ribosomal protein L46, [RH, Score=69.7, Expect=6e-14]} {RNA1509_59055} {RNA1310_8085.1, RNA1509_59055} {RNA1509_59055, RNA815_16774}
6. MligTC455_51081 100 2.09 Mlig455_029025

Neo: -

Age: -

 THAP2 0.967 - - - 0.967 - - Mlig455_029025 {REF} {Length: 3115} {Pfam: THAP domain [PF05485.14, score=58.0]} {Human: ENSG00000173451, THAP2, THAP domain containing 2, [Score=64.3, Expect=1e-11]} {Mouse: ENSMUSG00000020137, Thap2, THAP domain containing, apoptosis associated protein 2, [Score=65.1, Expect=3e-12]} {RNA1509_46373, RNA1509_47157} {RNA1310_33057, RNA1509_46373, RNA1509_47157} {RNA1509_46373, RNA1509_47157, RNA815_6917.1}
7. MligTC455_22020 269 5.6 Mlig455_031510

Neo: -

Age: logFC(26M/2M)=-0.289

 MAP3K7 0.957 - - - - 0.957 - Mlig455_031510 {REF} {Length: 3506} {TRANSSPLICED} {Pfam: Protein tyrosine and serine/threonine kinase [PF07714.19, score=169.0]; Protein kinase domain [PF00069.27, score=168.0]} {Human: ENSG00000135341, MAP3K7, mitogen-activated protein kinase kinase kinase 7, [RH, Score=229, Expect=1e-67]} {Mouse: ENSMUSG00000028284, Map3k7, mitogen-activated protein kinase kinase kinase 7, [RH, Score=229, Expect=1e-67]} {Dmel: FBgn0026323, Tak1, TGF-beta activated kinase 1, [RH, Score=231, Expect=1e-67]} {Celegans: WBGene00003396, mom-4, Mitogen-activated protein kinase kinase kinase mom-4, [RH, Score=159, Expect=3e-42]} {Smed: dd_Smed_v6_2589_0_2, dd_Smed_v6_2589_0_2, [RH, Score=195, Expect=8e-57]} {RNA1509_28110} {RNA1310_9032, RNA1509_28110} {RNA1509_28110, RNA815_3215}
8. MligTC455_36332 4005 83.44 Mlig455_035242, Mlig455_035287

Neo: -

Age: Up-Down-Down, logFC(26M/2M)=-0.355

 PIM1 0.957 - - - - 0.957 -

Mlig455_035242 {REF} {Length: 2797} {Pfam: Protein kinase domain [PF00069.27, score=193.7]; Protein tyrosine and serine/threonine kinase [PF07714.19, score=74.5]; Kinase-like [PF14531.8, score=19.8]; Lipopolysaccharide kinase (Kdo/WaaP) family [PF06293.16, score=18.7]} {Human: ENSG00000137193, PIM1, Pim-1 proto-oncogene, serine/threonine kinase, [RH, Score=296, Expect=6e-98]} {Mouse: ENSMUSG00000024014, Pim1, proviral integration site 1, [RH, Score=296, Expect=4e-98]} {Dmel: FBgn0034950, Pask, PAS kinase, [Score=136, Expect=2e-34]} {Celegans: WBGene00004183, prk-2, Serine/threonine-protein kinase prk-2, [RH, Score=228, Expect=2e-70]} {Smed: dd_Smed_v6_4012_0_1, dd_Smed_v6_4012_0_1, [RH, Score=283, Expect=3e-92]} {RNA1509_4124} {RNA1310_8145, RNA1509_4124} {RNA1509_4124, RNA815_2413}

Mlig455_035287 {REF} {Length: 2796} {Pfam: Protein kinase domain [PF00069.27, score=193.7]; Protein tyrosine and serine/threonine kinase [PF07714.19, score=74.5]; Kinase-like [PF14531.8, score=19.8]; Lipopolysaccharide kinase (Kdo/WaaP) family [PF06293.16, score=18.7]} {Human: ENSG00000137193, PIM1, Pim-1 proto-oncogene, serine/threonine kinase, [RH, Score=296, Expect=7e-98]} {Mouse: ENSMUSG00000024014, Pim1, proviral integration site 1, [RH, Score=296, Expect=5e-98]} {Dmel: FBgn0034950, Pask, PAS kinase, [Score=136, Expect=2e-34]} {Celegans: WBGene00004183, prk-2, Serine/threonine-protein kinase prk-2, [RH, Score=226, Expect=1e-69]} {Smed: dd_Smed_v6_4012_0_1, dd_Smed_v6_4012_0_1, [RH, Score=283, Expect=3e-92]} {RNA1509_4124, RNA1509_53578} {RNA1310_8145, RNA1509_53578} {RNA1509_53578, RNA815_2413}
9. MligTC455_03323 3504 73.01 Mlig455_019870

Neo: -

Age: -

Region-enriched R6: 2.716/0.00002

 XPNPEP2 0.955 - - - - 0.955 - Mlig455_019870 {REF} {Length: 2912} {Pfam: Metallopeptidase family M24 [PF00557.26, score=120.7]; Creatinase/Prolidase N-terminal domain [PF16189.7, score=108.0]; C-terminal region of peptidase_M24 [PF16188.7, score=74.7]} {Human: ENSG00000122121, XPNPEP2, X-prolyl aminopeptidase 2, [Score=328, Expect=2e-102]; ENSG00000108039, XPNPEP1, X-prolyl aminopeptidase 1, [Score=322, Expect=4e-100]} {Mouse: ENSMUSG00000037005, Xpnpep2, X-prolyl aminopeptidase (aminopeptidase P) 2, membrane-bound, [Score=324, Expect=6e-101]; ENSMUSG00000025027, Xpnpep1, X-prolyl aminopeptidase (aminopeptidase P) 1, soluble, [Score=322, Expect=5e-100]} {Dmel: FBgn0026150, ApepP, Aminopeptidase P, [Score=301, Expect=4e-93]} {Celegans: WBGene00000155, app-1, Xaa-Pro aminopeptidase app-1, [Score=251, Expect=2e-74]} {Smed: dd_Smed_v6_4029_0_1, dd_Smed_v6_4029_0_1, [Score=295, Expect=6e-91]} {RNA1509_3646, RNA1509_9018, RNA1509_968} {RNA1310_7569, RNA1509_3646, RNA1509_9018, RNA1509_968} {RNA1509_3646, RNA1509_9018, RNA1509_968, RNA815_2489}
10. MligTC455_07657 292 6.07 Mlig455_037739

Neo: -

Age: -

 0.955 - - - - 0.955 - Mlig455_037739 {REF} {Length: 492} {RNA1509_47491} {RNA1310_617} {RNA815_1602}
11. MligTC455_49662 317 6.6 Mlig455_055682

Neo: -

Age: -

 DUSP6 0.953 - - 0.953 - - - Mlig455_055682 {REF} {Length: 1287} {TRANSSPLICED} {Pfam: Dual specificity phosphatase, catalytic domain [PF00782.22, score=82.7]; Rit1 DUSP-like domain [PF04179.14, score=19.1]} {Human: ENSG00000139318, DUSP6, dual specificity phosphatase 6, [Score=82.4, Expect=1e-18]; ENSG00000164086, DUSP7, dual specificity phosphatase 7, [Score=80.9, Expect=2e-17]} {Mouse: ENSMUSG00000019960, Dusp6, dual specificity phosphatase 6, [Score=82.4, Expect=3e-18]; ENSMUSG00000053716, Dusp7, dual specificity phosphatase 7, [Score=80.9, Expect=1e-17]} {Dmel: FBgn0243512, puc, puckered, [Score=66.2, Expect=9e-13]} {Celegans: WBGene00021867, Y54F10BM.13, [Score=89.7, Expect=4e-22]} {Smed: dd_Smed_v6_3587_1_1, dd_Smed_v6_3587_1_1, [Score=65.9, Expect=8e-13]} {RNA1509_11978, RNA1509_46824, RNA1509_48442} {RNA1310_30749, RNA1509_46824, RNA1509_48442} {RNA1509_46824, RNA1509_48442, RNA815_30756}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA