TomoSeq data search

Data search

Results for MligTC455_51889

Cluster

Total UMI counts

Global CPM

Transcripts

Categories

Human homolog

Annotation

MligTC455_51889

486

10.12

Mlig455_016609

Neo: -

Age: Up-Down-Down

Mlig455_016609 {REF} {Length: 2660} {Pfam: Nucleoside 2-deoxyribosyltransferase [PF05014.17, score=26.4]} {Mouse: ENSMUSG00000040658, Dnph1, 2'-deoxynucleoside 5'-phosphate N-hydrolase 1, [Score=46.6, Expect=2e-06]} {RNA1509_18997, RNA1509_34641} {RNA1310_27621, RNA1509_18997} {RNA1509_18997, RNA815_14966}

Cumulative graph for MligTC455_51889

Region-enriched expression

Region	logFC	logCPM	Pvalue	FDR	Specificity
RegionR1	0.481	3.624	0.65837	1.00000
RegionR2	-0.423	3.624	0.51522	0.89152
RegionR3	0.742	3.624	0.14516	0.64869
RegionR4	1.544	3.624	0.00873	0.05510
RegionR5	-1.329	3.624	0.02111	0.10088
RegionR6	-0.418	3.624	0.45748	1.00000
RegionR7	-0.706	3.624	0.29237	0.92685
RegionR8	0.109	3.624	0.87744	1.00000

Regeneration-enriched expression

Region	logFC	logCPM	PValue	FDR	Specificity
RegenerationR1	-7.409	3.624	0.05343	0.70566
RegenerationR2	-0.928	3.624	0.16579	0.60343
RegenerationR3	-0.279	3.624	0.65978	0.93316
RegenerationR4	-1.367	3.624	0.03600	0.30684
RegenerationR5	0.333	3.624	0.62333	0.91988
RegenerationR6	-1.055	3.624	0.15614	0.48329
RegenerationBL	-6.495	3.624	0.00057	0.01530
RegenerationTP	0.434	3.624	0.54715	0.93131

Genes with expression patterns similar to MligTC455_51889

Nr.	Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Σ Spearman correlations	Int1	Int2	Int3	Reg1	Reg2	Reg3	Annotation
1.	MligTC455_51889	486	10.12	Mlig455_016609	Neo: - Age: Up-Down-Down		6	1.000	1.000	1.000	1.000	1.000	1.000	Mlig455_016609 {REF} {Length: 2660} {Pfam: Nucleoside 2-deoxyribosyltransferase [PF05014.17, score=26.4]} {Mouse: ENSMUSG00000040658, Dnph1, 2'-deoxynucleoside 5'-phosphate N-hydrolase 1, [Score=46.6, Expect=2e-06]} {RNA1509_18997, RNA1509_34641} {RNA1310_27621, RNA1509_18997} {RNA1509_18997, RNA815_14966}
2.	MligTC455_11013	203	4.22	Mlig455_010455	Neo: - Age: - Region-enriched R2: 3.244/0.03731		0.977	-	-	-	0.977	-	-	Mlig455_010455 {REF} {Length: 1483} {RNA1310_22199.1} {RNA815_10412}
3.	MligTC455_38339	196	4.08	Mlig455_036702	Neo: Irradiation Age: Up-Down-Up, logFC(26M/2M)=0.405 Region-specific R4: 4.207 Region-enriched R4: 2.871/0.00033		0.952	-	0.952	-	-	-	-	Mlig455_036702 {REF} {Length: 1206} {NoTransDecoderORF} {RNA1509_26375} {RNA1310_32197, RNA1509_26375} {RNA1509_26375, RNA815_16782.1}
4.	MligTC455_47093	2322	48.38	Mlig455_024237	Neo: Irradiation Age: - Region-specific R4: 4.410 Region-enriched R4: 3.183/0.00000		0.952	-	0.952	-	-	-	-	Mlig455_024237 {REF} {Length: 1545} {RNA1509_21108, RNA1509_26626, RNA1509_44910, RNA1509_5670, RNA1509_6954} {RNA1310_22180.1, RNA1509_21108, RNA1509_26626, RNA1509_44910, RNA1509_5670, RNA1509_6954} {RNA1509_21108, RNA1509_26626, RNA1509_44910, RNA1509_5670, RNA1509_6954, RNA815_9214}
5.	MligTC455_13427	631	13.14	Mlig455_065910	Neo: Irradiation Age: Up-Down-Down Region-specific R4: 5.625 Region-specific R1: 5.281 Region-enriched R4: 3.907/0.00000 Region-enriched R1: 3.667/0.00761 Regeneration-downregulated R4: -2.420 Regeneration-depleted R4: -2.420	TXN	0.95	-	0.950	-	-	-	-	Mlig455_065910 {REF} {Length: 1020} {Pfam: Thioredoxin [PF00085.22, score=65.5]; Thioredoxin [PF14595.8, score=23.2]; Thioredoxin-like [PF13905.8, score=22.2]; Thioredoxin-like domain [PF13098.8, score=20.0]} {Human: ENSG00000136810, TXN, thioredoxin, [Score=67.4, Expect=5e-14]} {Mouse: ENSMUSG00000028367, Txn1, thioredoxin 1, [Score=63.5, Expect=9e-13]} {Dmel: FBgn0029752, TrxT, Thioredoxin T, [Score=69.7, Expect=9e-15]} {Celegans: WBGene00010160, png-1, Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase, [Score=60.5, Expect=2e-10]} {RNA1509_10655, RNA1509_27175, RNA1509_33002} {RNA1310_32921, RNA1509_10655, RNA1509_33002} {RNA1509_10655, RNA1509_33002, RNA815_20357}

Berezikov Lab - 2020-2021 © ERIBA