M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_51911

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_51911 501 10.44 Mlig455_016369

Neo: -

Age: Down-Up-Down

 EHBP1L1 Mlig455_016369 {REF} {Length: 1447} {TRANSSPLICED} {Pfam: Calponin homology (CH) domain [PF00307.33, score=54.6]; CAMSAP CH domain [PF11971.10, score=18.7]} {Human: ENSG00000173442, EHBP1L1, EH domain binding protein 1 like 1, [Score=93.2, Expect=1e-19]; ENSG00000115504, EHBP1, EH domain binding protein 1, [Score=91.7, Expect=3e-19]} {Mouse: ENSMUSG00000042302, Ehbp1, EH domain binding protein 1, [Score=92.8, Expect=9e-20]; ENSMUSG00000024937, Ehbp1l1, EH domain binding protein 1-like 1, [Score=92.4, Expect=1e-19]} {Dmel: FBgn0034180, Ehbp1, Eps15 homology domain containing protein-binding protein 1, [Score=86.7, Expect=6e-18]} {Celegans: WBGene00020530, T15B12.1, [Score=57.8, Expect=2e-09]} {Smed: dd_Smed_v6_5788_0_1, dd_Smed_v6_5788_0_1, [Score=98.2, Expect=4e-22]} {RNA1509_56638} {RNA1310_4701.1, RNA1509_56638} {RNA1509_56638, RNA815_10493}

Cumulative graph for MligTC455_51911

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -0.045 3.69 0.96969 1.00000
RegionR2 0.138 3.69 0.79008 1.00000
RegionR3 -0.274 3.69 0.54692 1.00000
RegionR4 0.347 3.69 0.43412 0.76300
RegionR5 0.404 3.69 0.28316 0.61241
RegionR6 0.391 3.69 0.35828 0.94243
RegionR7 0.081 3.69 0.89236 1.00000
RegionR8 -1.041 3.69 0.27241 0.89549

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -0.217 3.69 0.88729 1.00000
RegenerationR2 -0.23 3.69 0.57940 0.90677
RegenerationR3 0.164 3.69 0.72503 0.95636
RegenerationR4 -0.443 3.69 0.29738 0.73964
RegenerationR5 0.411 3.69 0.27981 0.70910
RegenerationR6 -0.518 3.69 0.25583 0.60615
RegenerationBL 0.089 3.69 0.88301 1.00000
RegenerationTP 0.663 3.69 0.34459 0.78718


Genes with expression patterns similar to MligTC455_51911

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_51911 501 10.44 Mlig455_016369

Neo: -

Age: Down-Up-Down

 EHBP1L1 6 1.000 1.000 1.000 1.000 1.000 1.000 Mlig455_016369 {REF} {Length: 1447} {TRANSSPLICED} {Pfam: Calponin homology (CH) domain [PF00307.33, score=54.6]; CAMSAP CH domain [PF11971.10, score=18.7]} {Human: ENSG00000173442, EHBP1L1, EH domain binding protein 1 like 1, [Score=93.2, Expect=1e-19]; ENSG00000115504, EHBP1, EH domain binding protein 1, [Score=91.7, Expect=3e-19]} {Mouse: ENSMUSG00000042302, Ehbp1, EH domain binding protein 1, [Score=92.8, Expect=9e-20]; ENSMUSG00000024937, Ehbp1l1, EH domain binding protein 1-like 1, [Score=92.4, Expect=1e-19]} {Dmel: FBgn0034180, Ehbp1, Eps15 homology domain containing protein-binding protein 1, [Score=86.7, Expect=6e-18]} {Celegans: WBGene00020530, T15B12.1, [Score=57.8, Expect=2e-09]} {Smed: dd_Smed_v6_5788_0_1, dd_Smed_v6_5788_0_1, [Score=98.2, Expect=4e-22]} {RNA1509_56638} {RNA1310_4701.1, RNA1509_56638} {RNA1509_56638, RNA815_10493}
2. MligTC455_26328 469 9.77 Mlig455_008524, Mlig455_008552

Neo: -

Age: -

 KAT5 1.727 - 0.955 - - - 0.772

Mlig455_008524 {REF} {Length: 3191} {TRANSSPLICED} {Pfam: MOZ/SAS family [PF01853.20, score=278.0]; MYST family zinc finger domain [PF17772.3, score=80.7]; RNA binding activity-knot of a chromodomain [PF11717.10, score=61.9]; Acetyltransferase (GNAT) domain [PF13508.9, score=21.7]} {Human: ENSG00000172977, KAT5, lysine acetyltransferase 5, [RH, Score=484, Expect=4e-167]} {Mouse: ENSMUSG00000024926, Kat5, K(lysine) acetyltransferase 5, [Score=486, Expect=1e-167]} {Dmel: FBgn0026080, Tip60, Tat interactive protein 60kDa, [RH, Score=501, Expect=2e-173]} {Celegans: WBGene00007029, mys-1, Histone acetyltransferase Tip60 homolog, [RH, Score=416, Expect=2e-141]} {Smed: dd_Smed_v6_4706_1_4, dd_Smed_v6_4706_1_4, [RH, Score=467, Expect=2e-161]} {RNA1509_11464} {RNA1310_14931} {RNA815_5906}

Mlig455_008552 {REF} {Length: 3155} {TRANSSPLICED} {Pfam: MOZ/SAS family [PF01853.20, score=278.0]; MYST family zinc finger domain [PF17772.3, score=80.7]; RNA binding activity-knot of a chromodomain [PF11717.10, score=61.9]; Acetyltransferase (GNAT) domain [PF13508.9, score=21.7]} {Human: ENSG00000172977, KAT5, lysine acetyltransferase 5, [RH, Score=484, Expect=4e-167]} {Mouse: ENSMUSG00000024926, Kat5, K(lysine) acetyltransferase 5, [Score=486, Expect=1e-167]} {Dmel: FBgn0026080, Tip60, Tat interactive protein 60kDa, [RH, Score=501, Expect=2e-173]} {Celegans: WBGene00007029, mys-1, Histone acetyltransferase Tip60 homolog, [RH, Score=416, Expect=2e-141]} {Smed: dd_Smed_v6_4706_1_4, dd_Smed_v6_4706_1_4, [RH, Score=467, Expect=2e-161]} {RNA1509_11464} {RNA1310_14931} {RNA815_5906}
3. MligTC455_20047 1050 21.87 Mlig455_006587, Mlig455_006748

Neo: -

Age: -

Region-enriched R4: 2.085/0.00201
Region-enriched R5: 1.753/0.00225

 CASP3 1.694 0.735 - 0.959 - - -

Mlig455_006587 {REF} {Length: 2381} {TRANSSPLICED} {Pfam: Caspase domain [PF00656.24, score=117.2]} {Human: ENSG00000164305, CASP3, caspase 3, [Score=210, Expect=1e-65]; ENSG00000165806, CASP7, caspase 7, [Score=204, Expect=6e-63]} {Mouse: ENSMUSG00000031628, Casp3, caspase 3, [Score=205, Expect=8e-64]; ENSMUSG00000025076, Casp7, caspase 7, [Score=201, Expect=7e-62]} {Dmel: FBgn0010501, Dcp-1, Death caspase-1, [RH, Score=189, Expect=2e-57]} {Celegans: WBGene00000417, ced-3, Cell death protein 3 Cell death protein 3 subunit 1 Cell death protein 3 subunit 2, [Score=132, Expect=5e-36]} {Smed: dd_Smed_v6_4986_0_1, dd_Smed_v6_4986_0_1, [RH, Score=174, Expect=3e-52]} {RNA1509_21320, RNA1509_30446, RNA1509_55118} {RNA1310_15341.2, RNA1509_21320, RNA1509_30446, RNA1509_55118} {RNA1509_21320, RNA1509_30446, RNA1509_55118, RNA815_6492}

Mlig455_006748 {REF} {Length: 1773} {TRANSSPLICED} {Pfam: Caspase domain [PF00656.24, score=117.2]} {Human: ENSG00000164305, CASP3, caspase 3, [Score=210, Expect=1e-65]; ENSG00000165806, CASP7, caspase 7, [Score=204, Expect=5e-63]} {Mouse: ENSMUSG00000031628, Casp3, caspase 3, [Score=205, Expect=8e-64]; ENSMUSG00000025076, Casp7, caspase 7, [Score=201, Expect=8e-62]} {Dmel: FBgn0010501, Dcp-1, Death caspase-1, [RH, Score=189, Expect=2e-57]} {Celegans: WBGene00000417, ced-3, Cell death protein 3 Cell death protein 3 subunit 1 Cell death protein 3 subunit 2, [Score=132, Expect=4e-36]} {Smed: dd_Smed_v6_4986_0_1, dd_Smed_v6_4986_0_1, [RH, Score=174, Expect=3e-52]} {RNA1509_39221, RNA1509_55118} {RNA1310_15341.2, RNA1509_39221} {RNA1509_39221, RNA815_6492}
4. MligTC455_38292 148 3.09 Mlig455_057300

Neo: -

Age: -

 TUBD1 1.666 - 0.950 - 0.716 - - Mlig455_057300 {REF} {Length: 3000} {TRANSSPLICED} {Pfam: Tubulin/FtsZ family, GTPase domain [PF00091.27, score=149.3]; Tubulin like [PF13809.8, score=18.2]} {Human: ENSG00000108423, TUBD1, tubulin delta 1, [RH, Score=354, Expect=6e-118]} {Mouse: ENSMUSG00000020513, Tubd1, tubulin, delta 1, [RH, Score=354, Expect=5e-118]} {Dmel: FBgn0010097, gammaTub37C, gamma-Tubulin at 37C, [Score=134, Expect=3e-34]} {Celegans: WBGene00003171, mec-7, Tubulin beta-1 chain, [Score=134, Expect=2e-34]} {Smed: dd_Smed_v6_15819_0_4, dd_Smed_v6_15819_0_4, [RH, Score=321, Expect=1e-105]} {RNA1509_37116} {RNA1310_16834.1, RNA1509_37116} {RNA1509_37116, RNA815_17890}
5. MligTC455_33625 167 3.47 Mlig455_009980

Neo: -

Age: -

Region-enriched R5: 1.432/0.04719

 0.958 - 0.958 - - - - Mlig455_009980 {REF} {Length: 3033} {Pfam: Transducer of regulated CREB activity, N terminus [PF12884.9, score=29.5]} {RNA1509_26956} {RNA1310_8476} {RNA815_20817}
6. MligTC455_35820 87 1.81 Mlig455_017434

Neo: -

Age: -

 0.958 - 0.958 - - - - Mlig455_017434 {REF} {Length: 1476} {TRANSSPLICED} {RNA1310_42117} {RNA815_18951.1}
7. MligTC455_18849 285 5.93 Mlig455_019510

Neo: -

Age: -

 0.957 - 0.957 - - - - Mlig455_019510 {REF} {Length: 1502} {TRANSSPLICED} {Pfam: SUZ domain [PF12752.9, score=43.3]} {RNA1509_41034} {RNA1310_40561} {RNA815_9711.1}
8. MligTC455_13455 107 2.24 Mlig455_048184

Neo: -

Age: -

Region-enriched R2: 5.623/0.00020

 ACSS2 0.956 - 0.956 - - - - Mlig455_048184 {REF} {Length: 3531} {Pfam: AMP-binding enzyme [PF00501.30, score=292.3]; AMP-binding enzyme C-terminal domain [PF13193.8, score=82.0]; Acetyl-coenzyme A synthetase N-terminus [PF16177.7, score=49.1]} {Human: ENSG00000131069, ACSS2, acyl-CoA synthetase short chain family member 2, [Score=632, Expect=0.0]} {Mouse: ENSMUSG00000027605, Acss2, acyl-CoA synthetase short-chain family member 2, [Score=627, Expect=0.0]} {Dmel: FBgn0012034, AcCoAS, Acetyl Coenzyme A synthase, [Score=668, Expect=0.0]} {Celegans: WBGene00007969, acs-19, Acetyl-coenzyme A synthetase, [Score=585, Expect=0.0]} {Smed: dd_Smed_v6_1817_0_1, dd_Smed_v6_1817_0_1, [Score=642, Expect=0.0]} {RNA1310_58555} {RNA815_29982}
9. MligTC455_32517 153 3.19 Mlig455_064987

Neo: -

Age: Up-Down-Up

 OTUD7B 0.956 - 0.956 - - - - Mlig455_064987 {REF} {Length: 3738} {TRANSSPLICED} {Pfam: OTU-like cysteine protease [PF02338.21, score=67.6]; A20-like zinc finger [PF01754.18, score=22.3]} {Human: ENSG00000264522, OTUD7B, OTU deubiquitinase 7B, [RH, Score=251, Expect=6e-72]} {Mouse: ENSMUSG00000038495, Otud7b, OTU domain containing 7B, [RH, Score=251, Expect=5e-72]; ENSMUSG00000033510, Otud7a, OTU domain containing 7A, [RH, Score=247, Expect=1e-71]} {Dmel: FBgn0037734, trbd, trabid, [Score=125, Expect=3e-29]} {Celegans: WBGene00021733, otub-2, OTUBain deubiquitylating protease homolog, [RH, Score=238, Expect=4e-69]} {Smed: dd_Smed_v6_10637_0_1, dd_Smed_v6_10637_0_1, [Score=246, Expect=3e-73]} {RNA1509_13944} {RNA1310_14040.1} {RNA815_8064}
10. MligTC455_51040 147 3.06 Mlig455_008235

Neo: -

Age: -

 POLN 0.956 - 0.956 - - - - Mlig455_008235 {REF} {Length: 3176} {TRANSSPLICED} {Pfam: DNA polymerase family A [PF00476.22, score=284.2]} {Human: ENSG00000130997, POLN, DNA polymerase nu, [RH, Score=233, Expect=6e-64]} {Mouse: ENSMUSG00000045102, Poln, DNA polymerase N, [RH, Score=226, Expect=5e-62]} {Dmel: FBgn0002905, mus308, mutagen-sensitive 308, [Score=139, Expect=3e-33]} {Celegans: WBGene00020964, polq-1, DNA polymerase theta, [Score=159, Expect=1e-39]} {Smed: dd_Smed_v6_20320_0_1, dd_Smed_v6_20320_0_1, [Score=155, Expect=2e-39]} {RNA1509_41749} {RNA1310_31032} {RNA815_48580}
11. MligTC455_51737 49 1.01 Mlig455_060275

Neo: Germline

Age: logFC(26M/2M)=-0.968

Region-enriched R4: 3.321/0.01433

 HFM1 0.955 - 0.955 - - - - Mlig455_060275 {REF} {Length: 5261} {TRANSSPLICED} {Pfam: DEAD/DEAH box helicase [PF00270.31, score=79.5]; Sec63 Brl domain [PF02889.18, score=67.8]; Helicase conserved C-terminal domain [PF00271.33, score=34.2]; Type III restriction enzyme, res subunit [PF04851.17, score=33.2]; Helix-hairpin-helix domain [PF14520.8, score=22.6]} {Human: ENSG00000162669, HFM1, HFM1, ATP dependent DNA helicase homolog, [RH, Score=571, Expect=3e-177]} {Mouse: ENSMUSG00000043410, Hfm1, HFM1, ATP-dependent DNA helicase homolog, [RH, Score=568, Expect=1e-176]} {Dmel: FBgn0263599, l(3)72Ab, lethal (3) 72Ab, [Score=280, Expect=5e-76]} {Celegans: WBGene00012896, snrp-200, Putative U5 small nuclear ribonucleoprotein 200 kDa helicase, [Score=265, Expect=2e-71]} {Smed: dd_Smed_v6_24408_0_1, dd_Smed_v6_24408_0_1, [RH, Score=448, Expect=5e-135]} {RNA1509_54934} {RNA1310_43917, RNA1509_54934} {RNA1509_54934, RNA815_48120}
12. MligTC455_23900 790 16.46 Mlig455_046112

Neo: Int S/G2/M

Age: Down-Up-Down, logFC(26M/2M)=-0.380

Region-enriched R5: 1.370/0.00184

Regeneration-upregulated R6: 2.045

Regeneration-enriched R6: 2.045

 0.954 - 0.954 - - - - Mlig455_046112 {REF} {Length: 1282} {TRANSSPLICED} {RNA1509_15796, RNA1509_44444, RNA1509_53057} {RNA1310_22553.1, RNA1509_44444, RNA1509_53057} {RNA1509_44444, RNA1509_53057, RNA815_21620}
13. MligTC455_48165 143 2.98 Mlig455_049623

Neo: Int S/G2/M

Age: -

 0.954 - 0.954 - - - - Mlig455_049623 {REF} {Length: 1140} {RNA1310_33566.1} {RNA815_30162}
14. MligTC455_05745 42 0.88 Mlig455_020798

Neo: -

Age: -

 0.953 - 0.953 - - - - Mlig455_020798 {REF} {Length: 425} {NoTransDecoderORF}
15. MligTC455_07920 131 2.73 Mlig455_029217

Neo: -

Age: -

Region-enriched R6: 5.473/0.00039

 OSR1 0.953 - 0.953 - - - - Mlig455_029217 {REF} {Length: 1175} {Pfam: Zinc finger, C2H2 type [PF00096.28, score=54.3]; Zinc-finger double domain [PF13465.8, score=46.0]; C2H2-type zinc finger [PF13894.8, score=40.7]; C2H2-type zinc finger [PF13912.8, score=28.1]; Zinc-finger double-stranded RNA-binding [PF12171.10, score=24.7]} {Human: ENSG00000143867, OSR1, odd-skipped related transciption factor 1, [RH, Score=178, Expect=8e-55]; ENSG00000164920, OSR2, odd-skipped related transciption factor 2, [RH, Score=171, Expect=1e-51]} {Mouse: ENSMUSG00000048387, Osr1, odd-skipped related transcription factor 1, [RH, Score=176, Expect=3e-54]; ENSMUSG00000022330, Osr2, odd-skipped related 2, [RH, Score=171, Expect=5e-52]} {Dmel: FBgn0002985, odd, odd skipped, [RH, Score=159, Expect=2e-46]} {Celegans: WBGene00003846, odd-2, Protein odd-skipped-related 2, [RH, Score=170, Expect=4e-52]} {Smed: dd_Smed_v6_10039_0_1, dd_Smed_v6_10039_0_1, [RH, Score=189, Expect=3e-59]} {RNA1509_57522} {RNA1310_38770} {RNA815_13682.1}
16. MligTC455_20228 160 3.33 Mlig455_025853, Mlig455_025915

Neo: Irradiation

Age: -

Region-enriched R5: 2.361/0.00341

 BLM 0.952 - 0.952 - - - -

Mlig455_025853 {REF} {Length: 4872} {TRANSSPLICED} {Pfam: DEAD/DEAH box helicase [PF00270.31, score=68.7]; Helicase conserved C-terminal domain [PF00271.33, score=64.4]; RecQ zinc-binding [PF16124.7, score=57.3]; HRDC domain [PF00570.25, score=42.5]; RQC domain [PF09382.12, score=39.4]; Type III restriction enzyme, res subunit [PF04851.17, score=26.0]} {Human: ENSG00000197299, BLM, Bloom syndrome RecQ like helicase, [RH, Score=560, Expect=6e-176]} {Mouse: ENSMUSG00000030528, Blm, Bloom syndrome, RecQ like helicase, [RH, Score=555, Expect=5e-174]} {Dmel: FBgn0002906, Blm, Bloom syndrome helicase, [RH, Score=568, Expect=1e-178]} {Celegans: WBGene00001865, him-6, Bloom syndrome protein homolog, [RH, Score=484, Expect=5e-152]} {Smed: dd_Smed_v6_10119_0_1, dd_Smed_v6_10119_0_1, [RH, Score=662, Expect=0.0]} {RNA1509_10459} {RNA1310_1433} {RNA815_5612}

Mlig455_025915 {REF} {Length: 4878} {TRANSSPLICED} {Pfam: DEAD/DEAH box helicase [PF00270.31, score=68.6]; Helicase conserved C-terminal domain [PF00271.33, score=64.2]; RecQ zinc-binding [PF16124.7, score=57.2]; HRDC domain [PF00570.25, score=42.4]; RQC domain [PF09382.12, score=39.3]; Type III restriction enzyme, res subunit [PF04851.17, score=25.9]} {Human: ENSG00000197299, BLM, Bloom syndrome RecQ like helicase, [RH, Score=558, Expect=1e-174]} {Mouse: ENSMUSG00000030528, Blm, Bloom syndrome, RecQ like helicase, [RH, Score=553, Expect=2e-172]} {Dmel: FBgn0002906, Blm, Bloom syndrome helicase, [RH, Score=567, Expect=2e-177]} {Celegans: WBGene00001865, him-6, Bloom syndrome protein homolog, [RH, Score=483, Expect=3e-151]} {Smed: dd_Smed_v6_10119_0_1, dd_Smed_v6_10119_0_1, [RH, Score=661, Expect=0.0]} {RNA1509_10459} {RNA1310_1433} {RNA815_5612}
17. MligTC455_06211 52 1.09 Mlig455_053942

Neo: Int S/G2/M

Age: -

 0.951 - 0.951 - - - - Mlig455_053942 {REF} {Length: 1329} {NoTransDecoderORF} {RNA1509_48102} {RNA1310_24234.1} {RNA815_9984}
18. MligTC455_19900 200 4.17 Mlig455_039883

Neo: Int S/G2/M

Age: -

 0.951 - 0.951 - - - - Mlig455_039883 {REF} {Length: 2171} {TRANSSPLICED} {RNA1509_29364} {RNA1310_20695.1, RNA1509_29364} {RNA1509_29364, RNA815_19668}
19. MligTC455_00577 32 0.67 Mlig455_062162, Mlig455_062195

Neo: -

Age: -

 0.95 - 0.950 - - - -

Mlig455_062162 {REF} {Length: 912} {NoTransDecoderORF}

Mlig455_062195 {REF} {Length: 427} {NoTransDecoderORF}
20. MligTC455_11156 36 0.74 Mlig455_051097

Neo: -

Age: -

 0.95 - 0.950 - - - - Mlig455_051097 {REF} {Length: 514} {RNA1509_23957} {RNA1310_8646.4} {RNA815_16554.2}
21. MligTC455_28726 293 6.1 Mlig455_039705

Neo: Int S/G2/M

Age: -

 ACTR6 0.95 - 0.950 - - - - Mlig455_039705 {REF} {Length: 1918} {TRANSSPLICED} {Pfam: Actin [PF00022.21, score=207.8]} {Human: ENSG00000075089, ACTR6, ARP6 actin related protein 6 homolog, [RH, Score=323, Expect=3e-107]} {Mouse: ENSMUSG00000019948, Actr6, ARP6 actin-related protein 6, [RH, Score=320, Expect=4e-106]} {Dmel: FBgn0011741, Arp6, Actin-related protein 6, [RH, Score=308, Expect=8e-102]} {Celegans: WBGene00007434, arp-6, Actin-like protein C08B11.6, [RH, Score=253, Expect=3e-80]} {Smed: dd_Smed_v6_7773_0_1, dd_Smed_v6_7773_0_1, [RH, Score=314, Expect=3e-104]} {RNA1509_45984} {RNA1310_24287} {RNA815_8792}
22. MligTC455_43954 180 3.75 Mlig455_052583, Mlig455_052596

Neo: Irradiation

Age: -

 0.95 - 0.950 - - - -

Mlig455_052583 {REF} {Length: 2001} {TRANSSPLICED} {RNA1509_34415} {RNA1310_26609.1, RNA1509_34415} {RNA1509_34415, RNA815_19301}

Mlig455_052596 {REF} {Length: 2140} {TRANSSPLICED} {RNA1509_34415, RNA1509_57175} {RNA1310_25763, RNA1509_57175} {RNA1509_57175, RNA815_19301}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA