Data search
Results for MligTC455_52236
| Cluster | Total UMI counts | Global CPM | Transcripts | Categories | Human homolog | Annotation |
|---|---|---|---|---|---|---|
| MligTC455_52236 | 3487 | 72.64 | Mlig455_062004 | Neo: Int S/G2/M Age: Down-Down-Up |
RPL30 | Mlig455_062004 {REF} {Length: 470} {TRANSSPLICED} {Pfam: Ribosomal protein L7Ae/L30e/S12e/Gadd45 family [PF01248.28, score=78.9]} {Human: ENSG00000156482, RPL30, ribosomal protein L30, [RH, Score=166, Expect=2e-54]} {Mouse: ENSMUSG00000058600, Rpl30, ribosomal protein L30, [RH, Score=166, Expect=1e-54]} {Dmel: FBgn0086710, RpL30, Ribosomal protein L30, [RH, Score=157, Expect=5e-51]} {Celegans: WBGene00004444, rpl-30, Ribosomal Protein, Large subunit, [RH, Score=164, Expect=5e-54]} {Smed: dd_Smed_v6_111_0_1, dd_Smed_v6_111_0_1, [RH, Score=125, Expect=9e-39]} {RNA1509_6030} {RNA1310_75658} {RNA815_38924} |
Cumulative graph for MligTC455_52236
Region-enriched expression
| Region | logFC | logCPM | Pvalue | FDR | Specificity |
|---|---|---|---|---|---|
| RegionR1 | -1.52 | 6.28 | 0.01270 | 0.31961 | |
| RegionR2 | -0.264 | 6.28 | 0.51630 | 0.89205 | |
| RegionR3 | 0.386 | 6.28 | 0.24669 | 0.78966 | |
| RegionR4 | 0.287 | 6.28 | 0.44523 | 0.77423 | |
| RegionR5 | 0.63 | 6.28 | 0.04855 | 0.18371 | |
| RegionR6 | 0.057 | 6.28 | 0.86649 | 1.00000 | |
| RegionR7 | 0.373 | 6.28 | 0.27014 | 0.90149 | |
| RegionR8 | 0.05 | 6.28 | 0.89923 | 1.00000 |
Regeneration-enriched expression
| Region | logFC | logCPM | PValue | FDR | Specificity |
|---|---|---|---|---|---|
| RegenerationR1 | -0.769 | 6.28 | 0.39945 | 1.00000 | |
| RegenerationR2 | -0.523 | 6.28 | 0.20683 | 0.65413 | |
| RegenerationR3 | -0.497 | 6.28 | 0.24305 | 0.67762 | |
| RegenerationR4 | -0.215 | 6.28 | 0.61846 | 0.92014 | |
| RegenerationR5 | -0.154 | 6.28 | 0.71426 | 0.95759 | |
| RegenerationR6 | -0.557 | 6.28 | 0.20290 | 0.54457 | |
| RegenerationBL | -1.017 | 6.28 | 0.01441 | 0.12534 | |
| RegenerationTP | -0.463 | 6.28 | 0.27492 | 0.72301 |
Genes with expression patterns similar to MligTC455_52236
| Nr. | Cluster | Total UMI counts | Global CPM | Transcripts | Categories | Human homolog | Σ Spearman correlations | Int1 | Int2 | Int3 | Reg1 | Reg2 | Reg3 | Annotation |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1. | MligTC455_52236 | 3487 | 72.64 | Mlig455_062004 | Neo: Int S/G2/M Age: Down-Down-Up |
RPL30 | 6 | 1.000 | 1.000 | 1.000 | 1.000 | 1.000 | 1.000 | Mlig455_062004 {REF} {Length: 470} {TRANSSPLICED} {Pfam: Ribosomal protein L7Ae/L30e/S12e/Gadd45 family [PF01248.28, score=78.9]} {Human: ENSG00000156482, RPL30, ribosomal protein L30, [RH, Score=166, Expect=2e-54]} {Mouse: ENSMUSG00000058600, Rpl30, ribosomal protein L30, [RH, Score=166, Expect=1e-54]} {Dmel: FBgn0086710, RpL30, Ribosomal protein L30, [RH, Score=157, Expect=5e-51]} {Celegans: WBGene00004444, rpl-30, Ribosomal Protein, Large subunit, [RH, Score=164, Expect=5e-54]} {Smed: dd_Smed_v6_111_0_1, dd_Smed_v6_111_0_1, [RH, Score=125, Expect=9e-39]} {RNA1509_6030} {RNA1310_75658} {RNA815_38924} |
| 2. | MligTC455_38255 | 1836 | 38.24 | Mlig455_022144 | Neo: Int S/G2/M Age: logFC(26M/2M)=0.294 |
RPS27L | 3.296 | 0.798 | 0.785 | - | 0.973 | - | 0.740 | Mlig455_022144 {REF} {Length: 356} {TRANSSPLICED} {Pfam: Ribosomal protein S27 [PF01667.19, score=90.7]} {Human: ENSG00000185088, RPS27L, ribosomal protein S27 like, [RH, Score=131, Expect=2e-41]; ENSG00000177954, RPS27, ribosomal protein S27, [RH, Score=125, Expect=8e-39]} {Mouse: ENSMUSG00000036781, Rps27l, ribosomal protein S27-like, [RH, Score=131, Expect=1e-41]; ENSMUSG00000090733, Rps27, ribosomal protein S27, [RH, Score=125, Expect=5e-39]; ENSMUSG00000050621, Rps27rt, ribosomal protein S27, retrogene, [RH, Score=125, Expect=5e-39]} {Dmel: FBgn0039300, RpS27, Ribosomal protein S27, [RH, Score=137, Expect=5e-44]} {Celegans: WBGene00004496, rps-27, 40S ribosomal protein S27, [RH, Score=125, Expect=2e-39]} {Smed: dd_Smed_v6_106_0_1, dd_Smed_v6_106_0_1, [RH, Score=122, Expect=2e-38]} {RNA1509_6185} {RNA1310_95981, RNA1509_6185} {RNA1509_6185, RNA815_25658.2} |
| 3. | MligTC455_52235 | 5562 | 115.87 | Mlig455_051640 | Neo: Int S/G2/M Age: Down-Up-Up |
RPL30 | 2.528 | - | 0.733 | - | 0.962 | - | 0.833 | Mlig455_051640 {REF} {Length: 475} {TRANSSPLICED} {Pfam: Ribosomal protein L7Ae/L30e/S12e/Gadd45 family [PF01248.28, score=78.9]} {Human: ENSG00000156482, RPL30, ribosomal protein L30, [RH, Score=166, Expect=2e-54]} {Mouse: ENSMUSG00000058600, Rpl30, ribosomal protein L30, [RH, Score=166, Expect=1e-54]} {Dmel: FBgn0086710, RpL30, Ribosomal protein L30, [RH, Score=157, Expect=5e-51]} {Celegans: WBGene00004444, rpl-30, Ribosomal Protein, Large subunit, [RH, Score=164, Expect=5e-54]} {Smed: dd_Smed_v6_111_0_1, dd_Smed_v6_111_0_1, [RH, Score=125, Expect=9e-39]} {RNA1509_3525, RNA1509_5481, RNA1509_6030, RNA1509_9810} {RNA1310_75658, RNA1509_3525, RNA1509_5481, RNA1509_9810} {RNA1509_3525, RNA1509_5481, RNA1509_9810, RNA815_38924} |
| 4. | MligTC455_19142 | 8125 | 169.27 | Mlig455_054416, Mlig455_070500 | Neo: Germline Age: Down-Up-Down Region-enriched R4: 1.358/0.00422 |
0.963 | - | - | - | 0.963 | - | - | Mlig455_054416 {REF} {Length: 943} {NoTransDecoderORF} {RNA1509_2670, RNA1509_4877} {RNA1310_68666, RNA1509_2670, RNA1509_4877} {RNA1509_2670, RNA1509_4877, RNA815_20064} Mlig455_070500 {REF} {Length: 922} {NoTransDecoderORF} {RNA1509_4877} {RNA1310_68666} {RNA815_20064} |
Berezikov Lab - 2020-2021 © ERIBA