M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_52422

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_52422 1020 21.26 Mlig455_009135

Neo: -

Age: -

 PLEKHA5 Mlig455_009135 {REF} {Length: 5145} {TRANSSPLICED} {Pfam: PH domain [PF00169.31, score=47.0]} {Human: ENSG00000052126, PLEKHA5, pleckstrin homology domain containing A5, [RH, Score=59.3, Expect=4e-08]} {Mouse: ENSMUSG00000030231, Plekha5, pleckstrin homology domain containing, family A member 5, [RH, Score=59.3, Expect=1e-08]} {Dmel: FBgn0085412, CG34383, [RH, Score=64.7, Expect=3e-10]} {Smed: dd_Smed_v6_6425_0_1, dd_Smed_v6_6425_0_1, [RH, Score=126, Expect=1e-29]} {RNA1509_4182, RNA1509_55385} {RNA1310_2271, RNA1509_4182, RNA1509_55385} {RNA1509_4182, RNA1509_55385, RNA815_8180.1}

Cumulative graph for MligTC455_52422

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -2.259 4.677 0.16430 0.78812
RegionR2 0.264 4.677 0.62534 0.96781
RegionR3 0.289 4.677 0.51418 1.00000
RegionR4 0.86 4.677 0.11937 0.34591
RegionR5 -0.46 4.677 0.37062 0.72363
RegionR6 -0.011 4.677 0.98974 1.00000
RegionR7 0.865 4.677 0.07352 0.52252
RegionR8 0.452 4.677 0.42659 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -4.819 4.677 0.42998 1.00000
RegenerationR2 0.107 4.677 0.80234 0.99080
RegenerationR3 0.021 4.677 0.96581 1.00000
RegenerationR4 -0.261 4.677 0.60869 0.91693
RegenerationR5 0.559 4.677 0.24317 0.67660
RegenerationR6 0.189 4.677 0.69919 0.92392
RegenerationBL 0.008 4.677 0.98680 1.00000
RegenerationTP -0.883 4.677 0.10665 0.50488


Genes with expression patterns similar to MligTC455_52422

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_52422 1020 21.26 Mlig455_009135

Neo: -

Age: -

 PLEKHA5 6 1.000 1.000 1.000 1.000 1.000 1.000 Mlig455_009135 {REF} {Length: 5145} {TRANSSPLICED} {Pfam: PH domain [PF00169.31, score=47.0]} {Human: ENSG00000052126, PLEKHA5, pleckstrin homology domain containing A5, [RH, Score=59.3, Expect=4e-08]} {Mouse: ENSMUSG00000030231, Plekha5, pleckstrin homology domain containing, family A member 5, [RH, Score=59.3, Expect=1e-08]} {Dmel: FBgn0085412, CG34383, [RH, Score=64.7, Expect=3e-10]} {Smed: dd_Smed_v6_6425_0_1, dd_Smed_v6_6425_0_1, [RH, Score=126, Expect=1e-29]} {RNA1509_4182, RNA1509_55385} {RNA1310_2271, RNA1509_4182, RNA1509_55385} {RNA1509_4182, RNA1509_55385, RNA815_8180.1}
2. MligTC455_41039 820 17.08 Mlig455_012731

Neo: -

Age: -

 FLRT1 1.703 - - 0.973 - 0.730 - Mlig455_012731 {REF} {Length: 2045} {Pfam: Leucine rich repeat [PF13855.8, score=60.6]; Leucine Rich repeats (2 copies) [PF12799.9, score=47.8]; Leucine-rich repeat [PF14580.8, score=22.6]} {Human: ENSG00000126500, FLRT1, fibronectin leucine rich transmembrane protein 1, [Score=67.4, Expect=3e-11]; ENSG00000187122, SLIT1, slit guidance ligand 1, [Score=67.0, Expect=6e-11]; ENSG00000011465, DCN, decorin, [Score=66.2, Expect=4e-11]; ENSG00000184347, SLIT3, slit guidance ligand 3, [Score=65.5, Expect=2e-10]} {Mouse: ENSMUSG00000056427, Slit3, slit guidance ligand 3, [Score=67.0, Expect=4e-11]; ENSMUSG00000025020, Slit1, slit guidance ligand 1, [Score=66.6, Expect=6e-11]; ENSMUSG00000047787, Flrt1, fibronectin leucine rich transmembrane protein 1, [Score=66.2, Expect=6e-11]} {Dmel: FBgn0036995, atk, artichoke, [Score=64.7, Expect=2e-10]} {Celegans: WBGene00020649, sma-10, Leucine-rich repeats and immunoglobulin-like domains protein sma-10, [Score=72.4, Expect=4e-13]} {Smed: dd_Smed_v6_12111_0_1, dd_Smed_v6_12111_0_1, [Score=64.3, Expect=1e-10]} {RNA1509_45627, RNA1509_8353} {RNA1310_14213, RNA1509_45627, RNA1509_8353} {RNA1509_45627, RNA1509_8353, RNA815_5583}
3. MligTC455_43572 61 1.26 Mlig455_037945

Neo: -

Age: Up-Down-Down, logFC(26M/2M)=-0.663

 VCX3B 1.666 - - 0.955 0.711 - - Mlig455_037945 {REF} {Length: 2194} {Human: ENSG00000205642, VCX3B, variable charge X-linked 3B, [Score=54.7, Expect=8e-09]} {RNA1509_22457} {RNA1310_35286} {RNA815_20576}
4. MligTC455_45616 438 9.12 Mlig455_000933

Neo: -

Age: -

 ABHD16A 0.966 - - - 0.966 - - Mlig455_000933 {REF} {Length: 2366} {TRANSSPLICED} {Pfam: alpha/beta hydrolase fold [PF00561.22, score=28.1]; Serine aminopeptidase, S33 [PF12146.10, score=19.0]} {Human: ENSG00000236063, ABHD16A, abhydrolase domain containing 16A, [RH, Score=337, Expect=3e-109]; ENSG00000206403, ABHD16A, abhydrolase domain containing 16A, [RH, Score=337, Expect=3e-109]; ENSG00000230475, ABHD16A, abhydrolase domain containing 16A, [RH, Score=337, Expect=3e-109]; ENSG00000224552, ABHD16A, abhydrolase domain containing 16A, [RH, Score=337, Expect=3e-109]; ENSG00000204427, ABHD16A, abhydrolase domain containing 16A, [RH, Score=337, Expect=3e-109]; ENSG00000231488, ABHD16A, abhydrolase domain containing 16A, [RH, Score=337, Expect=3e-109]; ENSG00000235676, ABHD16A, abhydrolase domain containing 16A, [RH, Score=337, Expect=3e-109]} {Mouse: ENSMUSG00000007036, Abhd16a, abhydrolase domain containing 16A, [Score=330, Expect=2e-106]} {Dmel: FBgn0035519, CG1309, [Score=266, Expect=2e-82]} {Celegans: WBGene00018131, F37A4.1, [Score=191, Expect=3e-54]} {Smed: dd_Smed_v6_4938_0_1, dd_Smed_v6_4938_0_1, [Score=337, Expect=9e-110]} {RNA1509_5901, RNA1509_59580} {RNA1310_8031, RNA1509_59580} {RNA1509_59580, RNA815_11851}
5. MligTC455_17095 47 0.99 Mlig455_035386

Neo: -

Age: Down-Up-Down, logFC(26M/2M)=-0.679

 0.958 - - - 0.958 - - Mlig455_035386 {REF} {Length: 2131} {NoTransDecoderORF} {RNA1509_25834} {RNA1310_12389} {RNA815_4410.1}
6. MligTC455_23216 287 5.98 Mlig455_058939

Neo: -

Age: -

Region-enriched R4: 2.172/0.02122

 HEXA 0.954 - - - 0.954 - - Mlig455_058939 {REF} {Length: 3816} {TRANSSPLICED} {Pfam: Glycosyl hydrolase family 20, catalytic domain [PF00728.24, score=247.3]; Putative carbohydrate binding domain [PF03173.15, score=27.3]} {Human: ENSG00000213614, HEXA, hexosaminidase subunit alpha, [Score=77.4, Expect=5e-14]} {Mouse: ENSMUSG00000025232, Hexa, hexosaminidase A, [Score=79.3, Expect=9e-15]} {Dmel: FBgn0041629, Hexo2, Hexosaminidase 2, [Score=77.0, Expect=4e-14]} {Celegans: WBGene00020509, hex-1, Beta-hexosaminidase A, [Score=64.3, Expect=3e-10]} {Smed: dd_Smed_v6_3964_0_2, dd_Smed_v6_3964_0_2, [Score=103, Expect=2e-22]} {RNA1509_42952} {RNA1310_2171} {RNA815_1707.1}
7. MligTC455_42509 499 10.4 Mlig455_010494, Mlig455_061884

Neo: -

Age: Down-Up-Up, logFC(26M/2M)=0.336

 REXO2 0.952 - - 0.952 - - -

Mlig455_010494 {REF} {Length: 1371} {TRANSSPLICED} {Pfam: Exonuclease [PF00929.26, score=108.0]} {Human: ENSG00000076043, REXO2, RNA exonuclease 2, [RH, Score=237, Expect=3e-79]} {Mouse: ENSMUSG00000032026, Rexo2, RNA exonuclease 2, [RH, Score=235, Expect=7e-79]} {Dmel: FBgn0039115, CG10214, [RH, Score=197, Expect=2e-64]} {Celegans: WBGene00007429, C08B6.8, Probable oligoribonuclease, [RH, Score=170, Expect=4e-54]} {RNA1509_13896} {RNA1310_55561} {RNA815_28857}

Mlig455_061884 {REF} {Length: 1374} {TRANSSPLICED} {Pfam: Exonuclease [PF00929.26, score=107.6]} {Human: ENSG00000076043, REXO2, RNA exonuclease 2, [RH, Score=236, Expect=5e-79]} {Mouse: ENSMUSG00000032026, Rexo2, RNA exonuclease 2, [RH, Score=234, Expect=1e-78]} {Dmel: FBgn0039115, CG10214, [RH, Score=194, Expect=5e-63]} {Celegans: WBGene00007429, C08B6.8, Probable oligoribonuclease, [RH, Score=169, Expect=2e-53]} {RNA1509_13896} {RNA1310_55561, RNA1509_13896} {RNA1509_13896, RNA815_28857}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA