M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_52427

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_52427 720 15.00 Mlig455_045448

Neo: -

Age: -

Region-enriched R7: 2.689/0.00000
Region-enriched R8: 1.670/0.01209
Region-enriched R2: 1.450/0.00964

Regeneration-downregulated BL: -3.866

Regeneration-depleted BL: -3.866

 Mlig455_045448 {REF} {Length: 984} {NoTransDecoderORF} {RNA1509_20465} {RNA1310_54985.1} {RNA815_28393.1}

Cumulative graph for MligTC455_52427

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -1.192 4.038 0.26361 0.91339
RegionR2 1.45 4.038 0.00033 0.00964
RegionR3 0.478 4.038 0.16649 0.68871
RegionR4 -2.803 4.038 0.00000 0.00000
RegionR5 -2.916 4.038 0.00000 0.00000
RegionR6 0.625 4.038 0.07864 0.51898
RegionR7 2.689 4.038 0.00000 0.00000
RegionR8 1.67 4.038 0.00016 0.01209

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -6.341 4.038 0.16593 0.90874
RegenerationR2 -0.575 4.038 0.10666 0.51286
RegenerationR3 -0.334 4.038 0.42493 0.81810
RegenerationR4 0.575 4.038 0.29897 0.74102
RegenerationR5 0.069 4.038 0.92106 1.00000
RegenerationR6 -1.859 4.038 0.00013 0.01076
RegenerationBL -3.866 4.038 0.00000 0.00000 Specific for BL: -3.866
RegenerationTP -1.261 4.038 0.00443 0.11043


Genes with expression patterns similar to MligTC455_52427

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_52427 720 15 Mlig455_045448

Neo: -

Age: -

Region-enriched R7: 2.689/0.00000
Region-enriched R8: 1.670/0.01209
Region-enriched R2: 1.450/0.00964

Regeneration-downregulated BL: -3.866

Regeneration-depleted BL: -3.866

 6 1.000 1.000 1.000 1.000 1.000 1.000 Mlig455_045448 {REF} {Length: 984} {NoTransDecoderORF} {RNA1509_20465} {RNA1310_54985.1} {RNA815_28393.1}
2. MligTC455_52426 1375 28.64 Mlig455_011045, Mlig455_011048

Neo: -

Age: -

Region-enriched R7: 2.652/0.00000
Region-enriched R8: 1.605/0.00536
Region-enriched R2: 1.262/0.03915

Regeneration-downregulated BL: -4.528

Regeneration-depleted BL: -4.528

 5.977 0.999 0.999 0.998 0.988 0.994 0.999

Mlig455_011045 {REF} {Length: 2012} {Pfam: Agrin NtA domain [PF03146.17, score=18.6]} {RNA1509_20465, RNA1509_28949} {RNA1310_31587, RNA1509_20465, RNA1509_28949} {RNA1509_20465, RNA1509_28949, RNA815_13600}

Mlig455_011048 {REF} {Length: 1847} {Pfam: Agrin NtA domain [PF03146.17, score=18.6]} {RNA1509_28949} {RNA1310_31587} {RNA815_13600}
3. MligTC455_49337 141 2.94 Mlig455_004942

Neo: -

Age: -

Region-enriched R2: 4.260/0.00004
Region-enriched R7: 4.073/0.00000
Region-enriched R6: 2.891/0.00737

 CA7 3.247 - 0.747 0.726 0.953 0.821 - Mlig455_004942 {REF} {Length: 2623} {Pfam: Eukaryotic-type carbonic anhydrase [PF00194.23, score=206.7]} {Human: ENSG00000168748, CA7, carbonic anhydrase 7, [Score=157, Expect=2e-45]} {Mouse: ENSMUSG00000031883, Car7, carbonic anhydrase 7, [Score=156, Expect=2e-45]} {Dmel: FBgn0027844, CAH1, Carbonic anhydrase 1, [Score=129, Expect=8e-35]} {Celegans: WBGene00000283, cah-5, Putative carbonic anhydrase 5, [Score=89.4, Expect=4e-20]} {Smed: dd_Smed_v6_11683_0_1, dd_Smed_v6_11683_0_1, [Score=160, Expect=1e-46]} {RNA1509_43765} {RNA1310_22186} {RNA815_18428}
4. MligTC455_07760 263 5.49 Mlig455_050264

Neo: -

Age: Down-Down-Up

Region-enriched R7: 4.077/0.00000
Region-enriched R8: 3.171/0.00732
Region-enriched R2: 2.637/0.02861

 2.699 - 0.888 0.837 - 0.974 - Mlig455_050264 {REF} {Length: 1509} {RNA1509_49826} {RNA1310_40090} {RNA815_20296.1}
5. MligTC455_48311 3195 66.57 Mlig455_007190, Mlig455_007200, Mlig455_007260

Neo: -

Age: logFC(26M/2M)=-0.211

Region-enriched R7: 3.482/0.00000
Region-enriched R8: 1.857/0.03355

Regeneration-downregulated BL: -3.047

Regeneration-depleted BL: -3.047

 SVOP 2.61 - 0.846 - 0.963 - 0.801

Mlig455_007190 {REF} {Length: 2867} {Pfam: Sugar (and other) transporter [PF00083.26, score=120.5]; Major Facilitator Superfamily [PF07690.18, score=78.0]; MFS_1 like family [PF12832.9, score=25.1]} {Human: ENSG00000166111, SVOP, SV2 related protein, [Score=286, Expect=5e-90]} {Mouse: ENSMUSG00000042078, Svop, SV2 related protein, [Score=280, Expect=9e-88]} {Dmel: FBgn0034956, CG4324, [Score=239, Expect=3e-73]} {Celegans: WBGene00014021, svop-1, Putative transporter svop-1, [Score=268, Expect=8e-84]} {Smed: dd_Smed_v6_3645_0_1, dd_Smed_v6_3645_0_1, [Score=294, Expect=2e-94]} {RNA1509_40948} {RNA1310_7004.1} {RNA815_5149}

Mlig455_007200 {REF} {Length: 2805} {Pfam: Major Facilitator Superfamily [PF07690.18, score=39.9]; Sugar (and other) transporter [PF00083.26, score=32.1]} {Human: ENSG00000166111, SVOP, SV2 related protein, [Score=140, Expect=4e-37]} {Mouse: ENSMUSG00000042078, Svop, SV2 related protein, [Score=144, Expect=2e-38]} {Dmel: FBgn0034956, CG4324, [Score=103, Expect=2e-24]} {Celegans: WBGene00014021, svop-1, Putative transporter svop-1, [Score=131, Expect=4e-34]} {Smed: dd_Smed_v6_3645_0_1, dd_Smed_v6_3645_0_1, [Score=150, Expect=2e-41]} {RNA1509_56107} {RNA1310_7004.1} {RNA815_11918}

Mlig455_007260 {REF} {Length: 2807} {Pfam: Sugar (and other) transporter [PF00083.26, score=117.7]; Major Facilitator Superfamily [PF07690.18, score=102.3]} {Human: ENSG00000166111, SVOP, SV2 related protein, [Score=311, Expect=2e-99]} {Mouse: ENSMUSG00000042078, Svop, SV2 related protein, [Score=306, Expect=2e-97]} {Dmel: FBgn0034956, CG4324, [Score=254, Expect=1e-78]} {Celegans: WBGene00014021, svop-1, Putative transporter svop-1, [Score=298, Expect=4e-95]} {Smed: dd_Smed_v6_3645_0_1, dd_Smed_v6_3645_0_1, [Score=321, Expect=3e-104]} {RNA1509_34029, RNA1509_40948, RNA1509_56107} {RNA1310_7004.1, RNA1509_34029, RNA1509_40948, RNA1509_56107} {RNA1509_34029, RNA1509_40948, RNA1509_56107, RNA815_11918}
6. MligTC455_46724 138 2.87 Mlig455_066190

Neo: -

Age: -

 CHRNA3 2.458 - - 0.770 0.956 - 0.732 Mlig455_066190 {REF} {Length: 2364} {Pfam: Neurotransmitter-gated ion-channel transmembrane region [PF02932.18, score=274.6]; Neurotransmitter-gated ion-channel ligand binding domain [PF02931.25, score=248.6]} {Human: ENSG00000080644, CHRNA3, cholinergic receptor nicotinic alpha 3 subunit, [RH, Score=432, Expect=2e-146]} {Mouse: ENSMUSG00000027950, Chrnb2, cholinergic receptor, nicotinic, beta polypeptide 2 (neuronal), [RH, Score=413, Expect=6e-139]} {Dmel: FBgn0266347, nAChRalpha4, nicotinic Acetylcholine Receptor alpha4, [Score=531, Expect=0.0]} {Celegans: WBGene00006797, unc-63, Acetylcholine receptor subunit alpha-type unc-63, [Score=465, Expect=1e-159]} {Smed: dd_Smed_v6_14630_0_1, dd_Smed_v6_14630_0_1, [RH, Score=516, Expect=1e-178]} {RNA1509_36802} {RNA1310_6313.1} {RNA815_3014.1}
7. MligTC455_18011 38 0.8 Mlig455_066318

Neo: -

Age: -

 SLC35F4 1.748 - - - 0.762 0.986 - Mlig455_066318 {REF} {Length: 2334} {Human: ENSG00000151812, SLC35F4, solute carrier family 35 member F4, [RH, Score=80.1, Expect=2e-15]} {Mouse: ENSMUSG00000021852, Slc35f4, solute carrier family 35, member F4, [RH, Score=80.9, Expect=8e-16]} {Dmel: FBgn0259222, CG42322, [Score=117, Expect=2e-27]} {Smed: dd_Smed_v6_18554_0_1, dd_Smed_v6_18554_0_1, [RH, Score=94.4, Expect=8e-22]} {RNA1310_93042} {RNA815_44166}
8. MligTC455_46723 138 2.87 Mlig455_066171

Neo: -

Age: -

 CHRNA6 1.73 - - 0.770 0.960 - - Mlig455_066171 {REF} {Length: 1617} {Pfam: Neurotransmitter-gated ion-channel transmembrane region [PF02932.18, score=107.0]; Neurotransmitter-gated ion-channel ligand binding domain [PF02931.25, score=48.7]} {Human: ENSG00000147434, CHRNA6, cholinergic receptor nicotinic alpha 6 subunit, [Score=127, Expect=8e-32]; ENSG00000120903, CHRNA2, cholinergic receptor nicotinic alpha 2 subunit, [Score=123, Expect=2e-30]; ENSG00000080644, CHRNA3, cholinergic receptor nicotinic alpha 3 subunit, [Score=122, Expect=6e-30]} {Mouse: ENSMUSG00000031491, Chrna6, cholinergic receptor, nicotinic, alpha polypeptide 6, [Score=131, Expect=2e-33]} {Dmel: FBgn0266347, nAChRalpha4, nicotinic Acetylcholine Receptor alpha4, [Score=130, Expect=2e-33]} {Celegans: WBGene00006765, unc-29, Acetylcholine receptor subunit beta-type unc-29, [Score=92.0, Expect=4e-20]} {Smed: dd_Smed_v6_14630_0_1, dd_Smed_v6_14630_0_1, [Score=142, Expect=2e-37]} {RNA1509_55012} {RNA1310_6313.1} {RNA815_3014.1}
9. MligTC455_38373 320 6.66 Mlig455_042133, Mlig455_042976

Neo: -

Age: logFC(26M/2M)=-0.351

 NELL2 1.712 - 0.760 - - 0.952 -

Mlig455_042133 {REF} {Length: 5474} {Pfam: Calcium-binding EGF domain [PF07645.17, score=80.2]; EGF domain [PF12947.9, score=68.8]; von Willebrand factor type C domain [PF00093.20, score=66.5]; Complement Clr-like EGF-like [PF12662.9, score=41.2]; Human growth factor-like EGF [PF12661.9, score=30.9]; EGF-like domain [PF00008.29, score=27.8]; Concanavalin A-like lectin/glucanases superfamily [PF13385.8, score=25.7]; Laminin G domain [PF02210.26, score=21.5]; MSP1 EGF domain 1 [PF12946.9, score=21.5]} {Human: ENSG00000184613, NELL2, neural EGFL like 2, [RH, Score=464, Expect=7e-149]; ENSG00000165973, NELL1, neural EGFL like 1, [RH, Score=461, Expect=5e-148]} {Mouse: ENSMUSG00000022454, Nell2, NEL-like 2, [RH, Score=461, Expect=4e-148]; ENSMUSG00000055409, Nell1, NEL-like 1, [RH, Score=458, Expect=3e-147]} {Dmel: FBgn0053196, dpy, dumpy, [Score=117, Expect=3e-26]} {Celegans: WBGene00022816, fbn-1, FBN-1A.1; FiBrilliN homolog, [Score=107, Expect=2e-23]} {Smed: dd_Smed_v6_11653_0_1, dd_Smed_v6_11653_0_1, [RH, Score=271, Expect=1e-77]} {RNA1509_8941} {RNA1310_3623.1, RNA1509_8941} {RNA1509_8941, RNA815_1148}

Mlig455_042976 {REF} {Length: 293} {NoTransDecoderORF} {RNA1310_124059}
10. MligTC455_53637 3377 70.36 Mlig455_026738, Mlig455_051749

Neo: -

Age: Down-Down-Up

Region-enriched R8: 2.667/0.00000
Region-enriched R7: 2.043/0.00000
Region-enriched R2: 1.081/0.04085

Regeneration-downregulated BL: -2.506

Regeneration-depleted BL: -2.506

 1.697 - - - 0.736 0.961 -

Mlig455_026738 {REF} {Length: 1503} {RNA1509_14499} {RNA1310_49321, RNA1509_14499} {RNA1509_14499, RNA815_24877}

Mlig455_051749 {REF} {Length: 639} {RNA1509_14499} {RNA1310_49321} {RNA815_24877}
11. MligTC455_15500 74 1.54 Mlig455_044618

Neo: -

Age: -

 GABBR2 1.658 - - - 0.705 0.953 - Mlig455_044618 {REF} {Length: 2484} {Pfam: 7 transmembrane sweet-taste receptor of 3 GCPR [PF00003.24, score=138.4]; Receptor family ligand binding region [PF01094.30, score=57.8]} {Human: ENSG00000136928, GABBR2, gamma-aminobutyric acid type B receptor subunit 2, [Score=184, Expect=2e-48]} {Mouse: ENSMUSG00000039809, Gabbr2, gamma-aminobutyric acid (GABA) B receptor, 2, [Score=182, Expect=8e-48]} {Dmel: FBgn0027575, GABA-B-R2, metabotropic GABA-B receptor subtype 2, [Score=173, Expect=9e-45]} {Celegans: WBGene00022675, gbb-2, GABA B receptor subunit; GABAB2 receptor subunit, [Score=165, Expect=1e-42]} {Smed: dd_Smed_v6_51663_0_1, dd_Smed_v6_51663_0_1, [Score=122, Expect=4e-31]} {RNA1310_32095} {RNA815_22947}
12. MligTC455_22743 237 4.94 Mlig455_010647, Mlig455_010652, Mlig455_010750

Neo: -

Age: -

 ERBIN 0.985 - - - - 0.985 -

Mlig455_010647 {REF} {Length: 596} {Pfam: Leucine rich repeat [PF13855.8, score=40.8]; Leucine Rich repeats (2 copies) [PF12799.9, score=30.4]; Leucine-rich repeat [PF14580.8, score=18.5]} {RNA1509_53260} {RNA1310_7797} {RNA815_12315}

Mlig455_010652 {REF} {Length: 2595} {TRANSSPLICED} {Pfam: Leucine Rich repeats (2 copies) [PF12799.9, score=99.9]; Leucine rich repeat [PF13855.8, score=69.7]; Leucine-rich repeat [PF14580.8, score=24.2]; Leucine Rich repeat [PF13516.8, score=21.7]} {Human: ENSG00000112851, ERBIN, erbb2 interacting protein, [Score=77.0, Expect=2e-14]; ENSG00000139263, LRIG3, leucine rich repeats and immunoglobulin like domains 3, [Score=73.2, Expect=5e-13]} {Mouse: ENSMUSG00000040367, Lrrd1, leucine rich repeats and death domain containing 1, [Score=87.8, Expect=7e-18]} {Dmel: FBgn0263289, scrib, scribbled, [Score=75.5, Expect=5e-14]} {Celegans: WBGene00006593, tol-1, TOLl (Drosophila) family, [Score=69.3, Expect=3e-12]} {Smed: dd_Smed_v6_5405_0_1, dd_Smed_v6_5405_0_1, [Score=71.2, Expect=1e-13]} {RNA1509_34182, RNA1509_53260} {RNA1310_7797, RNA1509_34182, RNA1509_53260} {RNA1509_34182, RNA1509_53260, RNA815_12315}

Mlig455_010750 {REF} {Length: 2613} {TRANSSPLICED} {Pfam: Leucine Rich repeats (2 copies) [PF12799.9, score=99.0]; Leucine rich repeat [PF13855.8, score=69.5]; Leucine Rich repeat [PF13516.8, score=20.6]; Leucine-rich repeat [PF14580.8, score=19.8]} {Human: ENSG00000112851, ERBIN, erbb2 interacting protein, [Score=76.6, Expect=6e-14]; ENSG00000139263, LRIG3, leucine rich repeats and immunoglobulin like domains 3, [Score=72.8, Expect=9e-13]} {Mouse: ENSMUSG00000040367, Lrrd1, leucine rich repeats and death domain containing 1, [Score=87.8, Expect=1e-17]} {Dmel: FBgn0263289, scrib, scribbled, [Score=74.7, Expect=1e-13]} {Celegans: WBGene00006593, tol-1, TOLl (Drosophila) family, [Score=68.6, Expect=7e-12]} {Smed: dd_Smed_v6_5405_0_1, dd_Smed_v6_5405_0_1, [Score=70.9, Expect=2e-13]} {RNA1509_53260} {RNA1310_7797} {RNA815_12315}
13. MligTC455_51872 25 0.51 Mlig455_002762, Mlig455_063364

Neo: -

Age: -

 0.969 - - - - - 0.969

Mlig455_002762 {REF} {Length: 1093} {RNA1310_80259} {RNA815_47710}

Mlig455_063364 {REF} {Length: 1091} {RNA1310_80259} {RNA815_47710}
14. MligTC455_12794 32 0.67 Mlig455_052083

Neo: -

Age: logFC(26M/2M)=-0.315

 CSNK1D 0.964 - - - - 0.964 - Mlig455_052083 {REF} {Length: 2825} {Pfam: Protein kinase domain [PF00069.27, score=97.9]; Protein tyrosine and serine/threonine kinase [PF07714.19, score=58.1]; Fungal protein kinase [PF17667.3, score=29.9]; Phosphotransferase enzyme family [PF01636.25, score=21.1]} {Human: ENSG00000141551, CSNK1D, casein kinase 1 delta, [RH, Score=578, Expect=0.0]; ENSG00000283900, TPTEP2-CSNK1E, TPTEP2-CSNK1E readthrough, [RH, Score=573, Expect=0.0]; ENSG00000213923, CSNK1E, casein kinase 1 epsilon, [RH, Score=573, Expect=0.0]} {Mouse: ENSMUSG00000025162, Csnk1d, casein kinase 1, delta, [RH, Score=578, Expect=0.0]; ENSMUSG00000022433, Csnk1e, casein kinase 1, epsilon, [RH, Score=574, Expect=0.0]} {Dmel: FBgn0002413, dco, discs overgrown, [RH, Score=529, Expect=0.0]} {Celegans: WBGene00002203, kin-20, Casein kinase I isoform delta, [RH, Score=499, Expect=1e-176]} {Smed: dd_Smed_v6_4561_0_1, dd_Smed_v6_4561_0_1, [RH, Score=577, Expect=0.0]} {RNA1509_19984, RNA1509_33497} {RNA1310_23975, RNA1509_19984, RNA1509_33497} {RNA1509_19984, RNA1509_33497, RNA815_12595}
15. MligTC455_39568 31 0.64 Mlig455_022671, Mlig455_022682

Neo: -

Age: Down-Up-Down

 0.964 - - - - 0.964 -

Mlig455_022671 {REF} {Length: 2569} {TRANSSPLICED} {RNA1509_43258} {RNA1310_36819} {RNA815_33097}

Mlig455_022682 {REF} {Length: 2984} {TRANSSPLICED} {RNA1509_15535} {RNA1310_36819} {RNA815_33097}
16. MligTC455_03930 234 4.88 Mlig455_000392, Mlig455_000393, Mlig455_067965

Neo: -

Age: -

 STOM, STOML3 0.962 - - - 0.962 - -

Mlig455_000392 {REF} {Length: 1261} {Pfam: SPFH domain / Band 7 family [PF01145.27, score=49.4]} {Human: ENSG00000133115, STOML3, stomatin like 3, [Score=121, Expect=8e-34]; ENSG00000148175, STOM, stomatin, [Score=119, Expect=7e-33]} {Mouse: ENSMUSG00000027744, Stoml3, stomatin (Epb7.2)-like 3, [Score=120, Expect=2e-33]; ENSMUSG00000026880, Stom, stomatin, [Score=116, Expect=5e-32]} {Dmel: FBgn0260657, CG42540, [Score=120, Expect=3e-32]} {Celegans: WBGene00006068, sto-6, STOmatin, [Score=147, Expect=4e-44]} {Smed: dd_Smed_v6_6562_0_1, dd_Smed_v6_6562_0_1, [Score=154, Expect=7e-46]} {RNA1509_39119} {RNA1310_36188} {RNA815_4616.2}

Mlig455_000393 {REF} {Length: 314} {NoTransDecoderORF} {RNA1310_87113} {RNA815_45729}

Mlig455_067965 {REF} {Length: 2337} {Pfam: SPFH domain / Band 7 family [PF01145.27, score=113.5]} {Human: ENSG00000148175, STOM, stomatin, [Score=296, Expect=4e-98]; ENSG00000133115, STOML3, stomatin like 3, [Score=295, Expect=2e-97]} {Mouse: ENSMUSG00000026880, Stom, stomatin, [Score=293, Expect=5e-97]; ENSMUSG00000027744, Stoml3, stomatin (Epb7.2)-like 3, [Score=293, Expect=4e-97]} {Dmel: FBgn0260657, CG42540, [Score=310, Expect=4e-101]} {Celegans: WBGene00003166, mec-2, Mechanosensory protein 2, [Score=306, Expect=7e-101]} {Smed: dd_Smed_v6_16206_0_1, dd_Smed_v6_16206_0_1, [RH, Score=373, Expect=4e-128]} {RNA1509_39119} {RNA1310_36188} {RNA815_7860}
17. MligTC455_19442 244 5.09 Mlig455_002080

Neo: -

Age: logFC(26M/2M)=-0.526

 0.96 - - - - 0.960 - Mlig455_002080 {REF} {Length: 2265} {Pfam: Aldehyde ferredoxin oxidoreductase, N-terminal domain [PF02730.17, score=18.6]} {RNA1509_40470} {RNA1310_22476.3} {RNA815_16128}
18. MligTC455_40800 67 1.41 Mlig455_028979

Neo: -

Age: logFC(26M/2M)=-0.452

 DAPK1 0.96 - - - - - 0.960 Mlig455_028979 {REF} {Length: 4667} {Pfam: Ankyrin repeats (3 copies) [PF12796.9, score=123.2]; Ankyrin repeats (many copies) [PF13637.8, score=90.4]; Ankyrin repeats (many copies) [PF13857.8, score=83.4]; Ankyrin repeat [PF00023.32, score=79.6]; Ankyrin repeat [PF13606.8, score=67.2]; Death domain [PF00531.24, score=55.4]; C-terminal of Roc, COR, domain [PF16095.7, score=23.0]} {Human: ENSG00000196730, DAPK1, death associated protein kinase 1, [Score=433, Expect=1e-130]} {Mouse: ENSMUSG00000021559, Dapk1, death associated protein kinase 1, [Score=429, Expect=5e-129]} {Dmel: FBgn0261788, Ank2, Ankyrin 2, [Score=124, Expect=3e-28]} {Celegans: WBGene00003400, dapk-1, Death-associated protein kinase dapk-1, [Score=462, Expect=4e-145]} {Smed: dd_Smed_v6_9475_0_1, dd_Smed_v6_9475_0_1, [Score=795, Expect=0.0]} {RNA1509_32836} {RNA1310_4314, RNA1509_32836} {RNA1509_32836, RNA815_16120}
19. MligTC455_56601 14 0.3 Mlig455_009462

Neo: -

Age: -

 0.954 - - - - 0.954 - Mlig455_009462 {REF} {Length: 565} {NoTransDecoderORF}
20. MligTC455_32521 203 4.23 Mlig455_040932

Neo: -

Age: Down-Down-Up

Region-enriched R8: 3.877/0.00012
Region-enriched R2: 3.007/0.00212

 0.953 - - - - - 0.953 Mlig455_040932 {REF} {Length: 1862} {RNA1310_21335.1} {RNA815_57481}
21. MligTC455_32613 115 2.4 Mlig455_019212

Neo: -

Age: logFC(26M/2M)=-0.399

 STAC 0.952 - - - 0.952 - - Mlig455_019212 {REF} {Length: 3658} {Pfam: Variant SH3 domain [PF14604.8, score=37.9]; SH3 domain [PF00018.30, score=37.8]; Variant SH3 domain [PF07653.19, score=22.2]} {Human: ENSG00000144681, STAC, SH3 and cysteine rich domain, [Score=64.3, Expect=3e-10]; ENSG00000141750, STAC2, SH3 and cysteine rich domain 2, [Score=63.2, Expect=1e-09]} {Mouse: ENSMUSG00000032502, Stac, src homology three (SH3) and cysteine rich domain, [Score=67.0, Expect=3e-11]} {Dmel: FBgn0263980, CG43729, [RH, Score=97.1, Expect=1e-20]} {Celegans: WBGene00006791, unc-57, Endophilin-A homolog, [Score=49.3, Expect=4e-07]} {Smed: dd_Smed_v6_14652_0_1, dd_Smed_v6_14652_0_1, [RH, Score=185, Expect=2e-48]} {RNA1509_45601} {RNA1310_13004, RNA1509_45601} {RNA1509_45601, RNA815_25263}
22. MligTC455_07836 27 0.57 Mlig455_047252

Neo: -

Age: -

 0.951 - - - - 0.951 - Mlig455_047252 {REF} {Length: 331} {NoTransDecoderORF} {tRNA: Val(CAC),pseudo, score=40.1} {RNA1509_21228} {RNA1310_20140} {RNA815_31014}
23. MligTC455_31673 2190 45.63 Mlig455_020494, Mlig455_020496, Mlig455_021456, Mlig455_022005, Mlig455_028753, Mlig455_029272, Mlig455_032615, Mlig455_035661, Mlig455_035663, Mlig455_040170, Mlig455_041027, Mlig455_042568, Mlig455_052047, Mlig455_052049, Mlig455_060462, Mlig455_060472, Mlig455_060475, Mlig455_062821, Mlig455_063990, Mlig455_071051, Mlig455_071053

Neo: -

Age: -

 0.951 - - - - 0.951 -

Mlig455_020494 {REF} {Length: 3502} {NoTransDecoderORF} {RNA1509_43132} {RNA1310_143.1} {RNA815_12188}

Mlig455_020496 {REF} {Length: 45} {NoTransDecoderORF} {RNA1509_51272} {RNA1310_18898} {RNA815_26166}

Mlig455_021456 {REF} {Length: 6612} {RNA1509_43132} {RNA1310_143.1} {RNA815_12188}

Mlig455_022005 {REF} {Length: 5643} {NoTransDecoderORF} {RNA1509_46} {RNA1310_143.1} {RNA815_12188}

Mlig455_028753 {REF} {Length: 4224} {NoTransDecoderORF} {RNA1509_43132} {RNA1310_143.1} {RNA815_12188}

Mlig455_029272 {REF} {Length: 842} {NoTransDecoderORF} {RNA1509_43624} {RNA1310_9389.2} {RNA815_12646}

Mlig455_032615 {REF} {Length: 1323} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_43132} {RNA1310_143.1} {RNA815_12188}

Mlig455_035661 {REF} {Length: 2146} {NoTransDecoderORF} {RNA1509_43132} {RNA1310_143.1} {RNA815_12188}

Mlig455_035663 {REF} {Length: 1967} {NoTransDecoderORF} {RNA1509_10119} {RNA1310_143.1} {RNA815_11686}

Mlig455_040170 {REF} {Length: 2245} {NoTransDecoderORF} {RNA1509_43132} {RNA1310_143.1} {RNA815_12188}

Mlig455_041027 {REF} {Length: 2951} {RNA1509_46} {RNA1310_143.1} {RNA815_12188}

Mlig455_042568 {REF} {Length: 3443} {NoTransDecoderORF} {RNA1509_46, RNA1509_6737} {RNA1310_143.1, RNA1509_6737} {RNA1509_6737, RNA815_12188}

Mlig455_052047 {REF} {Length: 2362} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_40407} {RNA1310_143.1, RNA1509_40407} {RNA1509_40407, RNA815_12188}

Mlig455_052049 {REF} {Length: 2860} {NoTransDecoderORF} {RNA1509_43132} {RNA1310_143.1} {RNA815_12188}

Mlig455_060462 {REF} {Length: 1740} {NoTransDecoderORF} {RNA1509_43132} {RNA1310_143.1} {RNA815_12188}

Mlig455_060472 {REF} {Length: 2246} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_43132} {RNA1310_143.1} {RNA815_12188}

Mlig455_060475 {REF} {Length: 320} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_43624} {RNA1310_18898} {RNA815_12646}

Mlig455_062821 {REF} {Length: 1726} {NoTransDecoderORF} {RNA1509_43132} {RNA1310_143.1} {RNA815_12188}

Mlig455_063990 {REF} {Length: 1968} {NoTransDecoderORF} {RNA1509_10119, RNA1509_22165, RNA1509_43624} {RNA1310_143.1, RNA1509_10119, RNA1509_22165, RNA1509_43624} {RNA1509_10119, RNA1509_22165, RNA1509_43624, RNA815_11686}

Mlig455_071051 {REF} {Length: 1795} {NoTransDecoderORF} {RNA1509_43132} {RNA1310_143.1} {RNA815_12188}

Mlig455_071053 {REF} {Length: 339} {NoTransDecoderORF} {RNA1509_51208} {RNA1310_52445} {RNA815_23064}
24. MligTC455_32292 66 1.38 Mlig455_028882

Neo: -

Age: -

Region-enriched R2: 3.876/0.02790

 GRIK2 0.951 - - - - 0.951 - Mlig455_028882 {REF} {Length: 3574} {Pfam: Ligand-gated ion channel [PF00060.28, score=188.3]; Receptor family ligand binding region [PF01094.30, score=116.7]; Ligated ion channel L-glutamate- and glycine-binding site [PF10613.11, score=103.3]; Bacterial extracellular solute-binding proteins, family 3 [PF00497.22, score=84.0]} {Human: ENSG00000164418, GRIK2, glutamate ionotropic receptor kainate type subunit 2, [Score=609, Expect=0.0]; ENSG00000163873, GRIK3, glutamate ionotropic receptor kainate type subunit 3, [Score=585, Expect=0.0]; ENSG00000171189, GRIK1, glutamate ionotropic receptor kainate type subunit 1, [Score=583, Expect=0.0]} {Mouse: ENSMUSG00000056073, Grik2, glutamate receptor, ionotropic, kainate 2 (beta 2), [Score=609, Expect=0.0]; ENSMUSG00000022935, Grik1, glutamate receptor, ionotropic, kainate 1, [Score=581, Expect=0.0]; ENSMUSG00000001985, Grik3, glutamate receptor, ionotropic, kainate 3, [Score=580, Expect=0.0]} {Dmel: FBgn0039927, CG11155, [RH, Score=615, Expect=0.0]} {Celegans: WBGene00001614, glr-3, GLutamate Receptor family (AMPA), [Score=412, Expect=4e-129]} {Smed: dd_Smed_v6_8816_0_1, dd_Smed_v6_8816_0_1, [Score=471, Expect=1e-149]} {RNA1509_15645} {RNA1310_1989.1, RNA1509_15645} {RNA1509_15645, RNA815_797}
25. MligTC455_52286 301 6.27 Mlig455_051314

Neo: -

Age: Up-Down-Up, logFC(26M/2M)=0.320

 AGO2 0.951 - - - - 0.951 - Mlig455_051314 {REF} {Length: 4274} {Pfam: Piwi domain [PF02171.19, score=369.3]; Mid domain of argonaute [PF16487.7, score=114.6]; N-terminal domain of argonaute [PF16486.7, score=104.8]; PAZ domain [PF02170.24, score=82.1]; Argonaute linker 1 domain [PF08699.12, score=78.7]; Argonaute linker 2 domain [PF16488.7, score=48.4]} {Human: ENSG00000123908, AGO2, argonaute 2, RISC catalytic component, [RH, Score=1254, Expect=0.0]; ENSG00000092847, AGO1, argonaute 1, RISC catalytic component, [RH, Score=1230, Expect=0.0]; ENSG00000126070, AGO3, argonaute 3, RISC catalytic component, [RH, Score=1222, Expect=0.0]; ENSG00000134698, AGO4, argonaute 4, RISC catalytic component, [RH, Score=1199, Expect=0.0]} {Mouse: ENSMUSG00000036698, Ago2, argonaute RISC catalytic subunit 2, [RH, Score=1258, Expect=0.0]; ENSMUSG00000041530, Ago1, argonaute RISC catalytic subunit 1, [RH, Score=1230, Expect=0.0]; ENSMUSG00000028842, Ago3, argonaute RISC catalytic subunit 3, [RH, Score=1221, Expect=0.0]} {Dmel: FBgn0262739, AGO1, Argonaute-1, [RH, Score=1342, Expect=0.0]} {Celegans: WBGene00000105, alg-1, Argonaute-like, [RH, Score=1260, Expect=0.0]} {Smed: dd_Smed_v6_3861_0_1, dd_Smed_v6_3861_0_1, [RH, Score=1449, Expect=0.0]} {RNA1509_3358} {RNA1310_4477.1, RNA1509_3358} {RNA1509_3358, RNA815_1509.1}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA