M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_52523

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_52523 180 3.76 Mlig455_054997

Neo: Neoblast

Age: -

Region-enriched R5: 2.591/0.00156

 Mlig455_054997 {REF} {Length: 2466} {TRANSSPLICED} {RNA1509_25616, RNA1509_39451} {RNA1310_39324, RNA1509_25616, RNA1509_39451} {RNA1509_25616, RNA1509_39451, RNA815_26942.1}

Cumulative graph for MligTC455_52523

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -6.137 2.682 0.15384 0.77090
RegionR2 1.18 2.682 0.29861 0.68730
RegionR3 0.915 2.682 0.35465 0.89001
RegionR4 1.003 2.682 0.33762 0.65708
RegionR5 2.591 2.682 0.00009 0.00156
RegionR6 1.339 2.682 0.14233 0.67610
RegionR7 -1.373 2.682 0.99543 1.00000
RegionR8 0.482 2.682 0.68776 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 0.803 2.682 0.99989 1.00000
RegenerationR2 -0.988 2.682 0.17529 0.61596
RegenerationR3 0.209 2.682 0.78325 0.97659
RegenerationR4 -0.057 2.682 0.94427 1.00000
RegenerationR5 0.133 2.682 0.80805 0.99074
RegenerationR6 0.751 2.682 0.28934 0.63953
RegenerationBL -0.99 2.682 0.48916 0.85417
RegenerationTP 2.045 2.682 0.05182 0.37273


Genes with expression patterns similar to MligTC455_52523

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_52523 180 3.76 Mlig455_054997

Neo: Neoblast

Age: -

Region-enriched R5: 2.591/0.00156

 6 1.000 1.000 1.000 1.000 1.000 1.000 Mlig455_054997 {REF} {Length: 2466} {TRANSSPLICED} {RNA1509_25616, RNA1509_39451} {RNA1310_39324, RNA1509_25616, RNA1509_39451} {RNA1509_25616, RNA1509_39451, RNA815_26942.1}
2. MligTC455_37209 243 5.06 Mlig455_067142

Neo: -

Age: Down-Up-Down

Regeneration-downregulated BL: -7.404

Regeneration-depleted BL: -7.404

 1.695 - - - - 0.738 0.957 Mlig455_067142 {REF} {Length: 2808} {TRANSSPLICED} {Pfam: Methyltransferase domain [PF13489.8, score=26.1]} {RNA1509_11919} {RNA1310_5936.1, RNA1509_11919} {RNA1509_11919, RNA815_7982.1}
3. MligTC455_48885 124 2.59 Mlig455_015311

Neo: -

Age: Down-Up-Down

Region-enriched R2: 3.576/0.03178

 0.962 - - - - - 0.962 Mlig455_015311 {REF} {Length: 3189} {TRANSSPLICED} {Pfam: Oxidoreductase family, NAD-binding Rossmann fold [PF01408.24, score=51.9]; Oxidoreductase family, C-terminal alpha/beta domain [PF02894.19, score=29.7]} {RNA1509_15686} {RNA1310_3343.1} {RNA815_561.1}
4. MligTC455_52263 93 1.94 Mlig455_018235

Neo: -

Age: Up-Down-Up, logFC(26M/2M)=1.051

 GIT2 0.96 - - - - - 0.960 Mlig455_018235 {REF} {Length: 3103} {Pfam: G protein-coupled receptor kinase-interacting protein 1 C term [PF12205.10, score=91.6]; Coiled-coil domain-containing protein 106 [PF15794.7, score=22.0]} {Human: ENSG00000139436, GIT2, GIT ArfGAP 2, [Score=81.3, Expect=1e-15]; ENSG00000108262, GIT1, GIT ArfGAP 1, [Score=78.2, Expect=1e-14]} {Mouse: ENSMUSG00000041890, Git2, G protein-coupled receptor kinase-interactor 2, [RH, Score=76.6, Expect=6e-15]} {RNA1509_17579} {RNA1310_2666.1} {RNA815_17899}
5. MligTC455_30615 64 1.34 Mlig455_014504

Neo: -

Age: -

 FRMD7 0.958 - - - - - 0.958 Mlig455_014504 {REF} {Length: 1712} {TRANSSPLICED} {Pfam: FERM N-terminal domain [PF09379.12, score=60.6]; FERM central domain [PF00373.20, score=28.6]} {Human: ENSG00000165694, FRMD7, FERM domain containing 7, [Score=115, Expect=2e-29]} {Mouse: ENSMUSG00000036131, Frmd7, FERM domain containing 7, [Score=114, Expect=3e-29]; ENSMUSG00000034066, Farp2, FERM, RhoGEF and pleckstrin domain protein 2, [Score=109, Expect=2e-27]} {Dmel: FBgn0265082, Cdep, Chondrocyte-derived ezrin-like domain containing protein, [Score=125, Expect=3e-34]} {Celegans: WBGene00001490, frm-3, FERM domain (Protein4.1-ezrin-radixin-moesin) family, [Score=133, Expect=5e-36]} {Smed: dd_Smed_v6_14700_0_2, dd_Smed_v6_14700_0_2, [Score=157, Expect=1e-44]} {RNA1509_56475} {RNA1310_28132} {RNA815_12515}
6. MligTC455_03812 326 6.79 Mlig455_054999, Mlig455_059766, Mlig455_070314

Neo: Int S/G2/M

Age: Down-Up-Down

Region-enriched R5: 2.146/0.01549

 0.95 - - - - - 0.950

Mlig455_054999 {REF} {Length: 385} {NoTransDecoderORF} {RNA1509_49727} {RNA1310_115129} {RNA815_51033}

Mlig455_059766 {REF} {Length: 1733} {TRANSSPLICED} {Pfam: Basic region leucine zipper [PF07716.17, score=21.1]} {RNA1509_23883} {RNA1310_27272, RNA1509_23883} {RNA1509_23883, RNA815_26918}

Mlig455_070314 {REF} {Length: 1588} {TRANSSPLICED} {RNA1509_23883, RNA1509_49727} {RNA1310_27272, RNA1509_49727} {RNA1509_49727, RNA815_26918}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA