M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_52789

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_52789 17 0.35 Mlig455_056992

Neo: -

Age: Up-Up-Down

 Mlig455_056992 {REF} {Length: 1429} {NoTransDecoderORF} {RNA1509_30491} {RNA1310_8974.1, RNA1509_30491} {RNA1509_30491, RNA815_6818.1}

Cumulative graph for MligTC455_52789

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -9.017 0.715 0.99966 1.00000
RegionR2 2.852 0.715 0.99990 1.00000
RegionR3 3.537 0.715 0.99994 1.00000
RegionR4 0.977 0.715 0.99990 1.00000
RegionR5 3.561 0.715 0.99989 1.00000
RegionR6 2.944 0.715 0.99991 1.00000
RegionR7 0.628 0.715 0.99997 1.00000
RegionR8 -5.482 0.715 0.99970 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 0.218 0.715 0.99993 1.00000
RegenerationR2 2.925 0.715 0.21424 0.66136
RegenerationR3 -0.566 0.715 0.99992 1.00000
RegenerationR4 3.444 0.715 0.00525 0.10293
RegenerationR5 0.665 0.715 0.35999 0.77128
RegenerationR6 3.443 0.715 0.01157 0.13214
RegenerationBL 4.669 0.715 0.01123 0.10791
RegenerationTP 1.505 0.715 1.00000 1.00000


Genes with expression patterns similar to MligTC455_52789

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_52789 17 0.35 Mlig455_056992

Neo: -

Age: Up-Up-Down

 1 - - - - 1.000 - Mlig455_056992 {REF} {Length: 1429} {NoTransDecoderORF} {RNA1509_30491} {RNA1310_8974.1, RNA1509_30491} {RNA1509_30491, RNA815_6818.1}
2. MligTC455_10625 24 0.49 Mlig455_019775

Neo: -

Age: -

 0.996 - - - - 0.996 - Mlig455_019775 {REF} {Length: 40} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_24187} {RNA1310_9556}
3. MligTC455_34187 39 0.81 Mlig455_063626

Neo: Irradiation

Age: Up-Down-Down

 0.973 - - - - 0.973 - Mlig455_063626 {REF} {Length: 3746} {Pfam: Endonuclease-reverse transcriptase [PF14529.8, score=22.4]} {RNA1509_33402} {RNA1310_4029, RNA1509_33402} {RNA1509_33402, RNA815_8861}
4. MligTC455_13386 5 0.1 Mlig455_030046

Neo: -

Age: -

 0.971 - - - - 0.971 - Mlig455_030046 {REF} {Length: 4201} {Pfam: Amiloride-sensitive sodium channel [PF00858.26, score=138.3]} {Smed: dd_Smed_v6_23028_0_1, dd_Smed_v6_23028_0_1, [Score=123, Expect=1e-29]} {RNA1310_55606} {RNA815_37627}
5. MligTC455_18084 18 0.37 Mlig455_037882

Neo: -

Age: -

 0.97 - - - - 0.970 - Mlig455_037882 {REF} {Length: 542} {RNA1509_39458} {RNA1310_6322} {RNA815_7873}
6. MligTC455_20830 20 0.42 Mlig455_028482, Mlig455_028509

Neo: -

Age: Down-Down-Up, logFC(26M/2M)=-0.579

 0.97 - - - - 0.970 -

Mlig455_028482 {REF} {Length: 1511} {Smed: dd_Smed_v6_1574_6_40, dd_Smed_v6_1574_6_40, [Score=44.3, Expect=1e-06]} {RNA1509_29748} {RNA1310_37473} {RNA815_993.1}

Mlig455_028509 {REF} {Length: 2750} {Smed: dd_Smed_v6_1574_6_44, dd_Smed_v6_1574_6_44, [Score=41.2, Expect=5e-06]} {RNA1509_29748} {RNA1310_37473} {RNA815_38075}
7. MligTC455_07011 12 0.25 Mlig455_067984

Neo: -

Age: -

 0.969 - - - - 0.969 - Mlig455_067984 {REF} {Length: 1608} {Pfam: Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=29.5]} {RNA1509_16377} {RNA1310_5710.1} {RNA815_6291.1}
8. MligTC455_07010 11 0.22 Mlig455_030210

Neo: -

Age: -

 0.965 - - - - 0.965 - Mlig455_030210 {REF} {Length: 1494} {Pfam: Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=30.4]} {RNA1509_16377} {RNA1310_5710.1} {RNA815_15609}
9. MligTC455_09584 6 0.13 Mlig455_041918

Neo: -

Age: -

 0.965 - - - - 0.965 - Mlig455_041918 {REF} {Length: 554} {NoTransDecoderORF}
10. MligTC455_21869 25 0.53 Mlig455_026145

Neo: -

Age: -

 TRPC4 0.962 - - - - 0.962 - Mlig455_026145 {REF} {Length: 2414} {Human: ENSG00000133107, TRPC4, transient receptor potential cation channel subfamily C member 4, [Score=64.7, Expect=2e-11]} {Mouse: ENSMUSG00000027748, Trpc4, transient receptor potential cation channel, subfamily C, member 4, [Score=66.6, Expect=2e-12]} {Dmel: FBgn0032593, Trpgamma, Transient receptor potential cation channel gamma, [Score=75.5, Expect=2e-15]} {Smed: dd_Smed_v6_20495_0_1, dd_Smed_v6_20495_0_1, [Score=110, Expect=6e-28]} {RNA1509_42587} {RNA1310_16811.2} {RNA815_23789}
11. MligTC455_53058 20 0.42 Mlig455_068376

Neo: Int S/G2/M

Age: -

 0.962 - - - - 0.962 - Mlig455_068376 {REF} {Length: 4495} {Smed: dd_Smed_v6_2582_0_1, dd_Smed_v6_2582_0_1, [Score=61.2, Expect=3e-09]} {RNA1310_18760}
12. MligTC455_33436 58 1.22 Mlig455_002459, Mlig455_021352, Mlig455_049703

Neo: -

Age: -

 0.959 - - - - 0.959 -

Mlig455_002459 {REF} {Length: 162} {NoTransDecoderORF} {RNA1509_34375} {RNA1310_4694.1} {RNA815_29789}

Mlig455_021352 {REF} {Length: 316} {NoTransDecoderORF} {RNA1509_41110} {RNA1310_4694.1} {RNA815_29789}

Mlig455_049703 {REF} {Length: 3386} {Smed: dd_Smed_v6_18267_0_1, dd_Smed_v6_18267_0_1, [Score=56.2, Expect=6e-09]} {RNA1509_12203} {RNA1310_1239} {RNA815_9387}
13. MligTC455_39498 31 0.66 Mlig455_023998

Neo: -

Age: -

 0.959 - - - - 0.959 - Mlig455_023998 {REF} {Length: 1710} {RNA1509_47325} {RNA1310_31384} {RNA815_14653.1}
14. MligTC455_41249 61 1.27 Mlig455_010465

Neo: -

Age: Down-Down-Up

 0.955 - - - - 0.955 - Mlig455_010465 {REF} {Length: 2724} {RNA1310_39237} {RNA815_40339}
15. MligTC455_03195 100 2.07 Mlig455_025390

Neo: Germline

Age: -

 0.954 - - - - 0.954 - Mlig455_025390 {REF} {Length: 1048} {RNA1509_45596} {RNA1310_86585.2, RNA1509_45596} {RNA1509_45596, RNA815_45708.2}
16. MligTC455_09865 14 0.3 Mlig455_009335

Neo: -

Age: -

 0.95 - - - - 0.950 - Mlig455_009335 {REF} {Length: 206} {NoTransDecoderORF}
17. MligTC455_09899 21 0.44 Mlig455_044261

Neo: -

Age: -

 ITPKB 0.95 - - - - 0.950 - Mlig455_044261 {REF} {Length: 2246} {Pfam: Inositol polyphosphate kinase [PF03770.18, score=119.2]; Transposase IS4 [PF13843.8, score=47.0]} {Human: ENSG00000143772, ITPKB, inositol-trisphosphate 3-kinase B, [RH, Score=236, Expect=1e-65]} {Mouse: ENSMUSG00000038855, Itpkb, inositol 1,4,5-trisphosphate 3-kinase B, [Score=236, Expect=1e-65]; ENSMUSG00000003752, Itpkc, inositol 1,4,5-trisphosphate 3-kinase C, [Score=233, Expect=5e-66]} {Dmel: FBgn0032147, IP3K1, Inositol 1,4,5-triphosphate kinase 1, [RH, Score=211, Expect=1e-60]} {Celegans: WBGene00002979, lfe-2, Inositol-trisphosphate 3-kinase homolog, [Score=222, Expect=3e-65]} {Smed: dd_Smed_v6_3687_0_1, dd_Smed_v6_3687_0_1, [Score=219, Expect=4e-62]} {RNA1509_17014} {RNA1310_121915} {RNA815_8852}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA