M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_52836

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_52836 27 0.57 Mlig455_010274

Neo: -

Age: Up-Down-Down

 ADORA2A Mlig455_010274 {REF} {Length: 13750} {TRANSSPLICED} {Pfam: 7 transmembrane receptor (rhodopsin family) [PF00001.23, score=159.8]; WSC domain [PF01822.21, score=92.6]; Serpentine type 7TM GPCR chemoreceptor Srsx [PF10320.11, score=71.2]; Lectin C-type domain [PF00059.23, score=61.7]; Sushi repeat (SCR repeat) [PF00084.22, score=43.9]; UL45 protein, carbohydrate-binding C-type lectin-like [PF05473.14, score=32.2]; Serpentine type 7TM GPCR chemoreceptor Srv [PF10323.11, score=25.6]; Olfactory receptor [PF13853.8, score=21.6]} {Human: ENSG00000128271, ADORA2A, adenosine A2a receptor, [RH, Score=222, Expect=3e-62]} {Mouse: ENSMUSG00000020178, Adora2a, adenosine A2a receptor, [RH, Score=199, Expect=7e-55]; ENSMUSG00000018500, Adora2b, adenosine A2b receptor, [RH, Score=196, Expect=1e-54]} {Dmel: FBgn0039747, AdoR, Adenosine receptor, [RH, Score=184, Expect=5e-47]} {Celegans: WBGene00011878, ador-1, ADenOsine Receptor homolog, [RH, Score=123, Expect=2e-29]} {Smed: dd_Smed_v6_10325_0_1, dd_Smed_v6_10325_0_1, [Score=105, Expect=8e-23]} {RNA1509_22696} {RNA1310_515} {RNA815_2246}

Cumulative graph for MligTC455_52836

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -0.11 0.998 0.99982 1.00000
RegionR2 1.875 0.998 0.29354 0.68217
RegionR3 -0.547 0.998 0.99981 1.00000
RegionR4 -0.878 0.998 0.99977 1.00000
RegionR5 -0.791 0.998 0.99981 1.00000
RegionR6 1.114 0.998 0.27835 0.86814
RegionR7 -0.921 0.998 0.99979 1.00000
RegionR8 0.258 0.998 0.99983 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -2.018 0.998 0.99996 1.00000
RegenerationR2 0.876 0.998 0.53657 0.88681
RegenerationR3 0.997 0.998 0.50052 0.85734
RegenerationR4 2.396 0.998 0.10188 0.49390
RegenerationR5 -0.136 0.998 0.59533 0.90842
RegenerationR6 0.967 0.998 0.66808 0.90788
RegenerationBL -2.558 0.998 0.99983 1.00000
RegenerationTP 3.811 0.998 0.21682 0.65977


Genes with expression patterns similar to MligTC455_52836

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_52836 27 0.57 Mlig455_010274

Neo: -

Age: Up-Down-Down

 ADORA2A 2 - - - 1.000 1.000 - Mlig455_010274 {REF} {Length: 13750} {TRANSSPLICED} {Pfam: 7 transmembrane receptor (rhodopsin family) [PF00001.23, score=159.8]; WSC domain [PF01822.21, score=92.6]; Serpentine type 7TM GPCR chemoreceptor Srsx [PF10320.11, score=71.2]; Lectin C-type domain [PF00059.23, score=61.7]; Sushi repeat (SCR repeat) [PF00084.22, score=43.9]; UL45 protein, carbohydrate-binding C-type lectin-like [PF05473.14, score=32.2]; Serpentine type 7TM GPCR chemoreceptor Srv [PF10323.11, score=25.6]; Olfactory receptor [PF13853.8, score=21.6]} {Human: ENSG00000128271, ADORA2A, adenosine A2a receptor, [RH, Score=222, Expect=3e-62]} {Mouse: ENSMUSG00000020178, Adora2a, adenosine A2a receptor, [RH, Score=199, Expect=7e-55]; ENSMUSG00000018500, Adora2b, adenosine A2b receptor, [RH, Score=196, Expect=1e-54]} {Dmel: FBgn0039747, AdoR, Adenosine receptor, [RH, Score=184, Expect=5e-47]} {Celegans: WBGene00011878, ador-1, ADenOsine Receptor homolog, [RH, Score=123, Expect=2e-29]} {Smed: dd_Smed_v6_10325_0_1, dd_Smed_v6_10325_0_1, [Score=105, Expect=8e-23]} {RNA1509_22696} {RNA1310_515} {RNA815_2246}
2. MligTC455_13588 43 0.9 Mlig455_070234

Neo: -

Age: -

 0.979 - - - - 0.979 - Mlig455_070234 {REF} {Length: 857} {Pfam: Tup N-terminal [PF08581.12, score=24.8]} {RNA1310_118445}
3. MligTC455_28138 1190 24.79 Mlig455_022674, Mlig455_032517

Neo: -

Age: Up-Down-Down

 0.966 - - - - 0.966 -

Mlig455_022674 {REF} {Length: 3801} {TRANSSPLICED} {Smed: dd_Smed_v6_17025_0_1, dd_Smed_v6_17025_0_1, [Score=43.9, Expect=6e-06]} {RNA1509_59938} {RNA1310_850} {RNA815_1208.1}

Mlig455_032517 {REF} {Length: 3495} {TRANSSPLICED} {Smed: dd_Smed_v6_17025_0_1, dd_Smed_v6_17025_0_1, [Score=43.9, Expect=6e-06]} {RNA1509_1582} {RNA1310_850} {RNA815_1208.1}
4. MligTC455_11935 46 0.95 Mlig455_019034, Mlig455_055667

Neo: -

Age: -

 0.965 - - - 0.965 - -

Mlig455_019034 {REF} {Length: 388} {NoTransDecoderORF} {RNA1310_120597}

Mlig455_055667 {REF} {Length: 1563} {NoTransDecoderORF} {RNA1509_59554} {RNA1310_114069} {RNA815_41460.1}
5. MligTC455_32210 4 0.08 Mlig455_069723

Neo: -

Age: Down-Up-Up

 EFCAB7 0.962 - - - 0.962 - - Mlig455_069723 {REF} {Length: 1816} {Pfam: EF hand [PF00036.34, score=72.3]; EF-hand domain pair [PF13499.8, score=68.2]; EF hand [PF13202.8, score=64.2]; EF-hand domain [PF13405.8, score=64.2]; EF-hand domain pair [PF13833.8, score=48.5]; Secreted protein acidic and rich in cysteine Ca binding region [PF10591.11, score=24.5]; Cytoskeletal-regulatory complex EF hand [PF12763.9, score=20.7]; EF hand [PF14788.8, score=19.2]} {Human: ENSG00000203965, EFCAB7, EF-hand calcium binding domain 7, [Score=117, Expect=4e-27]} {Mouse: ENSMUSG00000091898, Tnnc1, troponin C, cardiac/slow skeletal, [Score=79.3, Expect=6e-17]} {Dmel: FBgn0000253, Cam, Calmodulin, [Score=62.4, Expect=3e-11]} {Celegans: WBGene00000552, cmd-1, Calmodulin, [Score=62.4, Expect=2e-11]} {Smed: dd_Smed_v6_12168_0_1, dd_Smed_v6_12168_0_1, [Score=132, Expect=7e-33]} {RNA1509_55933} {RNA1310_1543.2} {RNA815_2194}
6. MligTC455_36765 37 0.78 Mlig455_060967

Neo: -

Age: -

 0.96 - - - 0.960 - - Mlig455_060967 {REF} {Length: 6411} {Pfam: Protein of unknown function (DUF1759) [PF03564.17, score=61.4]} {Smed: dd_Smed_v6_10245_0_1, dd_Smed_v6_10245_0_1, [RH, Score=63.5, Expect=9e-13]} {RNA1509_55800} {RNA1310_1066} {RNA815_13195}
7. MligTC455_51859 192 3.99 Mlig455_003003, Mlig455_005354, Mlig455_011084, Mlig455_058466, Mlig455_068502

Neo: -

Age: Up-Down-Up

 0.959 - - - - 0.959 -

Mlig455_003003 {REF} {Length: 882} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_36726} {RNA1310_25116.1} {RNA815_23626.1}

Mlig455_005354 {REF} {Length: 4940} {RNA1509_36726} {RNA1310_25116.1} {RNA815_23626.1}

Mlig455_011084 {REF} {Length: 1734} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_36726} {RNA1310_25116.2} {RNA815_23626.1}

Mlig455_058466 {REF} {Length: 880} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_36726} {RNA1310_25116.1} {RNA815_23626.1}

Mlig455_068502 {REF} {Length: 611} {RNA1509_36726} {RNA1310_45140} {RNA815_23626.1}
8. MligTC455_24154 248 5.18 Mlig455_040483, Mlig455_040489

Neo: Irradiation

Age: -

 0.957 - - - 0.957 - -

Mlig455_040483 {REF} {Length: 931} {Pfam: F5/8 type C domain [PF00754.27, score=23.2]} {Smed: dd_Smed_v6_71482_0_1, dd_Smed_v6_71482_0_1, [Score=45.1, Expect=3e-06]} {RNA1509_25498} {RNA1310_35087} {RNA815_15678.1}

Mlig455_040489 {REF} {Length: 920} {Pfam: F5/8 type C domain [PF00754.27, score=23.4]} {Smed: dd_Smed_v6_71482_0_1, dd_Smed_v6_71482_0_1, [Score=48.1, Expect=3e-07]} {RNA1509_25498} {RNA1310_33494} {RNA815_15678.1}
9. MligTC455_33110 163 3.39 Mlig455_067737

Neo: -

Age: -

 DYRK2 0.956 - - - 0.956 - - Mlig455_067737 {REF} {Length: 3142} {TRANSSPLICED} {Pfam: Protein kinase domain [PF00069.27, score=189.6]; Protein tyrosine and serine/threonine kinase [PF07714.19, score=87.9]; Phosphotransferase enzyme family [PF01636.25, score=21.6]; ABC1 atypical kinase-like domain [PF03109.18, score=21.5]} {Human: ENSG00000127334, DYRK2, dual specificity tyrosine phosphorylation regulated kinase 2, [Score=617, Expect=0.0]} {Mouse: ENSMUSG00000028630, Dyrk2, dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2, [Score=620, Expect=0.0]} {Dmel: FBgn0027101, Dyrk3, Dual-specificity tyrosine phosphorylation-regulated kinase 3, [Score=535, Expect=0.0]} {Celegans: WBGene00003150, mbk-2, Dual specificity tyrosine-phosphorylation-regulated kinase mbk-2, [RH, Score=561, Expect=0.0]} {Smed: dd_Smed_v6_10966_0_1, dd_Smed_v6_10966_0_1, [RH, Score=615, Expect=0.0]} {RNA1509_23393, RNA1509_59338} {RNA1310_17132, RNA1509_59338} {RNA1509_59338, RNA815_26752}
10. MligTC455_23289 16 0.33 Mlig455_009867

Neo: -

Age: -

 SLC24A2 0.955 - - - 0.955 - - Mlig455_009867 {REF} {Length: 3300} {Pfam: Sodium/calcium exchanger protein [PF01699.26, score=173.4]; Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=23.7]} {Human: ENSG00000155886, SLC24A2, solute carrier family 24 member 2, [Score=271, Expect=3e-80]} {Mouse: ENSMUSG00000037996, Slc24a2, solute carrier family 24 (sodium/potassium/calcium exchanger), member 2, [Score=272, Expect=8e-81]} {Dmel: FBgn0265767, zyd, zydeco, [Score=145, Expect=1e-36]} {Celegans: WBGene00003569, ncx-4, Na/Ca eXchangers, [Score=138, Expect=5e-34]} {Smed: dd_Smed_v6_9736_0_1, dd_Smed_v6_9736_0_1, [Score=285, Expect=1e-86]} {RNA1509_40109} {RNA1310_100512} {RNA815_2786.1}
11. MligTC455_32100 28 0.57 Mlig455_009386

Neo: -

Age: Down-Down-Down, logFC(26M/2M)=-0.596

 0.955 - - - - 0.955 - Mlig455_009386 {REF} {Length: 6501} {Pfam: SHQ1 protein [PF04925.17, score=20.2]} {RNA1509_32552} {RNA1310_15329} {RNA815_6647}
12. MligTC455_05344 31 0.64 Mlig455_034283, Mlig455_060101

Neo: -

Age: -

 PIF1 0.951 - - - 0.951 - -

Mlig455_034283 {REF} {Length: 906} {Pfam: PIF1-like helicase [PF05970.16, score=96.0]; UvrD-like helicase C-terminal domain [PF13538.8, score=30.1]; Helicase [PF02689.16, score=19.1]} {Human: ENSG00000140451, PIF1, PIF1 5'-to-3' DNA helicase, [Score=82.4, Expect=2e-17]} {Mouse: ENSMUSG00000041064, Pif1, PIF1 5'-to-3' DNA helicase, [Score=81.3, Expect=4e-17]} {Dmel: FBgn0031540, Pif1, Pif1 ortholog, [Score=58.5, Expect=1e-09]} {Celegans: WBGene00021577, Y46B2A.2, [Score=139, Expect=2e-37]} {Smed: dd_Smed_v6_19520_0_6, dd_Smed_v6_19520_0_6, [Score=74.7, Expect=2e-17]} {RNA1310_72478}

Mlig455_060101 {REF} {Length: 2472} {Pfam: PIF1-like helicase [PF05970.16, score=341.4]; AAA domain [PF13604.8, score=51.8]; UvrD-like helicase C-terminal domain [PF13538.8, score=27.1]; AAA domain [PF13245.8, score=21.4]; Helicase [PF02689.16, score=17.1]} {Human: ENSG00000140451, PIF1, PIF1 5'-to-3' DNA helicase, [Score=128, Expect=4e-30]} {Mouse: ENSMUSG00000041064, Pif1, PIF1 5'-to-3' DNA helicase, [Score=123, Expect=1e-28]} {Dmel: FBgn0031540, Pif1, Pif1 ortholog, [Score=111, Expect=5e-25]} {Celegans: WBGene00019136, F59H6.5, [Score=301, Expect=2e-87]} {Smed: dd_Smed_v6_16842_0_1, dd_Smed_v6_16842_0_1, [Score=114, Expect=3e-26]} {RNA1310_72478}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA