Data search
Results for MligTC455_52837
| Cluster | Total UMI counts | Global CPM | Transcripts | Categories | Human homolog | Annotation |
|---|---|---|---|---|---|---|
| MligTC455_52837 | 1068 | 22.24 | Mlig455_013511 | Neo: - Age: - |
Mlig455_013511 {REF} {Length: 3100} {TRANSSPLICED} {Pfam: Sodium:neurotransmitter symporter family [PF00209.20, score=46.6]} {Mouse: ENSMUSG00000030108, Slc6a13, solute carrier family 6 (neurotransmitter transporter, GABA), member 13, [Score=53.1, Expect=8e-07]} {Smed: dd_Smed_v6_8649_0_1, dd_Smed_v6_8649_0_1, [RH, Score=320, Expect=2e-100]} {RNA1509_9991} {RNA1310_13150} {RNA815_2418} |
Cumulative graph for MligTC455_52837
Region-enriched expression
| Region | logFC | logCPM | Pvalue | FDR | Specificity |
|---|---|---|---|---|---|
| RegionR1 | -1.033 | 4.725 | 0.30871 | 0.95791 | |
| RegionR2 | -0.615 | 4.725 | 0.15151 | 0.48632 | |
| RegionR3 | -0.149 | 4.725 | 0.67465 | 1.00000 | |
| RegionR4 | 0.754 | 4.725 | 0.07611 | 0.25609 | |
| RegionR5 | -0.09 | 4.725 | 0.79502 | 1.00000 | |
| RegionR6 | 0.666 | 4.725 | 0.04914 | 0.41472 | |
| RegionR7 | -0.023 | 4.725 | 0.95906 | 1.00000 | |
| RegionR8 | 0.49 | 4.725 | 0.31073 | 0.94314 |
Regeneration-enriched expression
| Region | logFC | logCPM | PValue | FDR | Specificity |
|---|---|---|---|---|---|
| RegenerationR1 | -7.121 | 4.725 | 0.08816 | 0.79491 | |
| RegenerationR2 | 0.186 | 4.725 | 0.62574 | 0.92523 | |
| RegenerationR3 | -0.092 | 4.725 | 0.81971 | 0.98748 | |
| RegenerationR4 | -0.432 | 4.725 | 0.29787 | 0.74021 | |
| RegenerationR5 | 0.376 | 4.725 | 0.32644 | 0.74871 | |
| RegenerationR6 | -0.402 | 4.725 | 0.30533 | 0.65430 | |
| RegenerationBL | -0.476 | 4.725 | 0.26747 | 0.62655 | |
| RegenerationTP | -0.59 | 4.725 | 0.21567 | 0.65873 |
Genes with expression patterns similar to MligTC455_52837
| Nr. | Cluster | Total UMI counts | Global CPM | Transcripts | Categories | Human homolog | Σ Spearman correlations | Int1 | Int2 | Int3 | Reg1 | Reg2 | Reg3 | Annotation |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1. | MligTC455_52837 | 1068 | 22.24 | Mlig455_013511 | Neo: - Age: - |
6 | 1.000 | 1.000 | 1.000 | 1.000 | 1.000 | 1.000 | Mlig455_013511 {REF} {Length: 3100} {TRANSSPLICED} {Pfam: Sodium:neurotransmitter symporter family [PF00209.20, score=46.6]} {Mouse: ENSMUSG00000030108, Slc6a13, solute carrier family 6 (neurotransmitter transporter, GABA), member 13, [Score=53.1, Expect=8e-07]} {Smed: dd_Smed_v6_8649_0_1, dd_Smed_v6_8649_0_1, [RH, Score=320, Expect=2e-100]} {RNA1509_9991} {RNA1310_13150} {RNA815_2418} | |
| 2. | MligTC455_24443 | 1211 | 25.22 | Mlig455_049305 | Neo: - Age: - |
CBL | 2.595 | - | - | - | 0.833 | 0.955 | 0.807 | Mlig455_049305 {REF} {Length: 3824} {TRANSSPLICED} {Pfam: CBL proto-oncogene N-terminal domain 1 [PF02262.18, score=154.6]; CBL proto-oncogene N-terminus, SH2-like domain [PF02762.16, score=143.2]; CBL proto-oncogene N-terminus, EF hand-like domain [PF02761.16, score=119.0]; Prokaryotic RING finger family 4 [PF14447.8, score=47.7]; Zinc finger, C3HC4 type (RING finger) [PF13920.8, score=42.6]; Ring finger domain [PF13639.8, score=30.9]; RuvA, C-terminal domain [PF07499.15, score=28.4]; UBA/TS-N domain [PF00627.33, score=27.9]; Zinc finger, C3HC4 type (RING finger) [PF00097.27, score=26.7]; Zinc finger, C3HC4 type (RING finger) [PF13923.8, score=25.5]; zinc-RING finger domain [PF14634.8, score=23.9]; RING-type zinc-finger [PF13445.8, score=21.1]; zinc finger of C3HC4-type, RING [PF15227.8, score=19.0]} {Human: ENSG00000110395, CBL, Cbl proto-oncogene, [RH, Score=501, Expect=9e-167]; ENSG00000114423, CBLB, Cbl proto-oncogene B, [RH, Score=491, Expect=2e-161]} {Mouse: ENSMUSG00000034342, Cbl, Casitas B-lineage lymphoma, [RH, Score=503, Expect=2e-167]; ENSMUSG00000022637, Cblb, Casitas B-lineage lymphoma b, [RH, Score=492, Expect=4e-162]} {Dmel: FBgn0020224, Cbl, Cbl proto-oncogene, [RH, Score=488, Expect=8e-162]} {Celegans: WBGene00004829, sli-1, Sli-1 protein; Suppressor of LIneage defect, [RH, Score=392, Expect=8e-129]} {Smed: dd_Smed_v6_6780_0_1, dd_Smed_v6_6780_0_1, [RH, Score=390, Expect=2e-128]} {RNA1509_28235, RNA1509_30150, RNA1509_6124} {RNA1310_10100, RNA1509_28235, RNA1509_30150, RNA1509_6124} {RNA1509_28235, RNA1509_30150, RNA1509_6124, RNA815_6568} |
| 3. | MligTC455_34703 | 1260 | 26.25 | Mlig455_056484 | Neo: - |
0.962 | - | - | - | - | 0.962 | - | Mlig455_056484 {REF} {Length: 3030} {Smed: dd_Smed_v6_7428_0_2, dd_Smed_v6_7428_0_2, [Score=76.6, Expect=3e-14]} {RNA1509_22794} {RNA1310_7595} {RNA815_6440.1} | |
| 4. | MligTC455_26727 | 1247 | 25.97 | Mlig455_060871 | Neo: - Age: - |
SART1 | 0.961 | - | - | - | - | - | 0.961 | Mlig455_060871 {REF} {Length: 2743} {TRANSSPLICED} {Pfam: SART-1 family [PF03343.15, score=338.5]; HIND motif [PF19252.1, score=50.0]} {Human: ENSG00000175467, SART1, SART1, U4/U6.U5 tri-snRNP-associated protein 1, [RH, Score=167, Expect=3e-42]} {Mouse: ENSMUSG00000039148, Sart1, squamous cell carcinoma antigen recognized by T cells 1, [RH, Score=139, Expect=2e-33]} {Dmel: FBgn0032388, CG6686, [RH, Score=328, Expect=1e-98]} {Celegans: WBGene00017605, F19F10.9, [RH, Score=122, Expect=2e-28]} {Smed: dd_Smed_v6_5108_0_1, dd_Smed_v6_5108_0_1, [RH, Score=219, Expect=3e-61]} {RNA1509_30777, RNA1509_33532, RNA1509_5567, RNA1509_59491} {RNA1310_7942, RNA1509_30777, RNA1509_33532, RNA1509_5567, RNA1509_59491} {RNA1509_30777, RNA1509_33532, RNA1509_5567, RNA1509_59491, RNA815_2272} |
Berezikov Lab - 2020-2021 © ERIBA