TomoSeq data search

Data search

Results for MligTC455_52909

Cluster

Total UMI counts

Global CPM

Transcripts

Categories

Human homolog

Annotation

MligTC455_52909

181

3.76

Mlig455_060606

Neo: -

Age: -

CUX1

Mlig455_060606 {REF} {Length: 3476} {TRANSSPLICED} {Pfam: CASP C terminal [PF08172.14, score=197.3]} {Human: ENSG00000257923, CUX1, cut like homeobox 1, [RH, Score=515, Expect=2e-174]} {Mouse: ENSMUSG00000029705, Cux1, cut-like homeobox 1, [RH, Score=513, Expect=1e-173]} {Celegans: WBGene00000464, ceh-44, Homeobox protein cut-like ceh-44, [RH, Score=199, Expect=6e-55]} {Smed: dd_Smed_v6_5685_0_1, dd_Smed_v6_5685_0_1, [RH, Score=432, Expect=1e-142]} {RNA1509_8859} {RNA1310_6125} {RNA815_10724}

Cumulative graph for MligTC455_52909

Region-enriched expression

Region	logFC	logCPM	Pvalue	FDR	Specificity
RegionR1	-0.92	2.536	0.61409	1.00000
RegionR2	0.721	2.536	0.39825	0.79246
RegionR3	1.078	2.536	0.08276	0.50883
RegionR4	-0.918	2.536	0.21648	0.50375
RegionR5	0.394	2.536	0.48622	0.84961
RegionR6	0.373	2.536	0.56846	1.00000
RegionR7	0.569	2.536	0.48400	1.00000
RegionR8	-1.297	2.536	0.32579	0.95865

Regeneration-enriched expression

Region	logFC	logCPM	PValue	FDR	Specificity
RegenerationR1	-4.101	2.536	0.50212	1.00000
RegenerationR2	0.457	2.536	0.48146	0.86403
RegenerationR3	0.352	2.536	0.59609	0.90643
RegenerationR4	1.306	2.536	0.07294	0.42944
RegenerationR5	0.558	2.536	0.37921	0.78645
RegenerationR6	0.369	2.536	0.62263	0.88238
RegenerationBL	-4.579	2.536	0.05784	0.27912
RegenerationTP	0.573	2.536	0.61629	0.97016

Genes with expression patterns similar to MligTC455_52909

Nr.	Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Σ Spearman correlations	Int1	Int2	Int3	Reg1	Reg2	Reg3	Annotation
1.	MligTC455_52909	181	3.76	Mlig455_060606	Neo: - Age: -	CUX1	6	1.000	1.000	1.000	1.000	1.000	1.000	Mlig455_060606 {REF} {Length: 3476} {TRANSSPLICED} {Pfam: CASP C terminal [PF08172.14, score=197.3]} {Human: ENSG00000257923, CUX1, cut like homeobox 1, [RH, Score=515, Expect=2e-174]} {Mouse: ENSMUSG00000029705, Cux1, cut-like homeobox 1, [RH, Score=513, Expect=1e-173]} {Celegans: WBGene00000464, ceh-44, Homeobox protein cut-like ceh-44, [RH, Score=199, Expect=6e-55]} {Smed: dd_Smed_v6_5685_0_1, dd_Smed_v6_5685_0_1, [RH, Score=432, Expect=1e-142]} {RNA1509_8859} {RNA1310_6125} {RNA815_10724}
2.	MligTC455_04377	197	4.1	Mlig455_060376	Neo: - Age: -		2.58	-	0.753	0.872	-	-	0.955	Mlig455_060376 {REF} {Length: 813} {NoTransDecoderORF} {RNA1310_51021} {RNA815_31361}
3.	MligTC455_42403	494	10.29	Mlig455_024650	Neo: Irradiation Age: Up-Down-Down Region-enriched R4: 1.751/0.01806 Regeneration-downregulated BL: -7.078 Regeneration-depleted BL: -7.078	USP2	0.966	-	-	-	-	0.966	-	Mlig455_024650 {REF} {Length: 2792} {TRANSSPLICED} {Pfam: Ubiquitin carboxyl-terminal hydrolase [PF00443.31, score=245.9]; Ubiquitin carboxyl-terminal hydrolase [PF13423.8, score=56.9]} {Human: ENSG00000036672, USP2, ubiquitin specific peptidase 2, [RH, Score=287, Expect=4e-90]} {Mouse: ENSMUSG00000032010, Usp2, ubiquitin specific peptidase 2, [RH, Score=288, Expect=3e-90]} {Dmel: FBgn0031187, Usp2, Ubiquitin specific protease 2, [RH, Score=291, Expect=1e-89]} {Celegans: WBGene00013506, usp-3, Ubiquitinyl hydrolase 1, [RH, Score=166, Expect=2e-45]} {Smed: dd_Smed_v6_7150_0_1, dd_Smed_v6_7150_0_1, [RH, Score=332, Expect=1e-107]} {RNA1509_5139} {RNA1310_18344, RNA1509_5139} {RNA1509_5139, RNA815_13152}
4.	MligTC455_49209	970	20.2	Mlig455_028940	Neo: - Age: Down-Up-Down, logFC(26M/2M)=-0.332 Region-enriched R4: 1.562/0.00297		0.959	-	-	-	-	-	0.959	Mlig455_028940 {REF} {Length: 2736} {Pfam: Tudor domain [PF00567.26, score=103.1]} {RNA1509_45779, RNA1509_6444} {RNA1310_4547.1, RNA1509_45779} {RNA1509_45779, RNA815_4209}
5.	MligTC455_41223	75	1.57	Mlig455_064371, Mlig455_064398	Neo: - Age: Down-Up-Up, logFC(26M/2M)=0.711	TNKS2	0.952	-	-	-	-	-	0.952	Mlig455_064371 {REF} {Length: 1874} {Pfam: Poly(ADP-ribose) polymerase catalytic domain [PF00644.22, score=109.1]; ADP-Ribosyltransferase in polyvalent proteins [PF18760.3, score=22.4]} {Human: ENSG00000107854, TNKS2, tankyrase 2, [Score=69.3, Expect=8e-13]; ENSG00000173273, TNKS, tankyrase, [Score=66.6, Expect=7e-12]; ENSG00000285372, AC270292.3, tankyrase, [Score=66.6, Expect=7e-12]} {Mouse: ENSMUSG00000024811, Tnks2, tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase 2, [Score=68.9, Expect=9e-13]; ENSMUSG00000031529, Tnks, tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase, [Score=66.6, Expect=6e-12]} {Dmel: FBgn0027508, Tnks, tankyrase, [Score=69.3, Expect=5e-13]} {Celegans: WBGene00004049, parp-1, Poly(ADP-ribose) polymerase pme-1, [Score=66.2, Expect=1e-12]} {Smed: dd_Smed_v6_10338_0_1, dd_Smed_v6_10338_0_1, [Score=69.3, Expect=3e-13]} {RNA1509_52186} {RNA1310_24914.1} {RNA815_11069} Mlig455_064398 {REF} {Length: 854} {Pfam: Poly(ADP-ribose) polymerase catalytic domain [PF00644.22, score=104.6]} {Human: ENSG00000107854, TNKS2, tankyrase 2, [Score=67.4, Expect=1e-12]; ENSG00000173273, TNKS, tankyrase, [Score=64.7, Expect=1e-11]; ENSG00000285372, AC270292.3, tankyrase, [Score=64.3, Expect=2e-11]} {Mouse: ENSMUSG00000024811, Tnks2, tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase 2, [Score=66.6, Expect=2e-12]; ENSMUSG00000031529, Tnks, tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase, [Score=64.3, Expect=1e-11]} {Dmel: FBgn0027508, Tnks, tankyrase, [Score=67.8, Expect=7e-13]} {Celegans: WBGene00004049, parp-1, Poly(ADP-ribose) polymerase pme-1, [Score=65.5, Expect=8e-13]} {Smed: dd_Smed_v6_8547_0_1, dd_Smed_v6_8547_0_1, [Score=65.9, Expect=1e-12]} {RNA1509_52186} {RNA1310_24914.1} {RNA815_11069}
6.	MligTC455_37734	209	4.35	Mlig455_026065, Mlig455_037309	Neo: - Age: Down-Up-Up, logFC(26M/2M)=0.415 Region-enriched R2: 3.701/0.01497		0.95	-	-	0.950	-	-	-	Mlig455_026065 {REF} {Length: 2262} {NoTransDecoderORF} {RNA1509_29718} {RNA1310_43342, RNA1509_29718} {RNA1509_29718, RNA815_21104} Mlig455_037309 {REF} {Length: 1432} {NoTransDecoderORF} {RNA1509_29718} {RNA1310_43342} {RNA815_21104}

Berezikov Lab - 2020-2021 © ERIBA