M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_53113

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_53113 1458 30.37 Mlig455_002613

Neo: -

Age: -

Region-enriched R4: 2.104/0.00626

 MAP3K12 Mlig455_002613 {REF} {Length: 3132} {TRANSSPLICED} {Pfam: Protein tyrosine and serine/threonine kinase [PF07714.19, score=153.4]; Protein kinase domain [PF00069.27, score=129.5]} {Human: ENSG00000139625, MAP3K12, mitogen-activated protein kinase kinase kinase 12, [Score=250, Expect=2e-70]} {Mouse: ENSMUSG00000023050, Map3k12, mitogen-activated protein kinase kinase kinase 12, [Score=249, Expect=3e-70]} {Dmel: FBgn0036896, wnd, wallenda, [Score=248, Expect=2e-69]} {Celegans: WBGene00001008, dlk-1, Mitogen-activated protein kinase kinase kinase dlk-1, [Score=198, Expect=2e-54]} {Smed: dd_Smed_v6_8838_0_1, dd_Smed_v6_8838_0_1, [Score=209, Expect=4e-56]} {RNA1509_29308, RNA1509_37353, RNA1509_8431} {RNA1310_5009, RNA1509_29308, RNA1509_37353, RNA1509_8431} {RNA1509_29308, RNA1509_37353, RNA1509_8431, RNA815_13268}

Cumulative graph for MligTC455_53113

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -8.057 5.235 0.00321 0.18276
RegionR2 0.92 5.235 0.24236 0.61832
RegionR3 1.363 5.235 0.02288 0.25716
RegionR4 2.104 5.235 0.00053 0.00626
RegionR5 1.313 5.235 0.02854 0.12522
RegionR6 1.153 5.235 0.07932 0.52080
RegionR7 0.701 5.235 0.41171 1.00000
RegionR8 0.503 5.235 0.59622 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 6.156 5.235 0.15056 0.89174
RegenerationR2 0.321 5.235 0.37208 0.79734
RegenerationR3 -0.291 5.235 0.44720 0.83056
RegenerationR4 -0.351 5.235 0.38939 0.80712
RegenerationR5 0.239 5.235 0.51962 0.86965
RegenerationR6 -0.141 5.235 0.71826 0.93454
RegenerationBL -0.772 5.235 0.09472 0.36156
RegenerationTP -0.129 5.235 0.79756 1.00000


Genes with expression patterns similar to MligTC455_53113

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_53113 1458 30.37 Mlig455_002613

Neo: -

Age: -

Region-enriched R4: 2.104/0.00626

 MAP3K12 6 1.000 1.000 1.000 1.000 1.000 1.000 Mlig455_002613 {REF} {Length: 3132} {TRANSSPLICED} {Pfam: Protein tyrosine and serine/threonine kinase [PF07714.19, score=153.4]; Protein kinase domain [PF00069.27, score=129.5]} {Human: ENSG00000139625, MAP3K12, mitogen-activated protein kinase kinase kinase 12, [Score=250, Expect=2e-70]} {Mouse: ENSMUSG00000023050, Map3k12, mitogen-activated protein kinase kinase kinase 12, [Score=249, Expect=3e-70]} {Dmel: FBgn0036896, wnd, wallenda, [Score=248, Expect=2e-69]} {Celegans: WBGene00001008, dlk-1, Mitogen-activated protein kinase kinase kinase dlk-1, [Score=198, Expect=2e-54]} {Smed: dd_Smed_v6_8838_0_1, dd_Smed_v6_8838_0_1, [Score=209, Expect=4e-56]} {RNA1509_29308, RNA1509_37353, RNA1509_8431} {RNA1310_5009, RNA1509_29308, RNA1509_37353, RNA1509_8431} {RNA1509_29308, RNA1509_37353, RNA1509_8431, RNA815_13268}
2. MligTC455_25018 1343 27.99 Mlig455_008176

Neo: -

Age: Down-Up-Up

 TGM4 1.851 0.889 - - 0.962 - - Mlig455_008176 {REF} {Length: 2648} {Pfam: Transglutaminase family [PF00868.22, score=57.4]; Transglutaminase-like superfamily [PF01841.21, score=54.3]; Transglutaminase family, C-terminal ig like domain [PF00927.24, score=38.6]} {Human: ENSG00000281886, TGM4, transglutaminase 4, [Score=348, Expect=2e-109]; ENSG00000163810, TGM4, transglutaminase 4, [Score=348, Expect=2e-109]; ENSG00000104055, TGM5, transglutaminase 5, [Score=331, Expect=1e-102]} {Mouse: ENSMUSG00000027401, Tgm3, transglutaminase 3, E polypeptide, [Score=327, Expect=1e-101]; ENSMUSG00000027403, Tgm6, transglutaminase 6, [Score=327, Expect=2e-101]; ENSMUSG00000025787, Tgm4, transglutaminase 4 (prostate), [Score=324, Expect=1e-100]; ENSMUSG00000022218, Tgm1, transglutaminase 1, K polypeptide, [Score=319, Expect=2e-97]; ENSMUSG00000053675, Tgm5, transglutaminase 5, [Score=314, Expect=3e-96]} {Dmel: FBgn0031975, Tg, Transglutaminase, [Score=343, Expect=7e-107]} {RNA1509_47119, RNA1509_8950} {RNA1310_8015.1, RNA1509_47119, RNA1509_8950} {RNA1509_47119, RNA1509_8950, RNA815_2840}
3. MligTC455_42673 862 17.96 Mlig455_017086

Neo: -

Age: Down-Down-Up

 1.693 - - - 0.736 0.957 - Mlig455_017086 {REF} {Length: 1828} {Pfam: Baculovirus polyhedron envelope protein, PEP, C terminus [PF04513.14, score=40.6]; TATA element modulatory factor 1 DNA binding [PF12329.10, score=31.9]; Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 [PF10473.11, score=31.8]; Laminin Domain II [PF06009.14, score=31.1]; Crescentin protein [PF19220.2, score=30.6]; Bacterial protein of unknown function (DUF948) [PF06103.13, score=30.4]; Formin Homology 2 Domain [PF02181.25, score=30.2]; Intra-flagellar transport protein 57 [PF10498.11, score=29.8]; Protein of unknown function (DUF1664) [PF07889.14, score=28.6]; Growth-arrest specific micro-tubule binding [PF13851.8, score=28.6]; Domain of unknown function (DUF4201) [PF13870.8, score=27.2]; Autophagy protein 16 (ATG16) [PF08614.13, score=25.7]; Septation ring formation regulator, EzrA [PF06160.14, score=25.2]; Myelin regulatory factor ICA domain [PF13887.8, score=24.9]; TPR/MLP1/MLP2-like protein [PF07926.14, score=24.8]; Biogenesis of lysosome-related organelles complex-1 subunit 2 [PF10046.11, score=24.7]; BRE1 E3 ubiquitin ligase [PF08647.13, score=24.6]; Haemolysin XhlA [PF10779.11, score=24.6]; AAA domain [PF13166.8, score=24.6]; Seryl-tRNA synthetase N-terminal domain [PF02403.24, score=23.9]; Vps51/Vps67 [PF08700.13, score=23.9]; Domain of unknown function (DUF2935) [PF11155.10, score=23.9]; Vps53-like, N-terminal [PF04100.14, score=23.3]; Protein of unknown function (DUF713) [PF05218.16, score=23.3]; BAR domain of APPL family [PF16746.7, score=23.2]; Apolipoprotein A1/A4/E domain [PF01442.20, score=22.9]; Cholesterol uptake porter CUP1 of Mce4, putative [PF11887.10, score=22.7]; Exonuclease VII, large subunit [PF02601.17, score=22.3]; Uncharacterized conserved protein [PF10241.11, score=22.2]; Initiation control protein YabA [PF06156.15, score=22.1]; Protein of unknown function (DUF3829) [PF12889.9, score=21.9]; Flagellar FliJ protein [PF02050.18, score=21.7]; Apg6 coiled-coil region [PF17675.3, score=21.7]; Golgi transport complex subunit 5 [PF10392.11, score=21.4]; Inhibitor of growth proteins N-terminal histone-binding [PF12998.9, score=21.3]; COG (conserved oligomeric Golgi) complex component, COG2 [PF06148.13, score=21.2]; Autophagy protein ATG17-like domain [PF04108.14, score=21.0]; Prefoldin subunit [PF01920.22, score=20.6]; Zinc finger-containing protein [PF10146.11, score=20.6]; Hydrophobic surface binding protein A [PF12296.10, score=20.5]; Protein of unknown function (DUF3450) [PF11932.10, score=20.4]; TATA element modulatory factor 1 TATA binding [PF12325.10, score=20.1]; Fungal N-terminal domain of STAND proteins [PF17111.7, score=19.9]; Cell division protein ZapB [PF06005.14, score=19.8]; Tape measure protein [PF20155.1, score=19.8]; Spc7 kinetochore protein [PF08317.13, score=19.4]; Afadin- and alpha -actinin-Binding [PF11559.10, score=19.4]; Fez1 [PF06818.17, score=19.3]; Uncharacterized conserved protein (DUF2203) [PF09969.11, score=19.3]; Protein of unknown function (DUF745) [PF05335.15, score=19.2]; RNA polymerase II transcription mediator complex subunit 9 [PF07544.15, score=19.2]; DASH complex subunit Dam1 [PF08653.12, score=19.2]; TMPIT-like protein [PF07851.15, score=19.0]; Spindle and kinetochore-associated protein 1 [PF07160.14, score=18.8]; Calcium binding and coiled-coil domain (CALCOCO1) like [PF07888.13, score=18.2]; Prominin [PF05478.13, score=17.8]; Myosin tail [PF01576.21, score=17.4]} {Mouse: ENSMUSG00000043183, Simc1, SUMO-interacting motifs containing 1, [Score=74.7, Expect=4e-16]} {RNA1509_46691} {RNA1310_4498.2, RNA1509_46691} {RNA1509_46691, RNA815_1649}
4. MligTC455_36614 481 10.01 Mlig455_002969, Mlig455_049084

Neo: -

Age: Up-Down-Down

 RNF13 0.961 - - - - - 0.961

Mlig455_002969 {REF} {Length: 682} {Pfam: Hydrophobic surface binding protein A [PF12296.10, score=21.2]; Flocculin repeat [PF00624.20, score=19.6]} {RNA1310_44296} {RNA815_35577}

Mlig455_049084 {REF} {Length: 3354} {TRANSSPLICED} {Pfam: RING-like zinc finger [PF17123.7, score=47.7]; Ring finger domain [PF13639.8, score=46.8]; Zinc finger, C3HC4 type (RING finger) [PF00097.27, score=32.1]; zinc-RING finger domain [PF14634.8, score=26.6]; Zinc finger, C3HC4 type (RING finger) [PF13923.8, score=25.5]; RING-type zinc-finger [PF13445.8, score=25.2]; RING-H2 zinc finger domain [PF12678.9, score=25.1]; Prokaryotic RING finger family 4 [PF14447.8, score=24.8]; PA domain [PF02225.24, score=23.2]; Zinc finger, C3HC4 type (RING finger) [PF13920.8, score=19.6]} {Human: ENSG00000082996, RNF13, ring finger protein 13, [RH, Score=192, Expect=2e-56]} {Mouse: ENSMUSG00000036503, Rnf13, ring finger protein 13, [RH, Score=195, Expect=8e-58]} {Dmel: FBgn0037442, godzilla, godzilla E3 ubiquitin protein ligase, [RH, Score=152, Expect=1e-40]} {Celegans: WBGene00007666, C18B12.4, [RH, Score=140, Expect=1e-36]} {Smed: dd_Smed_v6_10741_0_2, dd_Smed_v6_10741_0_2, [RH, Score=84.7, Expect=8e-18]} {RNA1509_13438} {RNA1310_21318.1} {RNA815_6447}
5. MligTC455_39546 1581 32.95 Mlig455_044795, Mlig455_055563

Neo: -

Age: Down-Up-Up

 PDE6D 0.958 - - - - - 0.958

Mlig455_044795 {REF} {Length: 2791} {TRANSSPLICED} {Pfam: GMP-PDE, delta subunit [PF05351.13, score=60.7]; Protein of unknown function (DUF2515) [PF10720.11, score=19.5]} {Human: ENSG00000156973, PDE6D, phosphodiesterase 6D, [RH, Score=137, Expect=5e-40]} {Mouse: ENSMUSG00000026239, Pde6d, phosphodiesterase 6D, cGMP-specific, rod, delta, [Score=140, Expect=2e-40]} {Dmel: FBgn0032059, PrBP, Prenyl-binding protein, [Score=105, Expect=4e-27]} {Celegans: WBGene00003966, pdl-1, Phosphodiesterase delta-like protein, [Score=119, Expect=2e-32]} {Smed: dd_Smed_v6_9168_0_9, dd_Smed_v6_9168_0_9, [Score=134, Expect=2e-38]} {RNA1509_4210, RNA1509_8099} {RNA1310_21694, RNA1509_8099} {RNA1509_8099, RNA815_8937}

Mlig455_055563 {REF} {Length: 1915} {TRANSSPLICED} {Pfam: GMP-PDE, delta subunit [PF05351.13, score=151.3]} {Human: ENSG00000156973, PDE6D, phosphodiesterase 6D, [RH, Score=244, Expect=5e-84]} {Mouse: ENSMUSG00000026239, Pde6d, phosphodiesterase 6D, cGMP-specific, rod, delta, [RH, Score=244, Expect=2e-84]} {Dmel: FBgn0032059, PrBP, Prenyl-binding protein, [RH, Score=191, Expect=3e-63]} {Celegans: WBGene00003966, pdl-1, Phosphodiesterase delta-like protein, [RH, Score=220, Expect=9e-75]} {Smed: dd_Smed_v6_9168_0_4, dd_Smed_v6_9168_0_4, [RH, Score=232, Expect=5e-80]} {RNA1509_4210} {RNA1310_21694} {RNA815_8937}
6. MligTC455_23147 1901 39.61 Mlig455_047162, Mlig455_048520

Neo: -

Age: -

 ATP9B 0.952 - - 0.952 - - -

Mlig455_047162 {REF} {Length: 4662} {Pfam: Phospholipid-translocating P-type ATPase C-terminal [PF16212.7, score=149.4]; haloacid dehalogenase-like hydrolase [PF00702.28, score=52.5]; E1-E2 ATPase [PF00122.22, score=41.5]; Phospholipid-translocating ATPase N-terminal [PF16209.7, score=41.0]; Cation transport ATPase (P-type) [PF13246.8, score=35.7]} {Human: ENSG00000166377, ATP9B, ATPase phospholipid transporting 9B (putative), [Score=1040, Expect=0.0]; ENSG00000054793, ATP9A, ATPase phospholipid transporting 9A (putative), [Score=1014, Expect=0.0]} {Mouse: ENSMUSG00000024566, Atp9b, ATPase, class II, type 9B, [Score=1026, Expect=0.0]; ENSMUSG00000027546, Atp9a, ATPase, class II, type 9A, [Score=1016, Expect=0.0]} {Dmel: FBgn0051729, CG31729, [Score=1011, Expect=0.0]} {Celegans: WBGene00009498, tat-5, Phospholipid-transporting ATPase, [Score=936, Expect=0.0]} {Smed: dd_Smed_v6_2913_0_2, dd_Smed_v6_2913_0_2, [Score=1076, Expect=0.0]} {RNA1509_16271, RNA1509_7231} {RNA1310_1570.2, RNA1509_16271, RNA1509_7231} {RNA1509_16271, RNA1509_7231, RNA815_134.1}

Mlig455_048520 {REF} {Length: 3804} {TRANSSPLICED} {Pfam: Phospholipid-translocating P-type ATPase C-terminal [PF16212.7, score=114.8]; haloacid dehalogenase-like hydrolase [PF00702.28, score=51.5]; E1-E2 ATPase [PF00122.22, score=39.2]; Cation transport ATPase (P-type) [PF13246.8, score=36.7]} {Human: ENSG00000166377, ATP9B, ATPase phospholipid transporting 9B (putative), [Score=946, Expect=0.0]; ENSG00000054793, ATP9A, ATPase phospholipid transporting 9A (putative), [Score=932, Expect=0.0]} {Mouse: ENSMUSG00000024566, Atp9b, ATPase, class II, type 9B, [Score=932, Expect=0.0]; ENSMUSG00000027546, Atp9a, ATPase, class II, type 9A, [Score=932, Expect=0.0]} {Dmel: FBgn0051729, CG31729, [Score=914, Expect=0.0]} {Celegans: WBGene00009498, tat-5, Phospholipid-transporting ATPase, [Score=843, Expect=0.0]} {Smed: dd_Smed_v6_2913_0_1, dd_Smed_v6_2913_0_1, [Score=983, Expect=0.0]} {RNA1509_16271} {RNA1310_1570.1} {RNA815_134.1}
7. MligTC455_32938 319 6.64 Mlig455_039489

Neo: -

Age: logFC(26M/2M)=-0.529

 0.95 - - - - 0.950 - Mlig455_039489 {REF} {Length: 1665} {RNA1509_14386} {RNA1310_21532} {RNA815_8850}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA