M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_53193

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_53193 617 12.85 Mlig455_030838

Neo: -

Age: Up-Up-Down, logFC(26M/2M)=0.595

 GCC2 Mlig455_030838 {REF} {Length: 4517} {TRANSSPLICED} {Pfam: GRIP domain [PF01465.22, score=56.1]; Rab binding domain [PF16704.7, score=29.2]; Coiled-coil region of CCDC155 or KASH [PF14662.8, score=19.4]} {Human: ENSG00000135968, GCC2, GRIP and coiled-coil domain containing 2, [RH, Score=130, Expect=1e-29]} {Mouse: ENSMUSG00000107275, Gcc2, GRIP and coiled-coil domain containing 2, [RH, Score=142, Expect=2e-33]; ENSMUSG00000038039, Gcc2, GRIP and coiled-coil domain containing 2, [RH, Score=142, Expect=2e-33]} {Dmel: FBgn0037979, GCC185, GRIP and coiled-coil domain containing 185 kDa, [RH, Score=72.4, Expect=2e-12]} {Celegans: WBGene00011503, gcc-2, GRIP and coiled-coil domain-containing protein 2, [RH, Score=67.8, Expect=3e-11]} {Smed: dd_Smed_v6_8507_0_1, dd_Smed_v6_8507_0_1, [Score=152, Expect=6e-37]} {RNA1509_36545, RNA1509_945} {RNA1310_743, RNA1509_36545} {RNA1509_36545, RNA815_520}

Cumulative graph for MligTC455_53193

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -1.731 4.032 0.15092 0.76585
RegionR2 0.508 4.032 0.35864 0.75335
RegionR3 0.27 4.032 0.54560 1.00000
RegionR4 -0.214 4.032 0.66822 0.96562
RegionR5 -0.322 4.032 0.44095 0.80182
RegionR6 0.376 4.032 0.39179 0.96591
RegionR7 0.794 4.032 0.12392 0.66326
RegionR8 0.32 4.032 0.64612 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 0.634 4.032 0.72397 1.00000
RegenerationR2 0.513 4.032 0.26116 0.70780
RegenerationR3 0.285 4.032 0.56754 0.89285
RegenerationR4 -0.242 4.032 0.63836 0.92672
RegenerationR5 0.258 4.032 0.59596 0.90853
RegenerationR6 0.282 4.032 0.56661 0.84924
RegenerationBL -0.666 4.032 0.26516 0.62365
RegenerationTP -0.423 4.032 0.50596 0.90408


Genes with expression patterns similar to MligTC455_53193

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_53193 617 12.85 Mlig455_030838

Neo: -

Age: Up-Up-Down, logFC(26M/2M)=0.595

 GCC2 6 1.000 1.000 1.000 1.000 1.000 1.000 Mlig455_030838 {REF} {Length: 4517} {TRANSSPLICED} {Pfam: GRIP domain [PF01465.22, score=56.1]; Rab binding domain [PF16704.7, score=29.2]; Coiled-coil region of CCDC155 or KASH [PF14662.8, score=19.4]} {Human: ENSG00000135968, GCC2, GRIP and coiled-coil domain containing 2, [RH, Score=130, Expect=1e-29]} {Mouse: ENSMUSG00000107275, Gcc2, GRIP and coiled-coil domain containing 2, [RH, Score=142, Expect=2e-33]; ENSMUSG00000038039, Gcc2, GRIP and coiled-coil domain containing 2, [RH, Score=142, Expect=2e-33]} {Dmel: FBgn0037979, GCC185, GRIP and coiled-coil domain containing 185 kDa, [RH, Score=72.4, Expect=2e-12]} {Celegans: WBGene00011503, gcc-2, GRIP and coiled-coil domain-containing protein 2, [RH, Score=67.8, Expect=3e-11]} {Smed: dd_Smed_v6_8507_0_1, dd_Smed_v6_8507_0_1, [Score=152, Expect=6e-37]} {RNA1509_36545, RNA1509_945} {RNA1310_743, RNA1509_36545} {RNA1509_36545, RNA815_520}
2. MligTC455_53192 698 14.55 Mlig455_026857

Neo: -

Age: -

 GCC2 5.54 0.891 0.927 0.961 0.933 0.958 0.870 Mlig455_026857 {REF} {Length: 4548} {TRANSSPLICED} {Pfam: GRIP domain [PF01465.22, score=56.1]; Rab binding domain [PF16704.7, score=29.2]} {Human: ENSG00000135968, GCC2, GRIP and coiled-coil domain containing 2, [RH, Score=129, Expect=1e-29]} {Mouse: ENSMUSG00000107275, Gcc2, GRIP and coiled-coil domain containing 2, [RH, Score=142, Expect=9e-34]; ENSMUSG00000038039, Gcc2, GRIP and coiled-coil domain containing 2, [RH, Score=142, Expect=9e-34]} {Dmel: FBgn0037979, GCC185, GRIP and coiled-coil domain containing 185 kDa, [RH, Score=72.0, Expect=3e-12]} {Celegans: WBGene00011503, gcc-2, GRIP and coiled-coil domain-containing protein 2, [RH, Score=67.8, Expect=4e-11]} {RNA1509_945} {RNA1310_743} {RNA815_520}
3. MligTC455_52668 1245 25.93 Mlig455_044639

Neo: -

Age: -

 MAPK14 0.969 - - 0.969 - - - Mlig455_044639 {REF} {Length: 4395} {Pfam: Protein kinase domain [PF00069.27, score=212.7]; Protein tyrosine and serine/threonine kinase [PF07714.19, score=85.2]; ABC1 atypical kinase-like domain [PF03109.18, score=24.3]; Phosphotransferase enzyme family [PF01636.25, score=20.5]; Lipopolysaccharide kinase (Kdo/WaaP) family [PF06293.16, score=18.5]} {Human: ENSG00000112062, MAPK14, mitogen-activated protein kinase 14, [Score=307, Expect=6e-102]; ENSG00000185386, MAPK11, mitogen-activated protein kinase 11, [Score=300, Expect=5e-99]} {Mouse: ENSMUSG00000053436, Mapk14, mitogen-activated protein kinase 14, [Score=308, Expect=2e-102]; ENSMUSG00000053137, Mapk11, mitogen-activated protein kinase 11, [Score=301, Expect=7e-100]} {Dmel: FBgn0015765, p38a, p38a MAP kinase, [Score=296, Expect=4e-98]} {Celegans: WBGene00004055, pmk-1, Mitogen-activated protein kinase pmk-1, [Score=294, Expect=5e-97]} {Smed: dd_Smed_v6_1282_0_1, dd_Smed_v6_1282_0_1, [Score=315, Expect=2e-105]} {RNA1509_51860, RNA1509_8677} {RNA1310_3622.1, RNA1509_51860, RNA1509_8677} {RNA1509_51860, RNA1509_8677, RNA815_8942}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA