M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_53378

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_53378 920 19.17 Mlig455_043221

Neo: -

Age: -

 GLO1 Mlig455_043221 {REF} {Length: 773} {Pfam: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily [PF00903.27, score=42.8]} {Human: ENSG00000124767, GLO1, glyoxalase I, [Score=130, Expect=7e-39]} {Mouse: ENSMUSG00000024026, Glo1, glyoxalase 1, [Score=130, Expect=5e-39]} {Dmel: FBgn0283450, Glo1, Glyoxalase 1, [Score=118, Expect=2e-34]} {RNA1509_15538} {RNA1310_31766} {RNA815_19966}

Cumulative graph for MligTC455_53378

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 1.828 4.55 0.29637 0.94739
RegionR2 -1.506 4.55 0.28202 0.66844
RegionR3 -0.091 4.55 0.93097 1.00000
RegionR4 2.216 4.55 0.06954 0.24106
RegionR5 0.469 4.55 0.65506 1.00000
RegionR6 -0.793 4.55 0.49676 1.00000
RegionR7 -1.469 4.55 0.25315 0.87956
RegionR8 -0.653 4.55 0.66413 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -1.688 4.55 0.49118 1.00000
RegenerationR2 0.492 4.55 0.71438 0.96152
RegenerationR3 -0.137 4.55 0.91722 1.00000
RegenerationR4 -0.377 4.55 0.78283 0.98191
RegenerationR5 -0.173 4.55 0.89558 1.00000
RegenerationR6 0.568 4.55 0.68246 0.91566
RegenerationBL 0.782 4.55 0.52859 0.88885
RegenerationTP 0.482 4.55 0.73210 1.00000


Genes with expression patterns similar to MligTC455_53378

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_53378 920 19.17 Mlig455_043221

Neo: -

Age: -

 GLO1 5 1.000 - 1.000 1.000 1.000 1.000 Mlig455_043221 {REF} {Length: 773} {Pfam: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily [PF00903.27, score=42.8]} {Human: ENSG00000124767, GLO1, glyoxalase I, [Score=130, Expect=7e-39]} {Mouse: ENSMUSG00000024026, Glo1, glyoxalase 1, [Score=130, Expect=5e-39]} {Dmel: FBgn0283450, Glo1, Glyoxalase 1, [Score=118, Expect=2e-34]} {RNA1509_15538} {RNA1310_31766} {RNA815_19966}
2. MligTC455_53377 1841 38.36 Mlig455_043207, Mlig455_043213

Neo: -

Age: logFC(26M/2M)=-0.322

 GLO1 4.807 0.999 - 0.934 0.987 0.966 0.921

Mlig455_043207 {REF} {Length: 906} {TRANSSPLICED} {Pfam: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily [PF00903.27, score=82.3]; Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily [PF13669.8, score=27.9]; Glyoxalase-like domain [PF18029.3, score=21.7]} {Human: ENSG00000124767, GLO1, glyoxalase I, [RH, Score=239, Expect=4e-81]} {Mouse: ENSMUSG00000024026, Glo1, glyoxalase 1, [RH, Score=246, Expect=4e-84]} {Dmel: FBgn0283450, Glo1, Glyoxalase 1, [RH, Score=227, Expect=9e-77]} {RNA1509_15538} {RNA1310_31766} {RNA815_19966}

Mlig455_043213 {REF} {Length: 903} {TRANSSPLICED} {Pfam: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily [PF00903.27, score=85.1]; Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily [PF13669.8, score=31.2]; Glyoxalase-like domain [PF18029.3, score=22.7]} {Human: ENSG00000124767, GLO1, glyoxalase I, [RH, Score=238, Expect=8e-81]} {Mouse: ENSMUSG00000024026, Glo1, glyoxalase 1, [RH, Score=244, Expect=2e-83]} {Dmel: FBgn0283450, Glo1, Glyoxalase 1, [RH, Score=226, Expect=2e-76]} {RNA1509_13618, RNA1509_15538, RNA1509_31901} {RNA1310_31766, RNA1509_13618, RNA1509_15538, RNA1509_31901} {RNA1509_13618, RNA1509_15538, RNA1509_31901, RNA815_19966}
3. MligTC455_10941 4253 88.6 Mlig455_039548

Neo: -

Age: -

Region-enriched R4: 1.423/0.00000

 ZNF706 1.798 - - - - 0.840 0.958 Mlig455_039548 {REF} {Length: 671} {TRANSSPLICED} {Pfam: 4F5 protein related disordered region [PF04419.16, score=42.0]} {Human: ENSG00000120963, ZNF706, zinc finger protein 706, [RH, Score=91.7, Expect=6e-26]} {Mouse: ENSMUSG00000062397, Zfp706, zinc finger protein 706, [RH, Score=91.7, Expect=4e-26]} {Dmel: FBgn0036538, CG15715, [RH, Score=102, Expect=2e-30]} {Celegans: WBGene00007223, C01F6.9, Nx, [RH, Score=84.0, Expect=3e-23]} {Smed: dd_Smed_v6_3802_0_1, dd_Smed_v6_3802_0_1, [RH, Score=115, Expect=1e-35]} {RNA1509_10903, RNA1509_23319, RNA1509_3988} {RNA1310_53782, RNA1509_10903, RNA1509_23319} {RNA1509_10903, RNA1509_23319, RNA815_27132}
4. MligTC455_25024 713 14.85 Mlig455_043194

Neo: -

Age: Up-Down-Up

 TSC2 0.968 - - - - - 0.968 Mlig455_043194 {REF} {Length: 5800} {Pfam: Domain of unknown function (DUF3384) [PF11864.10, score=59.5]; Rap/ran-GAP [PF02145.17, score=46.1]; Tuberin [PF03542.18, score=38.1]} {Human: ENSG00000103197, TSC2, TSC complex subunit 2, [Score=95.1, Expect=6e-19]} {Mouse: ENSMUSG00000002496, Tsc2, tuberous sclerosis 2, [Score=87.8, Expect=8e-17]} {Dmel: FBgn0005198, gig, gigas, [RH, Score=90.5, Expect=9e-18]} {Celegans: WBGene00018734, F53A10.2, Rap1GAP, [Score=59.7, Expect=1e-08]} {RNA1509_55366} {RNA1310_1230.2} {RNA815_7005}
5. MligTC455_34183 1314 27.37 Mlig455_049237

Neo: -

Age: logFC(26M/2M)=0.606

 POLR2E 0.963 - - - - - 0.963 Mlig455_049237 {REF} {Length: 3214} {TRANSSPLICED} {Pfam: RNA polymerase Rpb5, N-terminal domain [PF03871.16, score=102.8]; RNA polymerase Rpb5, C-terminal domain [PF01191.21, score=41.5]} {Human: ENSG00000099817, POLR2E, RNA polymerase II subunit E, [Score=231, Expect=8e-74]} {Mouse: ENSMUSG00000004667, Polr2e, polymerase (RNA) II (DNA directed) polypeptide E, [Score=236, Expect=5e-76]} {Dmel: FBgn0033571, Rpb5, [Score=241, Expect=2e-78]} {Celegans: WBGene00019246, rpb-5, DNA-directed RNA polymerases I, II, and III subunit RPABC1, [Score=219, Expect=6e-70]} {Smed: dd_Smed_v6_6572_0_1, dd_Smed_v6_6572_0_1, [Score=150, Expect=3e-43]} {RNA1509_11560} {RNA1310_13303} {RNA815_11849.1}
6. MligTC455_34182 1366 28.46 Mlig455_011091

Neo: -

Age: Up-Down-Up

 0.962 - - - - - 0.962 Mlig455_011091 {REF} {Length: 2742} {TRANSSPLICED} {RNA1509_11560, RNA1509_31926, RNA1509_49865} {RNA1310_13303, RNA1509_11560, RNA1509_31926, RNA1509_49865} {RNA1509_11560, RNA1509_31926, RNA1509_49865, RNA815_11849.1}
7. MligTC455_07733 433 9.02 Mlig455_010369

Neo: -

Age: -

 PRKCE 0.961 - - - - 0.961 - Mlig455_010369 {REF} {Length: 6223} {TRANSSPLICED} {Pfam: Protein kinase domain [PF00069.27, score=219.4]; Protein tyrosine and serine/threonine kinase [PF07714.19, score=128.3]; Phorbol esters/diacylglycerol binding domain (C1 domain) [PF00130.24, score=104.8]; Krr1 KH1 domain [PF17903.3, score=94.5]; C2 domain [PF00168.32, score=49.6]; Protein kinase C terminal domain [PF00433.26, score=36.3]; Kinase-like [PF14531.8, score=22.1]; ABC1 atypical kinase-like domain [PF03109.18, score=21.4]} {Human: ENSG00000171132, PRKCE, protein kinase C epsilon, [RH, Score=799, Expect=0.0]} {Mouse: ENSMUSG00000045038, Prkce, protein kinase C, epsilon, [RH, Score=798, Expect=0.0]} {Dmel: FBgn0003093, Pkc98E, Protein C kinase 98E, [RH, Score=781, Expect=0.0]} {Celegans: WBGene00004032, pkc-1, Protein kinase C-like 1B, [RH, Score=566, Expect=0.0]} {Smed: dd_Smed_v6_8010_0_1, dd_Smed_v6_8010_0_1, [Score=751, Expect=0.0]} {RNA1509_10559, RNA1509_50072} {RNA1310_6246, RNA1509_10559, RNA1509_50072} {RNA1509_10559, RNA1509_50072, RNA815_11360}
8. MligTC455_48953 1852 38.59 Mlig455_011173

Neo: -

Age: -

 MPDZ 0.961 - - - - - 0.961 Mlig455_011173 {REF} {Length: 1065} {TRANSSPLICED} {Pfam: PDZ domain [PF00595.26, score=81.8]; PDZ domain [PF17820.3, score=33.1]; PDZ domain [PF13180.8, score=31.8]} {Human: ENSG00000107186, MPDZ, multiple PDZ domain crumbs cell polarity complex component, [Score=78.6, Expect=1e-16]} {Mouse: ENSMUSG00000028402, Mpdz, multiple PDZ domain protein, [Score=82.8, Expect=3e-18]} {Dmel: FBgn0000008, a, arc, [Score=55.8, Expect=5e-09]} {Celegans: WBGene00011890, mics-1, MItoChondrial Scaffolding protei, [Score=46.6, Expect=3e-06]} {Smed: dd_Smed_v6_854_0_4, dd_Smed_v6_854_0_4, [Score=54.7, Expect=8e-09]} {RNA1509_22633} {RNA1310_4528.2, RNA1509_22633} {RNA1509_22633, RNA815_5539}
9. MligTC455_44161 1390 28.97 Mlig455_031098

Neo: -

Age: logFC(26M/2M)=0.542

 0.96 - - - - - 0.960 Mlig455_031098 {REF} {Length: 952} {TRANSSPLICED} {RNA1509_20509, RNA1509_8630} {RNA1310_25628.1, RNA1509_20509, RNA1509_8630} {RNA1509_20509, RNA1509_8630, RNA815_55179}
10. MligTC455_32744 1369 28.53 Mlig455_065420

Neo: -

Age: logFC(26M/2M)=0.351

 KY 0.954 - - - - - 0.954 Mlig455_065420 {REF} {Length: 6701} {TRANSSPLICED} {Pfam: Transglutaminase-like superfamily [PF01841.21, score=37.4]} {Human: ENSG00000174611, KY, kyphoscoliosis peptidase, [Score=144, Expect=9e-35]} {Mouse: ENSMUSG00000035606, Ky, kyphoscoliosis peptidase, [Score=149, Expect=2e-36]} {Dmel: FBgn0050147, Hil, Hillarin, [Score=279, Expect=1e-78]} {Celegans: WBGene00003089, ltd-1, Lim and Transglutaminase Domain; Lim and transglutaminase domain protein, [Score=242, Expect=3e-69]} {Smed: dd_Smed_v6_1846_0_1, dd_Smed_v6_1846_0_1, [RH, Score=568, Expect=0.0]} {RNA1509_1987} {RNA1310_669, RNA1509_1987} {RNA1509_1987, RNA815_5918.1}
11. MligTC455_44131 2238 46.63 Mlig455_008740, Mlig455_008756

Neo: -

Age: logFC(26M/2M)=0.231

 BPHL 0.954 - - - - - 0.954

Mlig455_008740 {REF} {Length: 1106} {TRANSSPLICED} {Pfam: alpha/beta hydrolase fold [PF00561.22, score=74.8]; Alpha/beta hydrolase family [PF12697.9, score=61.2]; Serine aminopeptidase, S33 [PF12146.10, score=55.0]; TAP-like protein [PF08386.12, score=23.7]} {Human: ENSG00000137274, BPHL, biphenyl hydrolase like, [RH, Score=233, Expect=5e-76]} {Mouse: ENSMUSG00000038286, Bphl, biphenyl hydrolase-like (serine hydrolase, breast epithelial mucin-associated antigen), [RH, Score=224, Expect=2e-72]} {Dmel: FBgn0038974, CG5377, [RH, Score=202, Expect=2e-64]} {Celegans: WBGene00019280, K01A2.5, [RH, Score=106, Expect=2e-27]} {RNA1509_36267} {RNA1310_32073} {RNA815_14961}

Mlig455_008756 {REF} {Length: 1106} {TRANSSPLICED} {Pfam: alpha/beta hydrolase fold [PF00561.22, score=74.8]; Alpha/beta hydrolase family [PF12697.9, score=61.2]; Serine aminopeptidase, S33 [PF12146.10, score=55.0]; TAP-like protein [PF08386.12, score=23.7]} {Human: ENSG00000137274, BPHL, biphenyl hydrolase like, [RH, Score=233, Expect=5e-76]} {Mouse: ENSMUSG00000038286, Bphl, biphenyl hydrolase-like (serine hydrolase, breast epithelial mucin-associated antigen), [RH, Score=224, Expect=2e-72]} {Dmel: FBgn0038974, CG5377, [RH, Score=202, Expect=2e-64]} {Celegans: WBGene00019280, K01A2.5, [RH, Score=106, Expect=2e-27]} {RNA1509_11876, RNA1509_17663, RNA1509_36267} {RNA1310_32073, RNA1509_11876, RNA1509_17663, RNA1509_36267} {RNA1509_11876, RNA1509_17663, RNA1509_36267, RNA815_14961}
12. MligTC455_31618 754 15.7 Mlig455_065867

Neo: -

Age: logFC(26M/2M)=0.770

Region-enriched R5: 1.552/0.03121

 USP5 0.95 - - - - 0.950 - Mlig455_065867 {REF} {Length: 3922} {TRANSSPLICED} {Pfam: Ubiquitin carboxyl-terminal hydrolase [PF00443.31, score=141.8]; Variant UBP zinc finger [PF17807.3, score=79.8]; UBA/TS-N domain [PF00627.33, score=72.9]; Zn-finger in ubiquitin-hydrolases and other protein [PF02148.21, score=55.1]; Ubiquitin carboxyl-terminal hydrolase [PF13423.8, score=37.6]} {Human: ENSG00000111667, USP5, ubiquitin specific peptidase 5, [RH, Score=750, Expect=0.0]} {Mouse: ENSMUSG00000038429, Usp5, ubiquitin specific peptidase 5 (isopeptidase T), [RH, Score=749, Expect=0.0]} {Dmel: FBgn0035402, Usp5, Ubiquitin specific protease 5, [RH, Score=685, Expect=0.0]} {Celegans: WBGene00020839, usp-5, Ubiquitinyl hydrolase 1, [RH, Score=417, Expect=6e-134]} {Smed: dd_Smed_v6_3655_0_1, dd_Smed_v6_3655_0_1, [RH, Score=323, Expect=2e-103]} {RNA1509_35102, RNA1509_3862, RNA1509_56074} {RNA1310_7195.1, RNA1509_35102, RNA1509_56074} {RNA1509_35102, RNA1509_56074, RNA815_2229}
13. MligTC455_46282 1935 40.32 Mlig455_010437

Neo: -

Age: -

 NIPSNAP2 0.95 - - - - - 0.950 Mlig455_010437 {REF} {Length: 2903} {Pfam: NIPSNAP [PF07978.15, score=131.0]} {Human: ENSG00000146729, NIPSNAP2, nipsnap homolog 2, [RH, Score=210, Expect=9e-67]; ENSG00000184117, NIPSNAP1, nipsnap homolog 1, [RH, Score=202, Expect=9e-64]} {Mouse: ENSMUSG00000029432, Nipsnap2, nipsnap homolog 2, [RH, Score=206, Expect=2e-65]; ENSMUSG00000034285, Nipsnap1, nipsnap homolog 1, [RH, Score=201, Expect=1e-63]} {Dmel: FBgn0030724, Nipsnap, [RH, Score=212, Expect=3e-68]} {Smed: dd_Smed_v6_2078_0_1, dd_Smed_v6_2078_0_1, [RH, Score=244, Expect=7e-81]} {RNA1509_43562} {RNA1310_34826} {RNA815_4580.1}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA