M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_53497

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_53497 1155 24.06 Mlig455_031012

Neo: -

Age: -

 GOT1 Mlig455_031012 {REF} {Length: 1966} {Pfam: Aminotransferase class I and II [PF00155.23, score=261.7]} {Human: ENSG00000120053, GOT1, glutamic-oxaloacetic transaminase 1, [RH, Score=467, Expect=7e-164]} {Mouse: ENSMUSG00000025190, Got1, glutamic-oxaloacetic transaminase 1, soluble, [RH, Score=455, Expect=2e-159]} {Dmel: FBgn0001124, Got1, Glutamate oxaloacetate transaminase 1, [RH, Score=433, Expect=3e-150]} {Celegans: WBGene00020146, got-1.2, Probable aspartate aminotransferase, cytoplasmic, [RH, Score=419, Expect=3e-145]} {Smed: dd_Smed_v6_2004_0_1, dd_Smed_v6_2004_0_1, [RH, Score=534, Expect=0.0]} {RNA1509_16017, RNA1509_19186, RNA1509_22671, RNA1509_5892} {RNA1310_14957, RNA1509_16017, RNA1509_19186, RNA1509_22671} {RNA1509_16017, RNA1509_19186, RNA1509_22671, RNA815_5929.1}

Cumulative graph for MligTC455_53497

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -0.264 4.917 0.83386 1.00000
RegionR2 0.92 4.917 0.30483 0.69553
RegionR3 0.78 4.917 0.28395 0.82692
RegionR4 0.368 4.917 0.67172 0.96803
RegionR5 -0.169 4.917 0.81651 1.00000
RegionR6 0.199 4.917 0.79223 1.00000
RegionR7 -0.535 4.917 0.50800 1.00000
RegionR8 -1.299 4.917 0.16922 0.74196

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -6.965 4.917 0.10849 0.83103
RegenerationR2 0.62 4.917 0.51048 0.87537
RegenerationR3 0.855 4.917 0.39149 0.79688
RegenerationR4 1.289 4.917 0.22471 0.67310
RegenerationR5 0.735 4.917 0.45656 0.83421
RegenerationR6 0.959 4.917 0.32746 0.67374
RegenerationBL 1.429 4.917 0.09257 0.35745
RegenerationTP 1.478 4.917 0.14199 0.56195


Genes with expression patterns similar to MligTC455_53497

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_53497 1155 24.06 Mlig455_031012

Neo: -

Age: -

 GOT1 6 1.000 1.000 1.000 1.000 1.000 1.000 Mlig455_031012 {REF} {Length: 1966} {Pfam: Aminotransferase class I and II [PF00155.23, score=261.7]} {Human: ENSG00000120053, GOT1, glutamic-oxaloacetic transaminase 1, [RH, Score=467, Expect=7e-164]} {Mouse: ENSMUSG00000025190, Got1, glutamic-oxaloacetic transaminase 1, soluble, [RH, Score=455, Expect=2e-159]} {Dmel: FBgn0001124, Got1, Glutamate oxaloacetate transaminase 1, [RH, Score=433, Expect=3e-150]} {Celegans: WBGene00020146, got-1.2, Probable aspartate aminotransferase, cytoplasmic, [RH, Score=419, Expect=3e-145]} {Smed: dd_Smed_v6_2004_0_1, dd_Smed_v6_2004_0_1, [RH, Score=534, Expect=0.0]} {RNA1509_16017, RNA1509_19186, RNA1509_22671, RNA1509_5892} {RNA1310_14957, RNA1509_16017, RNA1509_19186, RNA1509_22671} {RNA1509_16017, RNA1509_19186, RNA1509_22671, RNA815_5929.1}
2. MligTC455_28181 2757 57.43 Mlig455_000409, Mlig455_012145, Mlig455_013328, Mlig455_014557, Mlig455_015902, Mlig455_016263, Mlig455_021233, Mlig455_022624, Mlig455_026582, Mlig455_032618, Mlig455_033422, Mlig455_034429, Mlig455_038632, Mlig455_041747, Mlig455_048379, Mlig455_049793, Mlig455_051674, Mlig455_055837, Mlig455_062057, Mlig455_070241, Mlig455_070842, Mlig455_071022

Neo: -

Age: -

 0.982 - - 0.982 - - -

Mlig455_000409 {REF} {Length: 5142} {TRANSSPLICED} {RNA1509_1558} {RNA1310_6682} {RNA815_9192}

Mlig455_012145 {REF} {Length: 2739} {TRANSSPLICED} {RNA1509_1558} {RNA1310_452} {RNA815_9192}

Mlig455_013328 {REF} {Length: 2549} {TRANSSPLICED} {RNA1509_1558} {RNA1310_6682} {RNA815_9192}

Mlig455_014557 {REF} {Length: 2435} {TRANSSPLICED} {RNA1509_1558} {RNA1310_6682} {RNA815_9192}

Mlig455_015902 {REF} {Length: 2378} {TRANSSPLICED} {RNA1509_1558} {RNA1310_6682} {RNA815_9192}

Mlig455_016263 {REF} {Length: 5013} {TRANSSPLICED} {RNA1509_1558} {RNA1310_6682} {RNA815_9192}

Mlig455_021233 {REF} {Length: 331} {NoTransDecoderORF} {RNA1509_46811} {RNA1310_13121} {RNA815_34688}

Mlig455_022624 {REF} {Length: 955} {TRANSSPLICED} {RNA1509_37778} {RNA1310_6682} {RNA815_9192}

Mlig455_026582 {REF} {Length: 2288} {RNA1509_1558} {RNA1310_6682} {RNA815_9192}

Mlig455_032618 {REF} {Length: 1977} {TRANSSPLICED} {RNA1509_1558} {RNA1310_6682} {RNA815_9192}

Mlig455_033422 {REF} {Length: 3032} {TRANSSPLICED} {RNA1509_1558} {RNA1310_6682} {RNA815_9192}

Mlig455_034429 {REF} {Length: 1056} {RNA1509_37778} {RNA1310_416.1} {RNA815_9192}

Mlig455_038632 {REF} {Length: 2149} {TRANSSPLICED} {RNA1509_1558} {RNA1310_6682} {RNA815_9192}

Mlig455_041747 {REF} {Length: 1978} {TRANSSPLICED} {RNA1509_1558} {RNA1310_6682} {RNA815_9192}

Mlig455_048379 {REF} {Length: 2513} {TRANSSPLICED} {RNA1509_1558} {RNA1310_452} {RNA815_9192}

Mlig455_049793 {REF} {Length: 2535} {TRANSSPLICED} {RNA1509_20482} {RNA1310_424} {RNA815_9192}

Mlig455_051674 {REF} {Length: 2605} {TRANSSPLICED} {RNA1509_1558} {RNA1310_6682} {RNA815_9192}

Mlig455_055837 {REF} {Length: 2546} {TRANSSPLICED} {RNA1509_20482} {RNA1310_6682} {RNA815_9192}

Mlig455_062057 {REF} {Length: 2034} {TRANSSPLICED} {RNA1509_1558} {RNA1310_6682} {RNA815_9192}

Mlig455_070241 {REF} {Length: 195} {NoTransDecoderORF} {RNA1509_39894} {RNA1310_95537} {RNA815_40890}

Mlig455_070842 {REF} {Length: 318} {NoTransDecoderORF} {RNA1509_30941} {RNA1310_13121} {RNA815_27783}

Mlig455_071022 {REF} {Length: 2435} {TRANSSPLICED} {RNA1509_1558} {RNA1310_6682} {RNA815_9192}
3. MligTC455_40669 83 1.74 Mlig455_039404

Neo: -

Age: Up-Down-Up

 ZC3H10 0.96 - - 0.960 - - - Mlig455_039404 {REF} {Length: 2203} {Pfam: Zinc finger C-x8-C-x5-C-x3-H type (and similar) [PF00642.26, score=31.9]; CCCH-type zinc finger [PF18044.3, score=28.9]; Torus domain [PF16131.7, score=27.9]; Zinc finger domain [PF18345.3, score=26.8]; Zinc-finger containing family [PF15663.7, score=21.7]} {Human: ENSG00000135482, ZC3H10, zinc finger CCCH-type containing 10, [RH, Score=141, Expect=3e-36]} {Mouse: ENSMUSG00000039810, Zc3h10, zinc finger CCCH type containing 10, [RH, Score=140, Expect=2e-36]} {Celegans: WBGene00021816, Y53G8AR.9, [RH, Score=87.0, Expect=1e-18]} {Smed: dd_Smed_v6_7175_0_2, dd_Smed_v6_7175_0_2, [RH, Score=113, Expect=3e-26]} {RNA1310_58263} {RNA815_31247}
4. MligTC455_50948 129 2.7 Mlig455_018698

Neo: -

Age: Down-Down-Up, logFC(26M/2M)=-0.989

 0.958 - - - - - 0.958 Mlig455_018698 {REF} {Length: 1189} {RNA1509_43023} {RNA1310_34717} {RNA815_16155}
5. MligTC455_42924 189 3.94 Mlig455_013919

Neo: -

Age: -

Region-enriched R4: 2.463/0.04490

 IFT140 0.957 - - 0.957 - - - Mlig455_013919 {REF} {Length: 5771} {Pfam: Region in Clathrin and VPS [PF00637.22, score=30.4]; Anaphase-promoting complex subunit 4 WD40 domain [PF12894.9, score=29.6]; WD domain, G-beta repeat [PF00400.34, score=27.3]; Tetratricopeptide repeat [PF13176.8, score=24.3]; Coatomer WD associated region [PF04053.16, score=22.4]; Tetratricopeptide repeat [PF13428.8, score=22.1]; Anaphase-promoting complex, cyclosome, subunit 3 [PF12895.9, score=18.8]; PPR repeat family [PF13041.8, score=18.8]} {Human: ENSG00000187535, IFT140, intraflagellar transport 140, [RH, Score=1102, Expect=0.0]} {Mouse: ENSMUSG00000024169, Ift140, intraflagellar transport 140, [RH, Score=1125, Expect=0.0]} {Dmel: FBgn0260933, rempA, reduced mechanoreceptor potential A, [RH, Score=685, Expect=0.0]} {Celegans: WBGene00000490, che-11, [RH, Score=714, Expect=0.0]} {Smed: dd_Smed_v6_11300_0_1, dd_Smed_v6_11300_0_1, [RH, Score=771, Expect=0.0]} {RNA1509_4178} {RNA1310_1450.1, RNA1509_4178} {RNA1509_4178, RNA815_1042}
6. MligTC455_35769 90 1.87 Mlig455_034140, Mlig455_050376, Mlig455_062180

Neo: -

Age: Down-Down-Up, logFC(26M/2M)=-1.028

 0.952 - - 0.952 - - -

Mlig455_034140 {REF} {Length: 1714} {RNA1509_25690} {RNA1310_57234} {RNA815_17883}

Mlig455_050376 {REF} {Length: 2093} {TRANSSPLICED} {RNA1509_54944} {RNA1310_23258} {RNA815_47172}

Mlig455_062180 {REF} {Length: 90} {NoTransDecoderORF} {RNA1509_25690} {RNA1310_65891} {RNA815_17883}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA