TomoSeq data search

Data search

Results for MligTC455_53548

Cluster

Total UMI counts

Global CPM

Transcripts

Categories

Human homolog

Annotation

MligTC455_53548

4177

87.02

Mlig455_065039

Neo: Int S/G2/M

Age: Down-Up-Up, logFC(26M/2M)=0.198

Mlig455_065039 {REF} {Length: 1502} {TRANSSPLICED} {Pfam: Ribosomal protein L1p/L10e family [PF00687.23, score=70.9]} {Mouse: ENSMUSG00000005846, Rsl1d1, ribosomal L1 domain containing 1, [RH, Score=85.9, Expect=8e-18]} {Dmel: FBgn0032050, CG13096, [RH, Score=62.0, Expect=5e-10]} {RNA1509_11093, RNA1509_4001, RNA1509_44012} {RNA1310_21589.1, RNA1509_11093, RNA1509_4001, RNA1509_44012} {RNA1509_11093, RNA1509_4001, RNA1509_44012, RNA815_8768}

Cumulative graph for MligTC455_53548

Region-enriched expression

Region	logFC	logCPM	Pvalue	FDR	Specificity
RegionR1	-1.668	6.598	0.00583	0.23620
RegionR2	0.003	6.598	0.99325	1.00000
RegionR3	0.522	6.598	0.07572	0.48772
RegionR4	-0.118	6.598	0.72275	1.00000
RegionR5	0.73	6.598	0.00713	0.04518
RegionR6	0.554	6.598	0.05516	0.44101
RegionR7	-0.015	6.598	0.96415	1.00000
RegionR8	-0.008	6.598	0.98386	1.00000

Regeneration-enriched expression

Region	logFC	logCPM	PValue	FDR	Specificity
RegenerationR1	0.465	6.598	0.56694	1.00000
RegenerationR2	-0.376	6.598	0.29977	0.74156
RegenerationR3	0.005	6.598	0.98982	1.00000
RegenerationR4	0.373	6.598	0.32128	0.75975
RegenerationR5	0.252	6.598	0.47599	0.84473
RegenerationR6	-0.185	6.598	0.61729	0.87916
RegenerationBL	-0.298	6.598	0.40775	0.77693
RegenerationTP	0.383	6.598	0.30223	0.74788

Genes with expression patterns similar to MligTC455_53548

Nr.	Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Σ Spearman correlations	Int1	Int2	Int3	Reg1	Reg2	Reg3	Annotation
1.	MligTC455_53548	4177	87.02	Mlig455_065039	Neo: Int S/G2/M Age: Down-Up-Up, logFC(26M/2M)=0.198		6	1.000	1.000	1.000	1.000	1.000	1.000	Mlig455_065039 {REF} {Length: 1502} {TRANSSPLICED} {Pfam: Ribosomal protein L1p/L10e family [PF00687.23, score=70.9]} {Mouse: ENSMUSG00000005846, Rsl1d1, ribosomal L1 domain containing 1, [RH, Score=85.9, Expect=8e-18]} {Dmel: FBgn0032050, CG13096, [RH, Score=62.0, Expect=5e-10]} {RNA1509_11093, RNA1509_4001, RNA1509_44012} {RNA1310_21589.1, RNA1509_11093, RNA1509_4001, RNA1509_44012} {RNA1509_11093, RNA1509_4001, RNA1509_44012, RNA815_8768}
2.	MligTC455_27006	2221	46.26	Mlig455_033694, Mlig455_050136	Neo: Int S/G2/M Age: Down-Up-Up, logFC(26M/2M)=0.312 Region-enriched R5: 1.026/0.01077		1.894	-	-	-	0.942	0.952	-	Mlig455_033694 {REF} {Length: 935} {TRANSSPLICED} {RNA1509_11770, RNA1509_47889} {RNA1310_35449.1, RNA1509_47889} {RNA1509_47889, RNA815_19150} Mlig455_050136 {REF} {Length: 935} {TRANSSPLICED} {RNA1509_11770, RNA1509_25611} {RNA1310_35449.1, RNA1509_11770, RNA1509_25611} {RNA1509_11770, RNA1509_25611, RNA815_19150}
3.	MligTC455_29613	826	17.22	Mlig455_033625	Neo: - Age: - Region-enriched R5: 2.140/0.00044 Region-enriched R7: 2.113/0.01992		1.736	-	-	-	0.960	0.776	-	Mlig455_033625 {REF} {Length: 4011} {RNA1509_22454} {RNA1310_30189} {RNA815_2013}
4.	MligTC455_51466	1978	41.22	Mlig455_036524	Neo: - Age: -	TRAM1	1.669	-	-	-	-	0.952	0.717	Mlig455_036524 {REF} {Length: 2909} {Pfam: TLC domain [PF03798.18, score=73.6]; TRAM1-like protein [PF08390.13, score=68.0]} {Human: ENSG00000067167, TRAM1, translocation associated membrane protein 1, [RH, Score=306, Expect=1e-101]} {Mouse: ENSMUSG00000025935, Tram1, translocating chain-associating membrane protein 1, [RH, Score=311, Expect=1e-103]} {Dmel: FBgn0040340, TRAM, [RH, Score=229, Expect=5e-72]} {Celegans: WBGene00007696, tram-1, Translocating chain-associated membrane protein, [RH, Score=219, Expect=3e-68]} {Smed: dd_Smed_v6_1740_0_1, dd_Smed_v6_1740_0_1, [RH, Score=402, Expect=8e-140]} {RNA1509_2218} {RNA1310_8399, RNA1509_2218} {RNA1509_2218, RNA815_5690}
5.	MligTC455_48887	342	7.12	Mlig455_068740	Neo: - Age: - Region-enriched R5: 2.022/0.00015		1.668	0.718	-	-	-	0.950	-	Mlig455_068740 {REF} {Length: 2197} {TRANSSPLICED} {Pfam: Oxidoreductase family, NAD-binding Rossmann fold [PF01408.24, score=51.4]; Oxidoreductase family, C-terminal alpha/beta domain [PF02894.19, score=29.7]} {RNA1509_15686} {RNA1310_3343.1} {RNA815_561.1}
6.	MligTC455_17251	399	8.32	Mlig455_044564	Neo: Irradiation Age: Down-Up-Down Region-enriched R5: 2.447/0.00470	GNAI1	1.665	0.715	-	-	-	0.950	-	Mlig455_044564 {REF} {Length: 2782} {TRANSSPLICED} {Pfam: G-protein alpha subunit [PF00503.22, score=411.7]; ADP-ribosylation factor family [PF00025.23, score=60.8]; Gtr1/RagA G protein conserved region [PF04670.14, score=22.2]} {Human: ENSG00000127955, GNAI1, G protein subunit alpha i1, [RH, Score=545, Expect=0.0]; ENSG00000114353, GNAI2, G protein subunit alpha i2, [RH, Score=539, Expect=0.0]; ENSG00000065135, GNAI3, G protein subunit alpha i3, [RH, Score=536, Expect=0.0]} {Mouse: ENSMUSG00000057614, Gnai1, guanine nucleotide binding protein (G protein), alpha inhibiting 1, [RH, Score=545, Expect=0.0]; ENSMUSG00000000001, Gnai3, guanine nucleotide binding protein (G protein), alpha inhibiting 3, [RH, Score=536, Expect=0.0]; ENSMUSG00000032562, Gnai2, guanine nucleotide binding protein (G protein), alpha inhibiting 2, [RH, Score=536, Expect=0.0]} {Dmel: FBgn0001104, Galphai, G protein alpha i subunit, [RH, Score=513, Expect=0.0]} {Celegans: WBGene00001678, gpa-16, Guanine nucleotide-binding protein alpha-16 subunit, [RH, Score=460, Expect=5e-163]} {Smed: dd_Smed_v6_5082_0_2, dd_Smed_v6_5082_0_2, [RH, Score=440, Expect=2e-155]} {RNA1509_5180} {RNA1310_16162} {RNA815_5988}
7.	MligTC455_44801	2919	60.82	Mlig455_043257, Mlig455_043282	Neo: Int S/G2/M Age: Up-Down-Up	SRP68	0.958	-	-	-	-	0.958	-	Mlig455_043257 {REF} {Length: 3204} {Pfam: RNA-binding signal recognition particle 68 [PF16969.7, score=314.5]} {Human: ENSG00000167881, SRP68, signal recognition particle 68, [RH, Score=332, Expect=1e-105]} {Mouse: ENSMUSG00000020780, Srp68, signal recognition particle 68, [RH, Score=333, Expect=2e-106]} {Dmel: FBgn0035947, Srp68, Signal recognition particle protein 68, [RH, Score=312, Expect=7e-99]} {Celegans: WBGene00010097, srpa-68, Probable signal recognition particle subunit SRP68, [RH, Score=226, Expect=3e-66]} {Smed: dd_Smed_v6_2240_0_2, dd_Smed_v6_2240_0_2, [RH, Score=282, Expect=3e-87]} {RNA1509_35353} {RNA1310_14683.1} {RNA815_4548} Mlig455_043282 {REF} {Length: 2900} {Pfam: RNA-binding signal recognition particle 68 [PF16969.7, score=315.1]} {Human: ENSG00000167881, SRP68, signal recognition particle 68, [RH, Score=332, Expect=7e-106]} {Mouse: ENSMUSG00000020780, Srp68, signal recognition particle 68, [RH, Score=333, Expect=1e-106]} {Dmel: FBgn0035947, Srp68, Signal recognition particle protein 68, [RH, Score=312, Expect=7e-99]} {Celegans: WBGene00010097, srpa-68, Probable signal recognition particle subunit SRP68, [RH, Score=226, Expect=3e-66]} {Smed: dd_Smed_v6_2240_0_2, dd_Smed_v6_2240_0_2, [RH, Score=281, Expect=6e-87]} {RNA1509_35353} {RNA1310_14683.1} {RNA815_4548}
8.	MligTC455_14807	138	2.87	Mlig455_003714	Neo: Int S/G2/M Age: - Region-enriched R5: 2.810/0.00011		0.955	-	-	-	-	0.955	-	Mlig455_003714 {REF} {Length: 2409} {TRANSSPLICED} {RNA1509_16227} {RNA1310_7722, RNA1509_16227} {RNA1509_16227, RNA815_3265}
9.	MligTC455_53271	514	10.71	Mlig455_069029	Neo: - Age: Down-Up-Up	SF3B4	0.953	-	-	-	-	0.953	-	Mlig455_069029 {REF} {Length: 1520} {TRANSSPLICED} {Pfam: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) [PF00076.24, score=134.0]; RNA recognition motif [PF16367.7, score=32.2]; RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) [PF13893.8, score=21.3]} {Human: ENSG00000143368, SF3B4, splicing factor 3b subunit 4, [RH, Score=400, Expect=3e-138]} {Mouse: ENSMUSG00000068856, Sf3b4, splicing factor 3b, subunit 4, [RH, Score=401, Expect=2e-138]} {Dmel: FBgn0015818, Spx, Spliceosomal protein on the X, [RH, Score=387, Expect=4e-134]} {Celegans: WBGene00004723, sap-49, Splicing factor 3B subunit 4, [RH, Score=371, Expect=1e-127]} {Smed: dd_Smed_v6_3556_0_1, dd_Smed_v6_3556_0_1, [RH, Score=402, Expect=6e-141]} {RNA1509_11168} {RNA1310_45243, RNA1509_11168} {RNA1509_11168, RNA815_14059.2}

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