Data search
Results for MligTC455_53934
| Cluster | Total UMI counts | Global CPM | Transcripts | Categories | Human homolog | Annotation |
|---|---|---|---|---|---|---|
| MligTC455_53934 | 371 | 7.72 | Mlig455_015711 | Neo: Int S/G2/M Age: - |
Mlig455_015711 {REF} {Length: 3442} {TRANSSPLICED} {RNA1509_14755, RNA1509_16948, RNA1509_34651} {RNA1310_16842, RNA1509_14755, RNA1509_16948, RNA1509_34651} {RNA1509_14755, RNA1509_16948, RNA1509_34651, RNA815_29654} |
Cumulative graph for MligTC455_53934
Region-enriched expression
| Region | logFC | logCPM | Pvalue | FDR | Specificity |
|---|---|---|---|---|---|
| RegionR1 | 0.343 | 3.476 | 0.77878 | 1.00000 | |
| RegionR2 | 0.582 | 3.476 | 0.38633 | 0.78081 | |
| RegionR3 | -0.383 | 3.476 | 0.42623 | 0.94766 | |
| RegionR4 | -0.69 | 3.476 | 0.30409 | 0.61727 | |
| RegionR5 | 0.246 | 3.476 | 0.56070 | 0.92029 | |
| RegionR6 | -0.531 | 3.476 | 0.29436 | 0.88583 | |
| RegionR7 | 0.754 | 3.476 | 0.21238 | 0.82787 | |
| RegionR8 | -0.321 | 3.476 | 0.71100 | 1.00000 |
Regeneration-enriched expression
| Region | logFC | logCPM | PValue | FDR | Specificity |
|---|---|---|---|---|---|
| RegenerationR1 | -5.09 | 3.476 | 0.34242 | 1.00000 | |
| RegenerationR2 | 0.134 | 3.476 | 0.81095 | 0.99328 | |
| RegenerationR3 | 0.697 | 3.476 | 0.26541 | 0.70030 | |
| RegenerationR4 | -0.021 | 3.476 | 0.97864 | 1.00000 | |
| RegenerationR5 | 0.6 | 3.476 | 0.25143 | 0.68488 | |
| RegenerationR6 | 1.56 | 3.476 | 0.01107 | 0.12985 | |
| RegenerationBL | -0.834 | 3.476 | 0.43606 | 0.80411 | |
| RegenerationTP | 0.013 | 3.476 | 0.98743 | 1.00000 |
Genes with expression patterns similar to MligTC455_53934
| Nr. | Cluster | Total UMI counts | Global CPM | Transcripts | Categories | Human homolog | Σ Spearman correlations | Int1 | Int2 | Int3 | Reg1 | Reg2 | Reg3 | Annotation |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1. | MligTC455_53934 | 371 | 7.72 | Mlig455_015711 | Neo: Int S/G2/M Age: - |
6 | 1.000 | 1.000 | 1.000 | 1.000 | 1.000 | 1.000 | Mlig455_015711 {REF} {Length: 3442} {TRANSSPLICED} {RNA1509_14755, RNA1509_16948, RNA1509_34651} {RNA1310_16842, RNA1509_14755, RNA1509_16948, RNA1509_34651} {RNA1509_14755, RNA1509_16948, RNA1509_34651, RNA815_29654} | |
| 2. | MligTC455_50640 | 710 | 14.79 | Mlig455_070140 | Neo: Neoblast, stringent Age: - Regeneration-enriched R6: 2.423 |
SSRP1 | 2.454 | - | 0.961 | 0.772 | - | 0.721 | - | Mlig455_070140 {REF} {Length: 5104} {TRANSSPLICED} {Pfam: POB3-like N-terminal PH domain [PF17292.4, score=81.9]; Histone chaperone Rttp106-like [PF08512.14, score=81.6]; Structure-specific recognition protein (SSRP1) [PF03531.16, score=79.0]; HMG (high mobility group) box [PF00505.21, score=75.4]; HMG-box domain [PF09011.12, score=54.7]; YABBY protein [PF04690.15, score=19.7]} {Human: ENSG00000149136, SSRP1, structure specific recognition protein 1, [RH, Score=549, Expect=0.0]} {Mouse: ENSMUSG00000027067, Ssrp1, structure specific recognition protein 1, [RH, Score=560, Expect=0.0]} {Dmel: FBgn0010278, Ssrp, Structure specific recognition protein, [RH, Score=439, Expect=2e-143]} {Celegans: WBGene00001973, hmg-3, FACT complex subunit ssrp1-B, [RH, Score=374, Expect=1e-118]} {Smed: dd_Smed_v6_3904_0_1, dd_Smed_v6_3904_0_1, [RH, Score=301, Expect=2e-93]} {RNA1509_3392, RNA1509_52219} {RNA1310_9322, RNA1509_52219} {RNA1509_52219, RNA815_4568} |
| 3. | MligTC455_25271 | 185 | 3.86 | Mlig455_035679 | Neo: - Age: - |
XPO7 | 1.894 | - | - | - | - | 0.975 | 0.919 | Mlig455_035679 {REF} {Length: 5380} {TRANSSPLICED} {Pfam: Importin-beta N-terminal domain [PF03810.21, score=22.2]} {Human: ENSG00000130227, XPO7, exportin 7, [RH, Score=1230, Expect=0.0]} {Mouse: ENSMUSG00000022100, Xpo7, exportin 7, [RH, Score=1227, Expect=0.0]} {Dmel: FBgn0053180, Ranbp16, [RH, Score=1072, Expect=0.0]} {Celegans: WBGene00007952, C35A5.8, [RH, Score=781, Expect=0.0]} {Smed: dd_Smed_v6_5566_0_1, dd_Smed_v6_5566_0_1, [RH, Score=728, Expect=0.0]} {RNA1509_43046, RNA1509_6691} {RNA1310_1345.1, RNA1509_43046, RNA1509_6691} {RNA1509_43046, RNA1509_6691, RNA815_775.1} |
| 4. | MligTC455_45965 | 1196 | 24.91 | Mlig455_009338, Mlig455_036999 | Neo: Neoblast Age: - |
RBL2 | 1.749 | - | 0.787 | - | - | 0.962 | - | Mlig455_009338 {REF} {Length: 4546} {Pfam: Retinoblastoma-associated protein A domain [PF01858.19, score=117.4]; Domain of unknown function (DUF3452) [PF11934.10, score=94.1]; Retinoblastoma-associated protein B domain [PF01857.22, score=56.4]} {Human: ENSG00000103479, RBL2, RB transcriptional corepressor like 2, [RH, Score=248, Expect=2e-68]; ENSG00000080839, RBL1, RB transcriptional corepressor like 1, [RH, Score=244, Expect=2e-67]} {Mouse: ENSMUSG00000031666, Rbl2, RB transcriptional corepressor like 2, [RH, Score=251, Expect=1e-69]; ENSMUSG00000027641, Rbl1, RB transcriptional corepressor like 1, [RH, Score=243, Expect=6e-67]} {Dmel: FBgn0015799, Rbf, Retinoblastoma-family protein, [RH, Score=189, Expect=1e-49]} {Smed: dd_Smed_v6_6879_0_1, dd_Smed_v6_6879_0_1, [RH, Score=243, Expect=1e-67]} {RNA1509_11832, RNA1509_27711} {RNA1310_5723, RNA1509_11832, RNA1509_27711} {RNA1509_11832, RNA1509_27711, RNA815_1990.1} Mlig455_036999 {REF} {Length: 5355} {Pfam: Retinoblastoma-associated protein A domain [PF01858.19, score=118.2]; Domain of unknown function (DUF3452) [PF11934.10, score=93.7]; Retinoblastoma-associated protein B domain [PF01857.22, score=56.4]} {Human: ENSG00000103479, RBL2, RB transcriptional corepressor like 2, [RH, Score=247, Expect=7e-68]; ENSG00000080839, RBL1, RB transcriptional corepressor like 1, [RH, Score=246, Expect=4e-68]} {Mouse: ENSMUSG00000031666, Rbl2, RB transcriptional corepressor like 2, [RH, Score=251, Expect=2e-69]; ENSMUSG00000027641, Rbl1, RB transcriptional corepressor like 1, [RH, Score=244, Expect=2e-67]} {Dmel: FBgn0015799, Rbf, Retinoblastoma-family protein, [RH, Score=188, Expect=3e-49]} {Smed: dd_Smed_v6_6879_0_1, dd_Smed_v6_6879_0_1, [RH, Score=243, Expect=2e-67]} {RNA1509_11832} {RNA1310_5723} {RNA815_1990.1} |
| 5. | MligTC455_47144 | 714 | 14.88 | Mlig455_059324 | Neo: Int S/G2/M Age: logFC(26M/2M)=1.273 |
1.72 | - | 0.952 | - | - | 0.768 | - | Mlig455_059324 {REF} {Length: 1267} {TRANSSPLICED} {Pfam: Surfeit locus protein 6 [PF04935.14, score=47.9]} {Smed: dd_Smed_v6_6349_0_1, dd_Smed_v6_6349_0_1, [Score=45.4, Expect=7e-06]} {RNA1509_5392} {RNA1310_27174} {RNA815_11862} | |
| 6. | MligTC455_32181 | 167 | 3.47 | Mlig455_024277 | Neo: Irradiation Age: logFC(26M/2M)=0.310 |
GTF2H2C_2 | 0.988 | - | - | - | - | 0.988 | - | Mlig455_024277 {REF} {Length: 1797} {TRANSSPLICED} {Pfam: Ssl1-like [PF04056.16, score=211.4]; von Willebrand factor type A domain [PF13519.8, score=35.9]; TFIIH C1-like domain [PF07975.14, score=33.0]} {Human: ENSG00000274675, GTF2H2C_2, GTF2H2 family member C, copy 2, [RH, Score=305, Expect=5e-100]; ENSG00000183474, GTF2H2C, GTF2H2 family member C, [RH, Score=305, Expect=5e-100]; ENSG00000276910, GTF2H2, general transcription factor IIH subunit 2, [RH, Score=301, Expect=1e-98]; ENSG00000275045, GTF2H2, general transcription factor IIH subunit 2, [RH, Score=301, Expect=1e-98]; ENSG00000145736, GTF2H2, general transcription factor IIH subunit 2, [RH, Score=301, Expect=1e-98]} {Mouse: ENSMUSG00000021639, Gtf2h2, general transcription factor II H, polypeptide 2, [RH, Score=306, Expect=9e-101]} {Dmel: FBgn0037202, Ssl1, Suppressor of stem-loop mutation, [RH, Score=328, Expect=8e-109]} {Celegans: WBGene00011814, T16H12.4, General transcription factor IIH subunit 2, [RH, Score=251, Expect=1e-79]} {Smed: dd_Smed_v6_7018_0_1, dd_Smed_v6_7018_0_1, [RH, Score=278, Expect=5e-90]} {RNA1509_19373} {RNA1310_19775, RNA1509_19373} {RNA1509_19373, RNA815_8031} |
| 7. | MligTC455_19255 | 867 | 18.07 | Mlig455_010980 | Neo: - Age: - Region-enriched R4: 1.104/0.02462 |
ALG5 | 0.953 | - | 0.953 | - | - | - | - | Mlig455_010980 {REF} {Length: 3842} {TRANSSPLICED} {Pfam: Glycosyl transferase family 2 [PF00535.28, score=76.5]; Glycosyltransferase like family 2 [PF13641.8, score=44.8]} {Human: ENSG00000120697, ALG5, ALG5, dolichyl-phosphate beta-glucosyltransferase, [RH, Score=348, Expect=1e-119]} {Mouse: ENSMUSG00000036632, Alg5, asparagine-linked glycosylation 5 (dolichyl-phosphate beta-glucosyltransferase), [RH, Score=341, Expect=7e-117]} {Dmel: FBgn0261020, wol, wollknaeuel, [RH, Score=345, Expect=1e-118]} {Celegans: WBGene00019276, H43I07.3, [RH, Score=257, Expect=5e-84]} {Smed: dd_Smed_v6_6846_0_1, dd_Smed_v6_6846_0_1, [RH, Score=377, Expect=3e-131]} {RNA1509_14049, RNA1509_20200, RNA1509_25286, RNA1509_31726, RNA1509_39100, RNA1509_47377, RNA1509_55689} {RNA1310_25497, RNA1509_14049, RNA1509_20200, RNA1509_25286, RNA1509_31726, RNA1509_39100, RNA1509_47377, RNA1509_55689} {RNA1509_14049, RNA1509_20200, RNA1509_25286, RNA1509_31726, RNA1509_39100, RNA1509_47377, RNA1509_55689, RNA815_832.1} |
| 8. | MligTC455_36117 | 406 | 8.45 | Mlig455_032713 | Neo: Neoblast, stringent Age: - |
POLA1 | 0.952 | - | - | - | - | 0.952 | - | Mlig455_032713 {REF} {Length: 5929} {TRANSSPLICED} {Pfam: DNA polymerase family B [PF00136.23, score=355.1]; DNA Polymerase alpha zinc finger [PF08996.12, score=85.3]; DNA polymerase family B, exonuclease domain [PF03104.21, score=71.1]} {Human: ENSG00000101868, POLA1, DNA polymerase alpha 1, catalytic subunit, [RH, Score=760, Expect=0.0]} {Mouse: ENSMUSG00000006678, Pola1, polymerase (DNA directed), alpha 1, [RH, Score=745, Expect=0.0]} {Dmel: FBgn0259113, DNApol-alpha180, DNA polymerase alpha 180kD, [RH, Score=655, Expect=0.0]} {Celegans: WBGene00012936, pola-1, DNA polymerase, [RH, Score=575, Expect=7e-179]} {Smed: dd_Smed_v6_9168_0_1, dd_Smed_v6_9168_0_1, [RH, Score=618, Expect=0.0]} {RNA1509_10689, RNA1509_5465} {RNA1310_1287, RNA1509_10689, RNA1509_5465} {RNA1509_10689, RNA1509_5465, RNA815_2020} |
| 9. | MligTC455_32802 | 82 | 1.71 | Mlig455_058732 | Neo: Int S/G2/M Age: - |
CLEC16A | 0.951 | - | - | - | - | 0.951 | - | Mlig455_058732 {REF} {Length: 5696} {TRANSSPLICED} {Pfam: CLEC16A C-terminal [PF19439.1, score=338.2]; Uncharacterised conserved protein [PF09758.11, score=191.5]} {Human: ENSG00000038532, CLEC16A, C-type lectin domain containing 16A, [RH, Score=746, Expect=0.0]} {Mouse: ENSMUSG00000068663, Clec16a, C-type lectin domain family 16, member A, [RH, Score=741, Expect=0.0]} {Dmel: FBgn0038427, ema, endosomal maturation defective, [RH, Score=692, Expect=0.0]} {Celegans: WBGene00001660, gop-1, Protein CLEC16A homolog, [RH, Score=310, Expect=4e-89]} {Smed: dd_Smed_v6_3621_0_1, dd_Smed_v6_3621_0_1, [RH, Score=652, Expect=0.0]} {RNA1509_19027} {RNA1310_5561.1} {RNA815_6181} |
Berezikov Lab - 2020-2021 © ERIBA