TomoSeq data search

Data search

Results for MligTC455_53969

Cluster

Total UMI counts

Global CPM

Transcripts

Categories

Human homolog

Annotation

MligTC455_53969

547

11.39

Mlig455_000819

Neo: -

Age: -

PTPN4

Mlig455_000819 {REF} {Length: 3852} {Pfam: Protein-tyrosine phosphatase [PF00102.29, score=225.9]; PDZ domain [PF00595.26, score=61.8]; Tyrosine phosphatase family [PF13350.8, score=21.0]} {Human: ENSG00000088179, PTPN4, protein tyrosine phosphatase, non-receptor type 4, [Score=453, Expect=1e-149]} {Mouse: ENSMUSG00000026384, Ptpn4, protein tyrosine phosphatase, non-receptor type 4, [Score=462, Expect=2e-153]} {Dmel: FBgn0261985, Ptpmeg, Protein tyrosine phosphatase Meg, [Score=196, Expect=5e-54]} {Celegans: WBGene00004213, ptp-1, Tyrosine-protein phosphatase 1, [Score=407, Expect=2e-136]} {Smed: dd_Smed_v6_9236_0_1, dd_Smed_v6_9236_0_1, [RH, Score=360, Expect=1e-113]} {RNA1509_39440} {RNA1310_4025} {RNA815_2821.1}

Cumulative graph for MligTC455_53969

Region-enriched expression

Region	logFC	logCPM	Pvalue	FDR	Specificity
RegionR1	1.43	3.846	0.08836	0.64086
RegionR2	-0.011	3.846	0.97665	1.00000
RegionR3	-0.13	3.846	0.68741	1.00000
RegionR4	-0.025	3.846	0.95530	1.00000
RegionR5	-0.391	3.846	0.20016	0.49061
RegionR6	-0.249	3.846	0.46110	1.00000
RegionR7	-0.262	3.846	0.57024	1.00000
RegionR8	-0.361	3.846	0.52984	1.00000

Regeneration-enriched expression

Region	logFC	logCPM	PValue	FDR	Specificity
RegenerationR1	-2.268	3.846	0.11331	0.83828
RegenerationR2	-0.638	3.846	0.07947	0.45462
RegenerationR3	-0.923	3.846	0.02327	0.27483
RegenerationR4	-1.296	3.846	0.00218	0.05941
RegenerationR5	-0.863	3.846	0.02796	0.28250
RegenerationR6	-1.381	3.846	0.00240	0.05553
RegenerationBL	-0.977	3.846	0.11375	0.39841
RegenerationTP	-0.623	3.846	0.28170	0.72949

Genes with expression patterns similar to MligTC455_53969

Nr.	Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Σ Spearman correlations	Int1	Int2	Int3	Reg1	Reg2	Reg3	Annotation
1.	MligTC455_53969	547	11.39	Mlig455_000819	Neo: - Age: -	PTPN4	6	1.000	1.000	1.000	1.000	1.000	1.000	Mlig455_000819 {REF} {Length: 3852} {Pfam: Protein-tyrosine phosphatase [PF00102.29, score=225.9]; PDZ domain [PF00595.26, score=61.8]; Tyrosine phosphatase family [PF13350.8, score=21.0]} {Human: ENSG00000088179, PTPN4, protein tyrosine phosphatase, non-receptor type 4, [Score=453, Expect=1e-149]} {Mouse: ENSMUSG00000026384, Ptpn4, protein tyrosine phosphatase, non-receptor type 4, [Score=462, Expect=2e-153]} {Dmel: FBgn0261985, Ptpmeg, Protein tyrosine phosphatase Meg, [Score=196, Expect=5e-54]} {Celegans: WBGene00004213, ptp-1, Tyrosine-protein phosphatase 1, [Score=407, Expect=2e-136]} {Smed: dd_Smed_v6_9236_0_1, dd_Smed_v6_9236_0_1, [RH, Score=360, Expect=1e-113]} {RNA1509_39440} {RNA1310_4025} {RNA815_2821.1}
2.	MligTC455_42782	550	11.46	Mlig455_032867	Neo: - Age: -	ATF6B	2.659	-	-	0.831	0.961	-	0.867	Mlig455_032867 {REF} {Length: 3631} {TRANSSPLICED} {Pfam: bZIP transcription factor [PF00170.23, score=49.9]; Basic region leucine zipper [PF07716.17, score=35.7]; Cell division protein ZapB [PF06005.14, score=20.4]} {Human: ENSG00000213676, ATF6B, activating transcription factor 6 beta, [RH, Score=174, Expect=1e-45]; ENSG00000228628, ATF6B, activating transcription factor 6 beta, [RH, Score=174, Expect=1e-45]; ENSG00000168468, ATF6B, activating transcription factor 6 beta, [RH, Score=174, Expect=1e-45]; ENSG00000234539, ATF6B, activating transcription factor 6 beta, [RH, Score=174, Expect=1e-45]} {Mouse: ENSMUSG00000015461, Atf6b, activating transcription factor 6 beta, [RH, Score=179, Expect=2e-47]} {Dmel: FBgn0033010, Atf6, [RH, Score=57.8, Expect=2e-08]} {Celegans: WBGene00016162, crh-2, CREB Homolog, [Score=58.5, Expect=5e-09]} {Smed: dd_Smed_v6_3847_0_1, dd_Smed_v6_3847_0_1, [RH, Score=117, Expect=3e-27]} {RNA1509_33194, RNA1509_5804} {RNA1310_3250, RNA1509_33194, RNA1509_5804} {RNA1509_33194, RNA1509_5804, RNA815_2097}
3.	MligTC455_29572	245	5.1	Mlig455_050386	Neo: - Age: Down-Down-Up	TRAF3	0.966	-	-	-	-	-	0.966	Mlig455_050386 {REF} {Length: 3641} {TRANSSPLICED} {Pfam: TRAF-type zinc finger [PF02176.20, score=39.3]; zinc finger of C3HC4-type, RING [PF15227.8, score=21.9]; zf-RING of BARD1-type protein [PF14835.8, score=18.8]} {Human: ENSG00000131323, TRAF3, TNF receptor associated factor 3, [RH, Score=305, Expect=2e-96]} {Mouse: ENSMUSG00000021277, Traf3, TNF receptor-associated factor 3, [RH, Score=304, Expect=5e-96]; ENSMUSG00000111385, Traf5, TNF receptor-associated factor 5, [RH, Score=295, Expect=1e-92]; ENSMUSG00000026637, Traf5, TNF receptor-associated factor 5, [RH, Score=295, Expect=1e-92]} {Dmel: FBgn0026319, Traf4, TNF-receptor-associated factor 4, [Score=122, Expect=1e-29]} {Celegans: WBGene00006612, trf-1, TNF Receptor Associated Factor (TRAF) homolog; TRF-1, [Score=102, Expect=7e-23]} {Smed: dd_Smed_v6_4392_0_1, dd_Smed_v6_4392_0_1, [RH, Score=181, Expect=1e-50]} {RNA1509_2193, RNA1509_51178} {RNA1310_5587.1, RNA1509_2193, RNA1509_51178} {RNA1509_2193, RNA1509_51178, RNA815_4083.2}
4.	MligTC455_18769	90	1.88	Mlig455_046707	Neo: - Age: -		0.954	-	-	-	-	-	0.954	Mlig455_046707 {REF} {Length: 4376} {NoTransDecoderORF} {RNA1509_52129} {RNA1310_53532} {RNA815_18388.1}
5.	MligTC455_52149	336	7.01	Mlig455_012974	Neo: - Age: Down-Up-Down, logFC(26M/2M)=-0.317	TTLL6	0.952	-	-	-	0.952	-	-	Mlig455_012974 {REF} {Length: 3712} {TRANSSPLICED} {Pfam: Tubulin-tyrosine ligase family [PF03133.17, score=270.4]; YheC/D like ATP-grasp [PF14398.8, score=23.7]; Sugar-transfer associated ATP-grasp [PF14397.8, score=18.8]} {Human: ENSG00000170703, TTLL6, tubulin tyrosine ligase like 6, [RH, Score=532, Expect=4e-174]} {Mouse: ENSMUSG00000045467, Ttll13, tubulin tyrosine ligase-like family, member 13, [Score=561, Expect=0.0]} {Dmel: FBgn0039501, CG5987, [RH, Score=454, Expect=7e-147]} {Celegans: WBGene00019230, ttll-11, Tubulin Tyrosine Ligase Like, [Score=212, Expect=1e-57]} {Smed: dd_Smed_v6_8131_0_1, dd_Smed_v6_8131_0_1, [RH, Score=706, Expect=0.0]} {RNA1509_15498} {RNA1310_4663, RNA1509_15498} {RNA1509_15498, RNA815_9052}

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